Training

Friends Don't Let Friends Make Bad Graphs

Visualisations in Galaxy

Ploting a Microbial Genome with Circos

Visualisation with Circos

Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)

Mapping and molecular identification of phenotype-causing mutations

Somatic Variant Discovery from WES Data Using Control-FREEC

Calling variants in diploid systems

Exome sequencing data analysis for diagnosing a genetic disease

Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates

Identification of somatic and germline variants from tumor and normal sample pairs

Trio Analysis using Synthetic Datasets from RD-Connect GPAP

Calling variants in non-diploid systems

Calling very rare variants

Introduction to Variant analysis

De novo transcriptome reconstruction with RNA-Seq

Pathway analysis with the MINERVA Platform

Reference-based RNA-Seq data analysis

Reference-based RNAseq data analysis (long)

Visualization of RNA-Seq results with Volcano Plot in R

RNA-seq Alignment with STAR

RNA Seq Counts to Viz in R

Visualization of RNA-Seq results with CummeRbund

Introduction to Transcriptomics

RNA-Seq analysis with AskOmics Interactive Tool

Visualization of RNA-Seq results with heatmap2

Differential abundance testing of small RNAs

CLIP-Seq data analysis from pre-processing to motif detection

RNA-RNA interactome data analysis

2: RNA-seq counts to genes

Genome-wide alternative splicing analysis

GO Enrichment Analysis

Network analysis with Heinz

RNA-Seq data analysis, clustering and visualisation tutorial

3: RNA-seq genes to pathways

Visualization of RNA-Seq results with Volcano Plot

Small Non-coding RNA Clustering using BlockClust

De novo transcriptome assembly, annotation, and differential expression analysis

1: RNA-Seq reads to counts

Live Coding is a Skill

Set up a Galaxy for Training

Running a workshop as an instructor

Teaching online

Training Infrastructure as a Service

Asynchronous training

Teaching experiences

Course Builder

Organizing a workshop

Hybrid training

Galaxy Admin Training

Overview of the Galaxy Training Material for Instructors

Workshop Kickoff

Designing plasmids encoding predicted pathways by using the BASIC assembly method

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

Evaluating and ranking a set of pathways based on multiple metrics

Supervised Learning with Hyperdimensional Computing

Introduction to Machine Learning using R

Fine tune large protein model (ProtTrans) using HuggingFace

Interval-Wise Testing for omics data

Image classification in Galaxy with fruit 360 dataset

Galaxy Tabular Learner - Building a Model using Chowell clinical data

Introduction to deep learning

Deep Learning (Part 1) - Feedforward neural networks (FNN)

Train and Test a Deep learning image classifier with Galaxy-Ludwig

Modeling Breast Cancer Subtypes with Flexynesis

GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000

Text-mining with the SimText toolset

Age prediction using machine learning

Prepare Data from CbioPortal for Flexynesis Integration

Deep Learning (Part 3) - Convolutional neural networks (CNN)

Basics of machine learning

Classification in Machine Learning

Regression in Machine Learning

Unsupervised Analysis of Bone Marrow Cells with Flexynesis

Identifing Survival Markers of Brain tumor with Flexynesis

Deep Learning (Part 2) - Recurrent neural networks (RNN)

A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy

PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis

Clustering in Machine Learning

Machine learning: classification and regression

Automated Cell Annotation

Trajectory analysis

Inferring single cell trajectories with Monocle3

Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

Inferring single cell trajectories with Monocle3 (R)

Single-cell Formats and Resources

Inferring single cell trajectories with Scanpy

Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

Inferring single cell trajectories with Scanpy (Python)

Plates, Batches, and Barcodes

Converting NCBI Data to the AnnData Format

Multi-sample batch correction with Harmony and SnapATAC2

Filter, plot, and explore single cell RNA-seq data with Seurat

Scanpy Parameter Iterator

Clustering 3K PBMCs with Seurat

Filter, plot and explore single-cell RNA-seq data with Scanpy

Evaluating Reference Data for Bulk RNA Deconvolution

Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

Clustering 3K PBMCs with Scanpy

Comparing inferred cell compositions using MuSiC deconvolution

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

Combining single cell datasets after pre-processing

Removing the effects of the cell cycle

Downstream Single-cell RNA analysis with RaceID

Single-cell ATAC-seq standard processing with SnapATAC2

Importing files from public atlases

Understanding Barcodes

Generating a single cell matrix using Alevin and combining datasets (bash + R)

An introduction to scRNA-seq data analysis

Generating a single cell matrix using Alevin

Pre-processing of 10X Single-Cell RNA Datasets

GO Enrichment Analysis on Single-Cell RNA-Seq Data

Bulk RNA Deconvolution with MuSiC

Single-cell quality control with scater

Converting between common single cell data formats

Pseudobulk Analysis with Decoupler and EdgeR

Pre-processing of Single-Cell RNA Data

Pre-processing of 10X Single-Cell ATAC-seq Datasets

Quality and contamination control in bacterial isolate using Illumina MiSeq Data

Mapping

Clean and manage Sanger sequences from raw files to aligned consensus

Quality Control

Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes

Screening assembled genomes for contamination using NCBI FCS

Label-free versus Labelled - How to Choose Your Quantitation Method

Introduction to proteomics, protein identification, quantification and statistical modelling

Label-free data analysis using MaxQuant

Proteogenomics 3: Novel peptide analysis

Neoantigen 4: Variant Annotation

metaQuantome 3: Taxonomy

Single Cell Proteomics data analysis with bioconductor-scp

Multiomics data analysis using MultiGSEA

Neoantigen 1b: Non-Reference-Database-Generation

Neoantigen 3: PepQuery2 Verification

Proteogenomics 1: Database Creation

metaQuantome 1: Data creation

Peptide and Protein Quantification via Stable Isotope Labelling (SIL)

Clinical Metaproteomics 3: Verification

metaQuantome 2: Function

Proteogenomics 2: Database Search

Peptide and Protein ID using SearchGUI and PeptideShaker

Clinical Metaproteomics 1: Database-Generation

Clinical Metaproteomics 2: Discovery

DIA Analysis using OpenSwathWorkflow

Clinical Metaproteomics 5: Data Interpretation

Neoantigen 5b: IEDB binding Validated Neopeptides

Protein FASTA Database Handling

Clinical Metaproteomics 4: Quantitation

Peptide and Protein ID using OpenMS tools

Machine Learning Modeling of Anticancer Peptides

MaxQuant and MSstats for the analysis of TMT data

Metaproteomics tutorial

MaxQuant and MSstats for the analysis of label-free data

Biomarker candidate identification

EncyclopeDIA

Neoantigen 1a: Fusion-Database-Generation

Library Generation for DIA Analysis

Neoantigen 5a: Predicting HLA Binding

Peptide Library Data Analysis

Annotating a protein list identified by LC-MS/MS experiments

Secretome Prediction

Detection and quantitation of N-termini (degradomics) via N-TAILS

Mass spectrometry imaging: Loading and exploring MSI data

Neoantigen 2: Database merge and FragPipe discovery

Statistical analysis of DIA data

Analysis of plant scRNA-Seq Data with Scanpy

NCBI BLAST+ against the MAdLand

Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants

Whole transcriptome analysis of Arabidopsis thaliana

Avian influenza viral strain analysis from gene segment sequencing data

Pox virus genome analysis from tiled-amplicon sequencing data

M. tuberculosis Variant Analysis

16S Microbial Analysis with mothur (extended)

16S Microbial Analysis with mothur (short)

Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads

QIIME 2 Moving Pictures

Indexing and profiling microbes with MetaSBT

QIIME 2 Cancer Microbiome Intervention

16S Microbial analysis with Nanopore data

Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

MGnify v5.0 Amplicon Pipeline

Clinical Metaproteomics 3: Verification

Identification of the micro-organisms in a beer using Nanopore sequencing

Clinical Metaproteomics 1: Database-Generation

Clinical Metaproteomics 2: Discovery

Clinical Metaproteomics 5: Data Interpretation

Metatranscriptomics analysis using microbiome RNA-seq data

Remove contamination and host reads

Binning of metagenomic sequencing data

Clinical Metaproteomics 4: Quantitation

Taxonomic Profiling and Visualization of Metagenomic Data

Antibiotic resistance detection

Building an amplicon sequence variant (ASV) table from 16S data using DADA2

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Calculating α and β diversity from microbiome taxonomic data

Assembly of metagenomic sequencing data

Analyses of metagenomics data - The global picture

Introduction to Microbiome Analysis

Mass spectrometry: LC-MS data processing

Mass spectrometry: GC-MS analysis with the metaMS package

Mass spectrometry: LC-MS preprocessing with XCMS

Introduction to Metabolomics

Mass spectrometry: LC-MS analysis

Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)

Molecular formula assignment and mass recalibration with MFAssignR package

Predicting EI+ mass spectra with QCxMS

Mass spectrometry imaging: Finding differential analytes

Mass spectrometry imaging: Examining the spatial distribution of analytes

Finding the muon stopping site with pymuon-suite in Galaxy

Very Short Introductions: QC

Introduction to Galaxy as an RDM platform

Galaxy Basics for everyone

Galaxy Basics for genomics

A short introduction to Galaxy

IGV Introduction

Upload data to Galaxy

Best Practices for Citing Galaxy

Options for using Galaxy

Introduction to Galaxy

Data Manipulation Olympics

Introduction to Genomics and Galaxy

NGS data logistics

How to reproduce published Galaxy analyses

From peaks to genes

Using BioImage.IO models for image analysis in Galaxy

Voronoi segmentation

Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools

Training Custom YOLO Models for Segmentation of Bioimages

Nucleoli segmentation and feature extraction using CellProfiler

Object tracking using CellProfiler

Analyse HeLa fluorescence siRNA screen

End-to-End Tissue Microarray Image Analysis with Galaxy-ME

Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines

Segmentation of Anatomical Structures in Medical 3-D Images

Content Tracking and Verification in Galaxy Workflows with ISCC-SUM

Execute a BiaPy workflow in Galaxy

Tracking of mitochondria and capturing mitoflashes

Where to start with bioimage analysis in Galaxy

Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy

Introduction to Image Analysis using Galaxy

Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy

Genomic Data Visualisation with JBrowse

Microbial Variant Calling

CRISPR screen analysis

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Refining Genome Annotations with Apollo (eukaryotes)

Functional annotation of protein sequences

Genome annotation with Maker

Essential genes detection with Transposon insertion sequencing

Genome annotation with Maker (short)

Genome annotation with Funannotate

Comparative gene analysis in unannotated genomes

Dataset construction for bacterial comparative genomics

Creating an Official Gene Set

Bacterial genome quality control

Genome Annotation

Bacterial pangenomics

Introduction to Genome Annotation

Genome annotation with Helixer

Comparison of two annotation tools - Helixer and Braker3

Masking repeats with RepeatMasker

Bacterial Genome Annotation

Identification of AMR genes in an assembled bacterial genome

Genome annotation with Braker3

Secondary metabolite discovery

Refining Genome Annotations with Apollo (prokaryotes)

From small to large-scale genome comparison

Genome annotation with Prokka

Getting started with Onedata distributed storage

Understanding Galaxy history system

Importing (uploading) data from Onedata

Using dataset collections

RStudio in Galaxy

Searching Your History

Exporting to Onedata remote

Use Jupyter notebooks in Galaxy

JupyterLab in Galaxy

Downloading and Deleting Data in Galaxy

Rule Based Uploader: Advanced

Onedata user-owned storage

Extracting Workflows from Histories

Annotate, prepare tests and publish Galaxy workflows in workflow registries

Rule Based Uploader

Creating high resolution images of Galaxy Workflows

Group tags for complex experimental designs

Name tags for following complex histories

Getting data into Galaxy

Galaxy workflows in Dockstore

InterMine integration with Galaxy

Creating, Editing and Importing Galaxy Workflows

Workflow Reports

Using Workflow Parameters

FAIRification of an RNAseq dataset

REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data

Persistent Identifiers

FAIR Bioimage Metadata

Submitting workflows to LifeMonitor

Access

Data Registration

FAIR Galaxy Training Material

Best practices for workflows in GitHub repositories

RO-Crate in Python

Metadata

Exporting Workflow Run RO-Crates from Galaxy

FAIR data management solutions

DataPLANT ARCs

Integrating InvenioRDM-compatible Repositories with Galaxy

FAIR and its Origins

Sequence data submission to ENA

RO-Crate - Introduction

Uploading Data to Zenodo from Galaxy

FAIR in a nutshell

Workflow Run RO-Crate Introduction

Making clinical datasets FAIR

Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub

An earth-system RO-Crate

Data management in Medicinal Chemistry

Phylogenetics - Back to Basics - Phylogenetic Networks

Phylogenetics - Back to Basics - Estimating trees from alignments

Phylogenetics - Back to Basics - Building Trees

Phylogenetics - Back to Basics - Multiple Sequence Alignment

Phylogenetics - Back to Basics - Terminology

Phylogenetic analysis for bacterial comparative genomics

Phylogenetics - Back to Basics - Introduction

Tree thinking for tuberculosis evolution and epidemiology

Identifying tuberculosis transmission links: from SNPs to transmission clusters

Phylogenetics - Back to basics

Introduction to ChIP-Seq data analysis

Introduction to DNA Methylation data analysis

Infinium Human Methylation BeadChip

Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

CUT&RUN data analysis

Identification of the binding sites of the Estrogen receptor

DNA Methylation data analysis

ATAC-Seq data analysis

Hi-C analysis of Drosophila melanogaster cells using HiCExplorer

Formation of the Super-Structures on the Inactive X

Regulations/standards for AI using DOME

Optimizing DNA Sequences for Biological Functions using a DNA LLM

Generating Artificial Yeast DNA Sequences using a DNA LLM

Deep Learning (without Generative Artificial Intelligence) using Python

Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM

Neural networks using Python

Fine-tuning a LLM for DNA Sequence Classification

Train-the-Trainer: putting it all together

Assessment and feedback in training and teachings

Training techniques to enhance learner participation and engagement

Motivation and Demotivation

Foundational Aspects of Machine Learning using Python

Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences

Cleaning GBIF data using OpenRefine

Audio data annotation with NEAL (Nature + Energy Audio labeler)

QGIS Web Feature Services

Visualize EBV cube data with Panoply netCDF viewer

Regional GAM

Biodiversity data exploration

Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities

Preparing genomic data for phylogeny reconstruction

RAD-Seq de-novo data analysis

Obis marine indicators

Checking expected species and contamination in bacterial isolate

Species distribution modeling

RAD-Seq to construct genetic maps

Ecoregionalization workflow tutorial

Sentinel 2 biodiversity

Marine Omics identifying biosynthetic gene clusters

Champs blocs indicators

Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS

Visualization of Climate Data using NetCDF xarray Map Plotting

Data submission using ENA upload Tool

RAD-Seq Reference-based data analysis

Cleaning GBIF data for the use in Ecology

Compute and analyze biodiversity metrics with PAMPA toolsuite

Phylodiversity analysis quick tutorial

From NDVI data with OpenEO to time series visualisation with Holoviews

Life Traits Ecoregionalization workflow

Taxonomic Analysis of eDNA

Metabarcoding/eDNA through Obitools

Text-Mining Differences in Chinese Newspaper Articles

Introduction to Digital Humanities in Galaxy

OpenRefine Tutorial for researching cultural data

Galaxy Interactive Tools

Writing Automated Tests for Galaxy

nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Data source integration

ToolFactory: Generating Tools From More Complex Scripts

Debugging Galaxy

Creating Galaxy tools from Conda Through Deployment

Setting up a dev Onedata instance

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

Contributing a New Feature to Galaxy Core

Contributing to BioBlend as a developer

Architecture 03 - Galaxy Architecture Principles

Architecture 10 - Galaxy File Sources Architecture

Galaxy Webhooks

Architecture 07 - Galaxy Task Management with Celery

Architecture 02 - Galaxy Project Management and Contribution

Architecture 01 - Galaxy Ecosystem and Projects

Architecture 12 - Galaxy Client Architecture

Galaxy Interactive Tours

Architecture 11 - Galaxy Markdown Architecture

Architecture 15 - Galaxy Production Deployment

Architecture 06 - Dependency Injection in Galaxy

Galaxy Interactive Environments

Tool Dependencies and Conda

ToolFactory: Generating Tools From Simple Scripts

Tool Dependencies and Containers

Architecture 04 - Galaxy Files and Directory Structure

Architecture 13 - Galaxy Dependencies Management

JavaScript plugins

Tool development and integration into Galaxy

Architecture 16 - Galaxy Testing

Generic plugins

Architecture 14 - Galaxy Startup Process

Architecture 05 - Galaxy Web Frameworks

Prerequisites for building software/conda packages

Architecture 09 - Galaxy Plugin Architecture

Scripting Galaxy using the API and BioBlend

Tool Shed: sharing Galaxy tools

Architecture 08 - Galaxy Application Components: Models, Managers, and Services

Python - Multiprocessing

Python - Coding Style

Python - Subprocess

Python - Globbing

Conda Environments For Software Development

Virtual Environments For Software Development

Python - Argparse

Python - Type annotations

Python - Testing

Python - Introductory Graduation

Python - Try & Except

Python - Files & CSV

Versioning your code and data with git

Python - Loops

Data manipulation with Pandas

Introduction to sequencing with Python (part four)

Python - Flow Control

Introduction to sequencing with Python (part three)

Data Manipulation Olympics - JQ

Python - Lists & Strings & Dictionaries

Plotting in Python

dplyr & tidyverse for data processing

Introduction to sequencing with Python (part two)

Data Manipulation Olympics - SQL

Python - Basic Types & Type Conversion

Advanced Python

Introduction to sequencing with Python (part one)

Python - Functions

Advanced R in Galaxy

Data visualisation Olympics - Visualization in R

Advanced CLI in Galaxy

CLI basics

SQL Educational Game - Murder Mystery

Introduction to SQL

Python - Math

Make & Snakemake

Version Control with Git

Python - Warm-up for statistics and machine learning

CLI Educational Game - Bashcrawl

R basics in Galaxy

SQL with R

SQL with Python

Advanced SQL

Introduction to Python

Basics of using Git from the Command Line

Variant Calling Workflow

One protein along the UniProt page

A (very) brief history of genomics

Learning about one gene across biological resources and formats

Data Manipulation Olympics

SARS-CoV-2 Viral Sample Alignment and Variant Visualization

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

Removal of human reads from SARS-CoV-2 sequencing data

Automating Galaxy workflows using the command line

Submitting sequence data to ENA

From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

Updating tool versions in a tutorial

Creating Slides

Creating content in Markdown

Single Cell Publication - Data Analysis

Single Cell Publication - Data Plotting

FAIR Galaxy Training Material

Creating a new tutorial

Adding Quizzes to your Tutorial

Preview the GTN website as you edit your training material

Contributing with GitHub via its interface

Generating PDF artefacts of the website

Creating Interactive Galaxy Tours

Including a new topic

Updating diffs in admin training

Design and plan session, course, materials

Adding auto-generated video to your slides

GTN Metadata

Tools, Data, and Workflows for tutorials

FAIR-by-Design methodology

Principles of learning and how they apply to training and teaching

Teaching Python

Contributing to the Galaxy Training Network with GitHub

Overview of the Galaxy Training Material

Setting up molecular systems

Analysis of molecular dynamics simulations

Running molecular dynamics simulations using GROMACS

Running molecular dynamics simulations using NAMD

Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring

Protein-ligand docking

Data management in Medicinal Chemistry

Protein target prediction of a bioactive ligand with Align-it and ePharmaLib

High Throughput Molecular Dynamics and Analysis

Creating a Special Interest Group

Make your tools available on your subdomain

Creation of resources listing all the tools and their metadata relevant to your community

Creating community content

What's a Special Interest Group?

Creation of resources listing Galaxy workflow for your community

Creation of the labs in the different Galaxy instances for your community

Creation of a Galaxy tutorial table for your community

Visualize Climate data with Panoply netCDF viewer

Ocean Data View (ODV)

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab

Getting your hands-on earth data

Collaboration with JupyterGIS

Introduction to climate data

Getting your hands-on climate data

Sentinel 5P data visualisation

Pangeo Notebook in Galaxy - Introduction to Xarray

Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools

Analyse Argo data

Nitrate DMQC for autonomous platforms such as Argo floats

Ocean's variables study

Deeper look into Genome Assembly algorithms

Genome assembly and assembly QC - Introduction short version

An introduction to get started in genome assembly and annotation

Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

Hybrid genome assembly - Nanopore and Illumina

De Bruijn Graph Assembly

ERGA post-assembly QC

Decontamination of a genome assembly

Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Making sense of a newly assembled genome

Genome Assembly Quality Control

Genome assembly using PacBio data

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

Chloroplast genome assembly

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data

Unicycler Assembly

Large genome assembly and polishing

Assembly of the mitochondrial genome from PacBio HiFi reads

Assembly of metagenomic sequencing data

An Introduction to Genome Assembly

Welcome to the BioImage Model Zoo

Contribute to the BioImage.IO models

BioImage Model Zoo: Advanced models in one-click

Deploying a compute cluster in OpenStack via Terraform

Deploying Tailscale/Headscale for private mesh networking

Deploying Wireguard for private mesh networking

Pulsar usage on SURF Research Cloud

Galaxy usage on SURF Research Cloud

Managing Galaxy on Kubernetes

Galaxy Installation on Kubernetes

Training Infrastructure as a Service (TIaaS)

How I learned to stop worrying and love the systemd

Alternative Celery Deployment for Galaxy

Upgrading Galaxy

Enable upload via FTP

Galaxy Database schema

Customizing the look of Galaxy (Manual)

Mapping Jobs to Destinations using TPV

Galaxy Monitoring with Reports

Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)

Automation with Jenkins

Create a subdomain for your community on UseGalaxy.eu

Deploying a Beacon v1 in Galaxy

Adding file-sources to Galaxy

Customizing the look of Galaxy

Performant Uploads with TUS

Use Apptainer containers for running Galaxy jobs

Reference Data with CVMFS without Ansible

Monitoring Galaxy and Pulsar with Sentry

Galaxy Interactive Tools

Data Libraries

Server Maintenance: Cleanup, Backup, and Restoration

Controlling Galaxy with systemd or Supervisor

Docker and Galaxy

Galaxy Installation with Ansible

Galaxy Monitoring with Telegraf and Grafana

Galactic Database

Galaxy Tool Management with Ephemeris

User, Role, Group, Quota, and Authentication managment

uWSGI

Galaxy Monitoring with gxadmin

Connecting Galaxy to a compute cluster

Galaxy Troubleshooting

Ansible

Advanced customisation of a Galaxy instance

Gearing towards production

Galaxy Administrator Time Burden and Technology Usage

Setting up Celery Workers for Galaxy

Galaxy Monitoring

Distributed Object Storage

Galaxy from an administrator's point of view

Running Jobs on Remote Resources with Pulsar

External Authentication

Empathy

Server: Other

Reference Data with CVMFS

Reference Data with Data Managers

Galaxy on the Cloud