Training

Title (+link)	GTN topic name	Last updated	EDAM topic(s)	EDAM operation(s)	Resources available
Friends Don't Let Friends Make Bad Graphs	Visualisation	2023-11-20			Slides Video
Ploting a Microbial Genome with Circos	Visualisation	2026-09-23		Sequence visualisation	Hands-on
Visualisation with Circos	Visualisation	2026-09-23		Sequence visualisation	Slides Video Hands-on
Visualisations in Galaxy	Visualisation	2023-01-12			Slides
Calculating CHEK2 variant effect scores from MAVE data with CountESS	Variant Analysis	2026-09-23		Visualisation	Hands-on
Pangenome variant calling with DeepVariant	Variant Analysis	2026-09-30		Genome comparison Read mapping Visualisation Sequencing quality control	Hands-on
Trio Analysis using Synthetic Datasets from RD-Connect GPAP	Variant Analysis	2026-09-23		Genetic variation analysis Sequence analysis	Video Hands-on
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates	Variant Analysis	2025-02-24		Sequence trimming Read pre-processing Genome indexing Generation Sequence alignment Data handling Primer removal Visualisation Read mapping	Hands-on
Somatic Variant Discovery from WES Data Using Control-FREEC	Variant Analysis	2026-09-23		Validation Copy number estimation Genome indexing Sequence alignment Generation Sequence visualisation Sequencing quality control Variant calling Genome alignment Statistical calculation Visualisation Read mapping Sequence composition calculation	Hands-on
Mapping and molecular identification of phenotype-causing mutations	Variant Analysis	2026-09-23			Hands-on
Identification of somatic and germline variants from tumor and normal sample pairs	Variant Analysis	2026-09-23		Validation Sequence alignment analysis Genome indexing Sequence alignment Generation Sequencing quality control Variant calling Data handling Statistical calculation Visualisation Read mapping Sequence composition calculation	Hands-on
Calling variants in diploid systems	Variant Analysis	2026-09-23		Variant calling Statistical calculation Genetic variation analysis Sequence analysis	Hands-on
Exome sequencing data analysis for diagnosing a genetic disease	Variant Analysis	2026-09-23		Validation Genome indexing Sequence alignment Generation Sequencing quality control Variant calling Statistical calculation Genetic variation analysis Visualisation Read mapping Sequence composition calculation Sequence analysis	Video Hands-on
Calling variants in non-diploid systems	Variant Analysis	2026-09-23	Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Genetic variation	Formatting Sequence alignment analysis Genome indexing Sequence alignment Generation Sequencing quality control Variant calling Data handling Statistical calculation Read mapping Sequence composition calculation	Hands-on
Calling very rare variants	Variant Analysis	2026-09-23		Sequencing quality control Generation Statistical calculation Genome indexing Sequence alignment Read mapping Sequence composition calculation Variant calling	Hands-on
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons	Variant Analysis	2026-09-23		Service discovery Genetic variation analysis Database search	Hands-on
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)	Variant Analysis	2026-09-23		Service discovery Genetic variation analysis Database search	Hands-on
Introduction to Variant analysis	Variant Analysis	2023-03-05			Slides
Reference-based RNAseq data analysis (long)	Transcriptomics	2023-02-17			Hands-on
Visualization of RNA-Seq results with Volcano Plot in R	Transcriptomics	2026-09-23			Video Hands-on
RNA Seq Counts to Viz in R	Transcriptomics	2026-09-23			Video Hands-on
RNA-seq Alignment with STAR	Transcriptomics	2026-09-23			Hands-on
RNA-Seq analysis with AskOmics Interactive Tool	Transcriptomics	2023-11-09			Slides Hands-on
Visualization of RNA-Seq results with CummeRbund	Transcriptomics	2026-09-23			Slides Hands-on
3: RNA-seq genes to pathways	Transcriptomics	2026-09-23		Gene set testing Gene functional annotation Gene-set enrichment analysis	Hands-on
1: RNA-Seq reads to counts	Transcriptomics	2026-09-23		Sequence trimming Validation Formatting Read pre-processing Read summarisation Sequence alignment Sequencing quality control Data handling Statistical calculation RNA-Seq quantification Primer removal Sequence composition calculation	Hands-on
2: RNA-seq counts to genes	Transcriptomics	2026-09-23		Annotation RNA-Seq analysis	Hands-on
Network analysis with Heinz	Transcriptomics	2026-09-23		Pathway or network analysis RNA-Seq analysis Differential gene expression analysis	Slides Hands-on
Genome-wide alternative splicing analysis	Transcriptomics	2026-09-23		Validation Formatting Sequence contamination filtering Sequence alignment Protein sequence analysis Sequence annotation Sequencing quality control De-novo assembly Sequence comparison Data handling Transcriptome assembly Statistical calculation Visualisation Sequence assembly validation Sequence composition calculation RNA-Seq analysis Sequence analysis	Slides Hands-on
RNA-Seq data analysis, clustering and visualisation tutorial	Transcriptomics	2026-06-08		Gene functional annotation RNA-Seq analysis Differential gene expression analysis	Hands-on
GO Enrichment Analysis	Transcriptomics	2026-09-23		Gene-set enrichment analysis	Hands-on
RNA-RNA interactome data analysis	Transcriptomics	2026-09-23		Sequence trimming Read pre-processing Statistical calculation Primer removal Sequence composition calculation Sequencing quality control	Hands-on
CLIP-Seq data analysis from pre-processing to motif detection	Transcriptomics	2026-09-23		Sequence trimming Read pre-processing Sequence alignment Sequencing quality control Mapping Statistical calculation Primer removal Sequence composition calculation	Hands-on
Visualization of RNA-Seq results with heatmap2	Transcriptomics	2026-09-23			Hands-on
Visualization of RNA-Seq results with Volcano Plot	Transcriptomics	2026-09-23			Video Hands-on
De novo transcriptome assembly, annotation, and differential expression analysis	Transcriptomics	2023-11-09		Validation Coding region prediction De-novo assembly Sequencing quality control Transcriptome assembly Gene functional annotation Statistical calculation Sequence composition calculation de Novo sequencing	Hands-on
Differential abundance testing of small RNAs	Transcriptomics	2026-09-23		Sequence trimming Read pre-processing Sequence alignment Sequencing quality control Gene expression analysis Differential gene expression analysis RNA-Seq quantification Statistical calculation Primer removal Sequence composition calculation RNA-Seq analysis	Hands-on
Small Non-coding RNA Clustering using BlockClust	Transcriptomics	2026-09-23			Hands-on
De novo transcriptome reconstruction with RNA-Seq	Transcriptomics	2026-09-23		Read summarisation Sequence alignment Sequence annotation Sequencing quality control Differential gene expression analysis Transcriptome assembly Statistical calculation RNA-Seq quantification Sequence composition calculation RNA-Seq analysis	Video Hands-on
Pathway analysis with the MINERVA Platform	Transcriptomics	2026-09-23		Validation Sequence trimming Read pre-processing Read summarisation Sequence alignment Sequencing quality control Data handling Gene functional annotation RNA-Seq quantification Statistical calculation Primer removal Annotation Sequence composition calculation RNA-Seq analysis	Hands-on
Reference-based RNA-Seq data analysis	Transcriptomics	2026-09-23		Sequence trimming RNA-Seq analysis Read pre-processing Read summarisation Sequence alignment Sequencing quality control Data handling Exonic splicing enhancer prediction Pathway or network analysis Primer removal Read mapping Structure visualisation Validation Enrichment analysis Formatting Differential gene expression analysis Pathway visualisation Genome visualisation Gene functional annotation RNA-Seq quantification Visualisation Pathway or network visualisation	Video Hands-on
Introduction to Transcriptomics	Transcriptomics	2025-04-08			Slides Video
Galaxy Admin Training	Teaching and Hosting Galaxy Training	2024-09-17			Hands-on
Set up a Galaxy for Training	Teaching and Hosting Galaxy Training	2023-11-09			Hands-on
Organizing a workshop	Teaching and Hosting Galaxy Training	2023-11-09			Hands-on
Training Infrastructure as a Service	Teaching and Hosting Galaxy Training	2023-12-20			Hands-on
Running a workshop as an instructor	Teaching and Hosting Galaxy Training	2025-12-18			Hands-on
Teaching experiences	Teaching and Hosting Galaxy Training	2022-09-23			Hands-on
Hybrid training	Teaching and Hosting Galaxy Training	2024-06-25			Hands-on
Course Builder	Teaching and Hosting Galaxy Training	2023-11-02			Hands-on
Teaching online	Teaching and Hosting Galaxy Training	2023-10-23			Hands-on
Live Coding is a Skill	Teaching and Hosting Galaxy Training	2023-11-09			Hands-on
Asynchronous training	Teaching and Hosting Galaxy Training	2023-11-02			Hands-on
Overview of the Galaxy Training Material for Instructors	Teaching and Hosting Galaxy Training	2024-08-08			Slides Video
Workshop Kickoff	Teaching and Hosting Galaxy Training	2024-02-20			Slides
Evaluating and ranking a set of pathways based on multiple metrics	Synthetic Biology	2026-09-23			Video Hands-on
Designing plasmids encoding predicted pathways by using the BASIC assembly method	Synthetic Biology	2026-09-23			Video Hands-on
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools	Synthetic Biology	2024-06-14			Video Hands-on
Supervised Learning with Hyperdimensional Computing	Statistics and Machine Learning	2026-09-23			Hands-on
Introduction to Machine Learning using R	Statistics and Machine Learning	2024-10-15			Video Hands-on
Fine tune large protein model (ProtTrans) using HuggingFace	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Age prediction using machine learning	Statistics and Machine Learning	2026-09-23			Hands-on
Text-mining with the SimText toolset	Statistics and Machine Learning	2026-09-23			Hands-on
Identifing Survival Markers of Brain tumor with Flexynesis	Statistics and Machine Learning	2026-09-23			Hands-on
Train and Test a Deep learning image classifier with Galaxy-Ludwig	Statistics and Machine Learning	2024-12-11			Hands-on
Basics of machine learning	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Interval-Wise Testing for omics data	Statistics and Machine Learning	2026-09-23		Differentially-methylated region identification Differential gene expression analysis Peak calling Comparison Genome annotation	Hands-on
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy	Statistics and Machine Learning	2026-09-23			Hands-on
Galaxy Tabular Learner - Building a Model using Chowell clinical data	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Comparing ligand-binding site predictions across different protein structure modalities using SIMORGH	Statistics and Machine Learning	2026-09-24		Protein structure analysis Protein structure prediction Fold recognition Protein property calculation Database search	Hands-on
Deep Learning (Part 3) - Convolutional neural networks (CNN)	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Introduction to deep learning	Statistics and Machine Learning	2026-09-23			Hands-on
Regression in Machine Learning	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Unsupervised Analysis of Bone Marrow Cells with Flexynesis	Statistics and Machine Learning	2026-09-23			Hands-on
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis	Statistics and Machine Learning	2026-09-23			Hands-on
Image classification in Galaxy with fruit 360 dataset	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Classification in Machine Learning	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
GTEx Tissue Modeling with Galaxy Image Learner	Statistics and Machine Learning	2026-07-24			Slides Hands-on
Prepare Data from CbioPortal for Flexynesis Integration	Statistics and Machine Learning	2026-09-23			Hands-on
Modeling Breast Cancer Subtypes with Flexynesis	Statistics and Machine Learning	2026-09-23			Video Hands-on
Deep Learning (Part 1) - Feedforward neural networks (FNN)	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Deep Learning (Part 2) - Recurrent neural networks (RNN)	Statistics and Machine Learning	2026-09-23			Slides Video Hands-on
Clustering in Machine Learning	Statistics and Machine Learning	2026-09-23		Visualisation	Hands-on
Machine learning: classification and regression	Statistics and Machine Learning	2026-09-23			Hands-on
GO Enrichment Analysis on Single-Cell RNA-Seq Data	Single Cell	2026-09-23		Gene-set enrichment analysis	Slides Hands-on
Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium	Single Cell	2026-09-23		Differential gene expression profiling Expression profile clustering Differential gene expression analysis Principal component visualisation	Hands-on
Pseudobulk Analysis with Decoupler and EdgeR	Single Cell	2026-09-28		Principal component visualisation Expression profile clustering Differential gene expression analysis	Video Hands-on
Automated Cell Annotation	Single Cell	2025-02-27			Slides
Trajectory analysis	Single Cell	2025-02-13			Slides
Bulk matrix to ESet \| Creating the bulk RNA-seq dataset for deconvolution	Single Cell	2026-06-25		Annotation	Hands-on
Inferring single cell trajectories with Monocle3	Single Cell	2026-09-23			Video Hands-on
Inferring single cell trajectories with Monocle3 (R)	Single Cell	2025-03-11			Hands-on
Single-cell Formats and Resources	Single Cell	2025-02-13			Slides Video
Matrix Exchange Format to ESet \| Creating a single-cell RNA-seq reference dataset for deconvolution	Single Cell	2026-06-25		Annotation	Hands-on
Inferring single cell trajectories with Scanpy	Single Cell	2026-09-23			Hands-on
Batch Correction and Integration with Seurat or Scanpy	Single Cell	2026-09-23		Expression profile clustering Differential gene expression analysis Principal component visualisation	Hands-on
Inferring single cell trajectories with Scanpy (Python)	Single Cell	2025-03-11			Video Hands-on
Plates, Batches, and Barcodes	Single Cell	2025-02-13			Slides Video
Evaluating Reference Data for Bulk RNA Deconvolution	Single Cell	2026-09-23		Visualisation Annotation	Hands-on
Filter, plot and explore single-cell RNA-seq data with Scanpy	Single Cell	2025-04-23		Expression profile clustering Differential gene expression analysis Principal component visualisation	Video Hands-on
Converting NCBI Data to the AnnData Format	Single Cell	2026-06-25			Video Hands-on
Clustering 3K PBMCs with Seurat	Single Cell	2026-09-23			Video Hands-on
Multi-sample batch correction with Harmony and SnapATAC2	Single Cell	2026-09-23		Dimensionality reduction Gene expression profiling Essential dynamics	Hands-on
Scanpy Parameter Iterator	Single Cell	2026-06-25			Hands-on
Filter, plot, and explore single cell RNA-seq data with Seurat	Single Cell	2025-03-11			Hands-on
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)	Single Cell	2026-09-23			Video Hands-on
Single-cell ATAC-seq standard processing with SnapATAC2	Single Cell	2026-09-28		Genome indexing Essential dynamics Sequence alignment Generation Differential gene expression analysis Dimensionality reduction Gene expression profiling Expression profile clustering Read mapping Principal component visualisation	Hands-on
Filter, plot, and explore single cell RNA-seq data with Seurat (R)	Single Cell	2025-03-11			Hands-on
Downstream Single-cell RNA analysis with RaceID	Single Cell	2025-02-14		Molecular dynamics Expression profile clustering Expression analysis	Hands-on
Clustering 3K PBMCs with Scanpy	Single Cell	2026-09-23		Expression profile clustering Differential gene expression analysis Principal component visualisation	Slides Video Hands-on
Understanding Barcodes	Single Cell	2026-09-23		Sequence composition calculation Sequencing quality control Statistical calculation	Video Hands-on
Combining single cell datasets after pre-processing	Single Cell	2026-09-23			Video Hands-on
Removing the effects of the cell cycle	Single Cell	2026-09-23		Expression profile clustering Differential gene expression analysis Principal component visualisation	Hands-on
Importing files from public atlases	Single Cell	2026-06-25			Video Hands-on
Comparing inferred cell compositions using MuSiC deconvolution	Single Cell	2026-09-23			Hands-on
Generating a single cell matrix using Alevin and combining datasets (bash + R)	Single Cell	2025-04-22			Hands-on
An introduction to scRNA-seq data analysis	Single Cell	2025-02-13			Slides Video
Generating a single cell matrix using Alevin	Single Cell	2026-09-23		Sequence composition calculation Gene expression analysis RNA-Seq quantification	Video Hands-on
Pre-processing of Single-Cell RNA Data	Single Cell	2026-09-23		Validation Data handling Sequence alignment analysis RNA-Seq quantification Read summarisation Sequence alignment Sequencing quality control	Slides Hands-on
Converting between common single cell data formats	Single Cell	2026-06-25		Loading Community profiling	Hands-on
Pre-processing of 10X Single-Cell ATAC-seq Datasets	Single Cell	2026-09-23		Enrichment analysis Gene regulatory network analysis Genome indexing Sequence alignment Generation Imputation Sequencing quality control Expression profile clustering Differential gene expression analysis Peak calling Mapping Statistical calculation Visualisation Read mapping Sequence composition calculation Principal component visualisation	Hands-on
Bulk RNA Deconvolution with MuSiC	Single Cell	2026-09-23			Video Hands-on
Pre-processing of 10X Single-Cell RNA Datasets	Single Cell	2026-09-23		Validation Loading Community profiling Sequence alignment Sequencing quality control	Video Hands-on
Single-cell quality control with scater	Single Cell	2025-02-14		Read pre-processing Sequence visualisation Sequencing quality control	Hands-on
Clean and manage Sanger sequences from raw files to aligned consensus	Sequence Analysis	2026-09-23		Sequence clustering Taxonomic classification Phylogenetic analysis DNA barcoding Demultiplexing Sequence file editing Sequencing quality control Data handling Visualisation Sequence read processing	Hands-on
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes	Sequence Analysis	2026-09-23		Global alignment Sequence alignment analysis Multiple sequence alignment Sequence alignment PCR primer design Sequence analysis Local alignment	Hands-on
Quality and contamination control in bacterial isolate using Illumina MiSeq Data	Sequence Analysis	2026-09-23	Whole genome sequencing Genomics Microbiology Microbial ecology	Taxonomic classification Sequence contamination filtering Sequencing quality control Statistical calculation Visualisation Read mapping Expression analysis Cross-assembly	Video Hands-on
Quality Control	Sequence Analysis	2026-09-23		Sequence trimming Validation Read pre-processing Sequencing quality control Statistical calculation Box-Whisker plot plotting Primer removal Sequence composition calculation Scatter plot plotting	Slides Video Hands-on
Screening assembled genomes for contamination using NCBI FCS	Sequence Analysis	2026-09-23		Sequence trimming Sequence assembly validation Sequence contamination filtering	Hands-on
Mapping	Sequence Analysis	2026-09-23	Mapping	Genome visualisation Data handling Read mapping Sequence alignment analysis	Slides Video Hands-on
Label-free versus Labelled - How to Choose Your Quantitation Method	Proteomics	2025-05-27			Hands-on
Neoantigen 5b: IEDB binding Validated Neopeptides	Proteomics	2026-09-23			Hands-on
Label-free data analysis using MaxQuant	Proteomics	2025-05-21		Differential protein expression profiling Heat map generation Protein quantification Clustering Tag-based peptide identification Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation Spectrum calculation	Hands-on
MaxQuant and MSstats for the analysis of TMT data	Proteomics	2025-01-08		Heat map generation Protein quantification Clustering Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation	Hands-on
Proteogenomics 1: Database Creation	Proteomics	2026-09-23		Transcriptome assembly Statistical calculation Variant calling Sequence alignment Sequence annotation RNA-Seq analysis	Video Hands-on
Clinical Metaproteomics 3: Verification	Proteomics	2026-09-23			Video Hands-on
metaQuantome 3: Taxonomy	Proteomics	2026-09-23	Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics Taxonomy	Differential protein expression analysis Query and retrieval Statistical inference Indexing Filtering Heat map generation Quantification Functional clustering Visualisation Principal component visualisation	Hands-on
Mass spectrometry imaging: Loading and exploring MSI data	Proteomics	2026-09-23	Proteomics		Hands-on
Multiomics data analysis using MultiGSEA	Proteomics	2026-09-23		Pathway analysis Aggregation Gene-set enrichment analysis	Hands-on
Clinical Metaproteomics 4: Quantitation	Proteomics	2026-09-23		Heat map generation Protein quantification Clustering Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation	Video Hands-on
Proteogenomics 3: Novel peptide analysis	Proteomics	2026-09-23			Video Hands-on
Secretome Prediction	Proteomics	2026-09-23			Hands-on
Clinical Metaproteomics 1: Database-Generation	Proteomics	2026-09-23		Protein identification de Novo sequencing Target-Decoy Expression analysis Tag-based peptide identification	Video Hands-on
Metaproteomics tutorial	Proteomics	2026-09-23	Proteomics Proteogenomics Biodiversity Taxonomy	Prediction and recognition Visualisation	Video Hands-on
metaQuantome 1: Data creation	Proteomics	2026-09-23	Proteomics Proteogenomics Biodiversity Taxonomy	Prediction and recognition Formatting Visualisation Label-free quantification Filtering	Hands-on
Neoantigen 4: Variant Annotation	Proteomics	2026-09-23			Hands-on
Neoantigen 3: PepQuery2 Verification	Proteomics	2026-09-23		Formatting Filtering	Hands-on
Proteogenomics 2: Database Search	Proteomics	2026-09-23		Peptide database search Conversion	Video Hands-on
Neoantigen 5a: Predicting HLA Binding	Proteomics	2026-09-23		Read mapping Genetic variation analysis	Hands-on
Detection and quantitation of N-termini (degradomics) via N-TAILS	Proteomics	2025-04-08	Proteomics		Hands-on
Peptide and Protein Quantification via Stable Isotope Labelling (SIL)	Proteomics	2026-09-23			Hands-on
Clinical Metaproteomics 2: Discovery	Proteomics	2026-09-23		Formatting Heat map generation Protein quantification Clustering Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation Filtering	Video Hands-on
Neoantigen 2: Database merge and FragPipe discovery	Proteomics	2026-09-23			Hands-on
metaQuantome 2: Function	Proteomics	2026-09-23	Proteomics Proteogenomics Metatranscriptomics Microbial ecology Metagenomics	Differential protein expression analysis Query and retrieval Statistical inference Indexing Filtering Heat map generation Quantification Functional clustering Visualisation Principal component visualisation	Hands-on
Peptide and Protein ID using SearchGUI and PeptideShaker	Proteomics	2026-09-23			Hands-on
Protein FASTA Database Handling	Proteomics	2025-04-08	Proteomics		Hands-on
Machine Learning Modeling of Anticancer Peptides	Proteomics	2026-09-23			Hands-on
Annotating a protein list identified by LC-MS/MS experiments	Proteomics	2026-09-23			Video Hands-on
MaxQuant and MSstats for the analysis of label-free data	Proteomics	2025-09-22		Differential protein expression profiling Heat map generation Protein quantification Clustering Tag-based peptide identification Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation Spectrum calculation	Video Hands-on
EncyclopeDIA	Proteomics	2026-09-23		Formatting Filtering	Video Hands-on
DIA Analysis using OpenSwathWorkflow	Proteomics	2025-05-20		Formatting Filtering	Hands-on
Biomarker candidate identification	Proteomics	2023-11-09			Hands-on
Single Cell Proteomics data analysis with bioconductor-scp	Proteomics	2026-09-23		Visualisation Expression analysis	Hands-on
Neoantigen 1a: Fusion-Database-Generation	Proteomics	2026-09-23		Sequence alignment	Hands-on
Clinical Metaproteomics 5: Data Interpretation	Proteomics	2026-09-23		Prediction and recognition Visualisation	Video Hands-on
Neoantigen 1b: Non-Reference-Database-Generation	Proteomics	2026-09-23		Transcriptome assembly Statistical calculation Variant calling Sequence alignment Sequence annotation RNA-Seq analysis	Hands-on
Library Generation for DIA Analysis	Proteomics	2025-06-02		Heat map generation Protein quantification Clustering Principal component plotting Statistical calculation Standardisation and normalisation Visualisation Imputation	Hands-on
Peptide and Protein ID using OpenMS tools	Proteomics	2026-09-23		Formatting Filtering	Hands-on
Peptide Library Data Analysis	Proteomics	2023-11-09			Hands-on
Statistical analysis of DIA data	Proteomics	2023-11-09		Differential protein expression profiling Spectrum calculation Tag-based peptide identification	Hands-on
Introduction to proteomics, protein identification, quantification and statistical modelling	Proteomics	2026-10-08			Slides Video
NCBI BLAST+ against the MAdLand	Sequence Analysis	2026-09-23		Sequence alignment analysis	Hands-on
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants	Sequence Analysis	2026-09-23		Phylogenetic analysis Phylogenetic tree editing Phylogenetic inference (from molecular sequences) Multiple sequence alignment Sequence analysis	Video Hands-on
Whole transcriptome analysis of Arabidopsis thaliana	Transcriptomics	2026-07-07		Validation Sequence trimming Read pre-processing Sequencing quality control Gene expression analysis Differential gene expression analysis RNA-Seq quantification Primer removal Visualisation Read mapping Sequence composition calculation RNA-Seq analysis	Slides Video Hands-on
Analysis of plant scRNA-Seq Data with Scanpy	Single Cell	2026-06-25		Expression profile clustering Differential gene expression analysis Principal component visualisation	Video Hands-on
Avian influenza viral strain analysis from gene segment sequencing data	Variant Analysis	2024-10-04		Phylogenetic analysis Sequence alignment analysis Sequence contamination filtering Genome indexing Sequence alignment Generation Sequencing quality control Sequence file editing De-novo assembly Data retrieval Data handling Primer removal Read mapping Multiple sequence alignment Sequence analysis	Hands-on
Pox virus genome analysis from tiled-amplicon sequencing data	Variant Analysis	2024-03-20		Global alignment Sequence alignment analysis Sequence contamination filtering Generation Sequence alignment Genome indexing Sequencing quality control Local alignment Primer removal Read mapping Multiple sequence alignment Sequence analysis	Hands-on
M. tuberculosis Variant Analysis	Variant Analysis	2026-09-23	Genomics Microbiology Sequence assembly Genetic variation Public health and epidemiology Infectious disease	Validation Taxonomic classification Global alignment Sequence alignment analysis Phylogenetic tree visualisation Sequence contamination filtering Sequence alignment Sequencing quality control Variant calling Phylogenetic tree generation Local alignment Antimicrobial resistance prediction Genome visualisation Statistical calculation Sequence composition calculation Sequence analysis	Video Hands-on
16S Microbial Analysis with mothur (extended)	Microbiome	2026-09-23	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Sequence clustering Taxonomic classification Phylogenetic analysis DNA barcoding Phylogenetic tree generation Sequencing quality control Visualisation Phylogenetic tree reconstruction Phylogenetic tree analysis Sequence read processing	Hands-on
16S Microbial Analysis with mothur (short)	Microbiome	2026-09-23	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Sequence clustering Taxonomic classification Phylogenetic analysis DNA barcoding Phylogenetic tree generation Sequencing quality control Visualisation Phylogenetic tree reconstruction Phylogenetic tree analysis Sequence read processing	Video Hands-on
QIIME 2 Cancer Microbiome Intervention	Microbiome	2024-03-14	Microbial ecology Taxonomy Sequence analysis Metabarcoding		Hands-on
QIIME 2 Moving Pictures	Microbiome	2026-02-18	Microbial ecology Taxonomy Sequence analysis Metabarcoding		Hands-on
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads	Microbiome	2026-05-18	Metagenomics Sequence assembly	Validation Genome comparison Genome annotation Sequencing quality control Data handling Statistical calculation Sequence assembly validation Sequence composition calculation	Video Hands-on
Indexing and profiling microbes with MetaSBT	Microbiome	2026-09-23	Microbial ecology Taxonomy		Hands-on
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2	Microbiome	2026-09-23		Sequence feature detection DNA barcoding	Hands-on
Taxonomic Profiling and Visualization of Metagenomic Data	Microbiome	2026-09-23	Metagenomics Microbial ecology Taxonomy Sequence analysis	Taxonomic classification Statistical calculation Aggregation Visualisation Genome annotation	Video Hands-on
Calculating α and β diversity from microbiome taxonomic data	Microbiome	2026-09-23		Visualisation Aggregation	Video Hands-on
Binning of metagenomic sequencing data	Microbiome	2026-09-23	Metagenomics Sequence assembly	Sequence clustering Validation Sequence composition calculation Genome comparison Sequencing quality control Sequence assembly Statistical calculation Read binning Sequence assembly validation Genome annotation Read mapping	Video Hands-on
Metabarcoding of bacteria in dunnart faecal samples across Australia (wild + captive) using QIIME 2	Microbiome	2026-10-07		Sequence trimming Taxonomic classification Read pre-processing Demultiplexing Data formatting Primer removal Visualisation	Hands-on
Metatranscriptomics analysis using microbiome RNA-seq data	Microbiome	2026-09-23	Metatranscriptomics Microbial ecology Taxonomy Function analysis Sequence analysis	Sequence trimming Sequence similarity search Phylogenetic tree visualisation Read pre-processing Sequencing quality control Primer removal Validation Taxonomic classification Phylogenetic analysis Sequence alignment analysis Species frequency estimation Sequence comparison Phylogenetic inference Phylogenetic tree editing Aggregation Statistical calculation Visualisation Sequence composition calculation Conversion	Slides Video Hands-on
Building an amplicon sequence variant (ASV) table from 16S data using DADA2	Microbiome	2026-09-23	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Visualisation DNA barcoding Data analysis Data deposition Variant calling	Video Hands-on
16S Microbial analysis with Nanopore data	Microbiome	2026-09-23	Microbial ecology Taxonomy Sequence analysis Metabarcoding	Validation Taxonomic classification Statistical calculation Sequence contamination filtering Visualisation Sequence composition calculation Sequencing quality control	Hands-on
Metatranscriptomics analysis using microbiome RNA-seq data (short)	Microbiome	2026-09-23	Metatranscriptomics Microbial ecology Taxonomy Function analysis Sequence analysis	Sequence trimming Sequence similarity search Phylogenetic tree visualisation Read pre-processing Sequencing quality control Primer removal Validation Taxonomic classification Phylogenetic analysis Sequence alignment analysis Species frequency estimation Sequence comparison Phylogenetic inference Phylogenetic tree editing Statistical calculation Visualisation Sequence composition calculation Conversion	Video Hands-on
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data	Microbiome	2026-09-23	Genomics Microbiology Sequence analysis Mobile genetic elements	Visualisation Pairwise sequence alignment	Hands-on
MGnify v5.0 Amplicon Pipeline	Microbiome	2026-09-23	Metagenomics Taxonomy Sequence analysis	Sequence trimming Analysis Read pre-processing DNA barcoding Sequencing quality control Alignment Nucleic acid design Nucleic acid feature detection Comparison k-mer counting Validation Sequence feature detection Sequence contamination filtering Data formatting Mapping Statistical calculation Visualisation Sequence composition calculation	Hands-on
Antibiotic resistance detection	Microbiome	2026-09-23	Metagenomic sequencing Public health and epidemiology Metagenomics Microbiology Infectious disease Sequence analysis Antimicrobial resistance	De-novo assembly Sequence assembly visualisation Antimicrobial resistance prediction Pairwise sequence alignment Aggregation Box-Whisker plot plotting Scatter plot plotting Mapping assembly Genome assembly Sequence analysis	Video Hands-on
Identification of the micro-organisms in a beer using Nanopore sequencing	Microbiome	2026-09-23	Metagenomics Microbial ecology Taxonomy Sequence analysis	Taxonomic classification Statistical calculation Aggregation Sequence contamination filtering Visualisation Sequence composition calculation Sequencing quality control	Video Hands-on
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition	Microbiome	2026-09-23	Metagenomics Public health and epidemiology Taxonomy Sequence assembly Pathology Sequence analysis	Multiple sequence alignment Sequence assembly visualisation Sequencing quality control Phylogenetic tree generation Variant calling Antimicrobial resistance prediction Data handling Pairwise sequence alignment Visualisation Phylogenetic tree reconstruction Base-calling Scatter plot plotting Validation Taxonomic classification Multilocus sequence typing Sequence alignment analysis Sequence contamination filtering De-novo assembly Sequence assembly Mapping Aggregation Statistical calculation Box-Whisker plot plotting Phylogenetic tree analysis Mapping assembly Sequence composition calculation Genome assembly Cross-assembly	Video Hands-on
Detection of shared microbial strains with SameStr	Microbiome	2026-09-23	Metagenomics Microbial ecology Taxonomy	Taxonomic classification	Hands-on
Assembly of metagenomic sequencing data	Microbiome	2026-09-23	Metagenomics Sequence assembly	Sequence trimming Formatting Sequence alignment analysis Read pre-processing Sequence contamination filtering Sequence assembly visualisation Sequence file editing Sequencing quality control Variant calling Local alignment Data handling Visualisation Statistical calculation Primer removal Sequence assembly validation Sequence composition calculation Genome assembly Read mapping	Video Hands-on
Remove contamination and host reads	Microbiome	2026-09-23		Validation Read mapping Sequencing quality control	Video Hands-on
Analyses of metagenomics data - The global picture	Microbiome	2026-09-23	Metagenomics Microbial ecology Taxonomy Sequence analysis Metabarcoding	Sequence clustering Taxonomic classification Phylogenetic analysis DNA barcoding Sequencing quality control Visualisation Sequence read processing	Hands-on
Introduction to Microbiome Analysis	Microbiome	2024-08-08			Slides Video
Mass spectrometry: GC-MS analysis with the metaMS package	Metabolomics	2026-09-23	Metabolomics	Data handling Visualisation	Hands-on
Mass spectrometry: LC-MS data processing	Metabolomics	2026-07-23	Metabolomics		Hands-on
Mass spectrometry: LC-MS preprocessing with XCMS	Metabolomics	2026-07-23	Metabolomics	Data handling Annotation Spectral analysis Visualisation	Slides Hands-on
Mass spectrometry imaging: Finding differential analytes	Metabolomics	2026-07-23	Metabolomics		Hands-on
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)	Metabolomics	2026-07-23	Metabolomics	Format validation Spectral library search Formatting Clustering Data handling Correlation Standardisation and normalisation Visualisation Imputation Filtering	Hands-on
Molecular formula assignment and mass recalibration with MFAssignR package	Metabolomics	2026-09-23	Metabolomics	Annotation Mass spectra calibration Deisotoping Visualisation	Hands-on
Predicting EI+ mass spectra with QCxMS	Metabolomics	2026-07-23	Metabolomics		Slides Hands-on
Mass spectrometry imaging: Examining the spatial distribution of analytes	Metabolomics	2026-09-23	Metabolomics		Hands-on
Mass spectrometry: LC-MS analysis	Metabolomics	2026-07-23	Metabolomics	Data handling Annotation Spectral analysis Visualisation	Hands-on
Introduction to Metabolomics	Metabolomics	2023-01-12			Slides
Finding the muon stopping site with pymuon-suite in Galaxy	Materials Science	2026-09-23			Video Hands-on
Upload data to Galaxy	Introduction to Galaxy Analyses	2023-11-09			Hands-on
Introduction to the Dataverse Integration in Galaxy	Introduction to Galaxy Analyses	2026-10-06			Hands-on
IGV Introduction	Introduction to Galaxy Analyses	2023-02-17			Hands-on
Best Practices for Citing Galaxy	Introduction to Galaxy Analyses	2026-08-28			Hands-on
Options for using Galaxy	Introduction to Galaxy Analyses	2022-09-23			Slides Video
How to reproduce published Galaxy analyses	Introduction to Galaxy Analyses	2026-09-23		Visualisation	Hands-on
Introduction to Genomics and Galaxy	Introduction to Galaxy Analyses	2026-05-17			Video Hands-on
Data Manipulation Olympics	Introduction to Galaxy Analyses	2026-09-23			Hands-on
NGS data logistics	Introduction to Galaxy Analyses	2026-09-23		Validation Formatting Sequence contamination filtering Generation Genome indexing Sequence alignment Sequencing quality control SNP detection Data handling Read mapping	Video Hands-on
From peaks to genes	Introduction to Galaxy Analyses	2026-09-23			Video Hands-on
Very Short Introductions: QC	Introduction to Galaxy Analyses	2026-09-23		Sequence contamination filtering Sequencing quality control Validation	Hands-on
Introduction to Galaxy as an RDM platform	Introduction to Galaxy Analyses	2026-09-23		Visualisation	Hands-on
Galaxy Basics for everyone	Introduction to Galaxy Analyses	2026-09-23		Visualisation	Video Hands-on
Galaxy Basics for genomics	Introduction to Galaxy Analyses	2026-09-23		Mapping	Video Hands-on
A short introduction to Galaxy	Introduction to Galaxy Analyses	2026-09-23		Sequence composition calculation Sequencing quality control Statistical calculation	Slides Video Hands-on
Introduction to Galaxy	Introduction to Galaxy Analyses	2025-09-23			Slides
AI pipeline for annotating marine species (Project Moorev - Marine)	Imaging	2026-09-23			Hands-on
Introduction to Image Analysis using Galaxy	Imaging	2026-09-23		Image annotation Data handling Visualisation Image analysis	Hands-on
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools	Imaging	2026-06-01		Image annotation Data handling Visualisation Image analysis	Hands-on
Quantitative Analysis of Histological Staining Using Color Deconvolution	Imaging	2026-09-23		Image annotation Data handling Visualisation Image analysis	Hands-on
Segmentation of Anatomical Structures in Medical 3-D Images	Imaging	2026-09-23		Image annotation Data handling Visualisation Image analysis	Hands-on
Execute a BiaPy workflow in Galaxy	Imaging	2026-09-23		Image analysis	Hands-on
Tracking of mitochondria and capturing mitoflashes	Imaging	2026-09-23		Image analysis	Hands-on
Training Custom YOLO Models for Segmentation of Bioimages	Imaging	2026-09-23		Image annotation Visualisation Image analysis Data handling	Hands-on
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM	Imaging	2026-09-23		Image analysis	Hands-on
Use Pycytominer in Galaxy for processing high dimensional image-based readouts	Imaging	2026-10-08			Hands-on
End-to-End Tissue Microarray Image Analysis with Galaxy-ME	Imaging	2026-09-23			Hands-on
Where to start with bioimage analysis in Galaxy	Imaging	2026-08-24		Image annotation Data handling Formatting Parsing Visualisation Image analysis Quantification	Hands-on
Nucleoli segmentation and feature extraction using CellProfiler	Imaging	2025-11-26		Parsing Image analysis Quantification	Slides Hands-on
Using BioImage.IO models for image analysis in Galaxy	Imaging	2026-09-03		Image analysis	Hands-on
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy	Imaging	2026-01-21		Image annotation Data handling Visualisation Image analysis	Hands-on
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines	Imaging	2025-11-26		Image annotation Data handling Visualisation Image analysis	Hands-on
Analyse HeLa fluorescence siRNA screen	Imaging	2026-09-23		Image annotation Data handling Visualisation Image analysis	Hands-on
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy	Imaging	2026-09-23		Image analysis	Hands-on
Voronoi segmentation	Imaging	2026-09-23		Image annotation Data handling Visualisation Image analysis	Hands-on
Object tracking using CellProfiler	Imaging	2026-09-23		Parsing Image analysis Quantification	Hands-on
Genomic Data Visualisation with JBrowse2	Visualisation	2026-09-23		Pathway visualisation Genome visualisation Structure visualisation	Hands-on
Genomic Data Visualisation with JBrowse	Visualisation	2026-09-23		Genome visualisation	Slides Hands-on
Microbial Variant Calling	Variant Analysis	2026-09-23	Genomics Sequence assembly DNA polymorphism Microbiology Sequence analysis Genetic variation	Genome visualisation Variant calling Phylogenetic tree visualisation Phylogenetic tree generation	Hands-on
Dataset construction for bacterial comparative genomics	Genome Annotation	2026-09-23	Genomics Microbiology	Data handling Sequence database search Data retrieval	Hands-on
Pangenome analysis with Roary	Genome Annotation	2026-09-23	Genomics	Phylogenetic analysis Gene prediction Coding region prediction Genome annotation Genome assembly Sequence analysis	Hands-on
Bacterial genome quality control	Genome Annotation	2026-09-03	Genomics Microbiology	Validation Statistical calculation Genome comparison Sequence assembly validation Sequence composition calculation Sequencing quality control	Hands-on
Genome Annotation	Genome Annotation	2026-09-23			Hands-on
Bacterial pangenomics	Genome Annotation	2026-09-23	Genomics Microbiology	Rarefaction Essential dynamics Sequence assembly Genome annotation	Hands-on
Creating an Official Gene Set	Genome Annotation	2024-02-29			Hands-on
From small to large-scale genome comparison	Genome Annotation	2026-09-23		Multiple sequence alignment	Slides Hands-on
Genome annotation with Helixer	Genome Annotation	2026-09-23	Biodiversity Genomics Zoology Plant biology	Genome visualisation Differential protein expression profiling Sequence assembly validation Genome annotation Gene prediction Sequence annotation	Hands-on
Genome annotation with Braker3	Genome Annotation	2026-09-23	Sequence assembly Genomics Biodiversity Zoology Plant biology	Genome visualisation Differential protein expression profiling Sequence alignment Sequence assembly validation Genome annotation Gene prediction Sequence annotation	Hands-on
Identification of AMR genes in an assembled bacterial genome	Genome Annotation	2026-09-23	Whole genome sequencing Public health and epidemiology Genomics Microbiology Sequence analysis Infectious disease Antimicrobial resistance	Antimicrobial resistance prediction Genome visualisation Genome annotation Read mapping	Video Hands-on
Comparison of two annotation tools - Helixer and Braker3	Genome Annotation	2026-09-23	Sequence assembly Genomics	Genome visualisation Differential protein expression profiling Sequence alignment Sequence assembly validation Genome annotation Gene prediction Sequence annotation	Hands-on
Refining Genome Annotations with Apollo (prokaryotes)	Genome Annotation	2026-09-23	Genomics Microbiology Gene and protein families Sequence analysis	Genome visualisation	Slides Video Hands-on
Bacterial Genome Annotation	Genome Annotation	2026-09-23	Genomics Microbiology Gene and protein families Sequence analysis Whole genome sequencing Functional genomics Mobile genetic elements	Scaffolding Sequence motif recognition Multilocus sequence typing Structural variation detection Protein feature detection Genome visualisation Nucleic acid feature detection Genome annotation Genome assembly	Video Hands-on
Secondary metabolite discovery	Genome Annotation	2026-09-23		Sequence clustering Data handling Gene prediction Service invocation Differential gene expression analysis	Hands-on
Genome annotation with Prokka	Genome Annotation	2026-09-23	Genomics Microbiology Gene and protein families Sequence analysis	Genome visualisation Genome annotation Gene prediction Coding region prediction	Slides Video Hands-on
CRISPR screen analysis	Genome Annotation	2026-09-23		Sequence trimming Validation Read pre-processing Sequencing quality control Statistical calculation Genetic variation analysis Primer removal Sequence composition calculation	Slides Video Hands-on
Long non-coding RNAs (lncRNAs) annotation with FEELnc	Genome Annotation	2026-09-23		Transcriptome assembly Annotation Sequence annotation RNA-Seq analysis Classification	Video Hands-on
Refining Genome Annotations with Apollo (eukaryotes)	Genome Annotation	2026-09-23	Genomics	Genome visualisation	Hands-on
Functional annotation of protein sequences	Genome Annotation	2026-09-23	Function analysis Protein sites, features and motifs	Sequence motif recognition Information extraction Sequence alignment analysis Fold recognition Homology-based gene prediction Query and retrieval Genome annotation Protein feature detection	Hands-on
Genome annotation with Maker	Genome Annotation	2026-09-23		Ab-initio gene prediction Operation Sequence annotation Genome visualisation Homology-based gene prediction Sequence assembly validation Genome annotation Gene prediction	Hands-on
Essential genes detection with Transposon insertion sequencing	Genome Annotation	2026-09-23	Genomics Microbiology Sequence analysis Mobile genetic elements	Sequence trimming Read pre-processing Primer removal Transposon prediction	Slides Hands-on
Genome annotation with Maker (short)	Genome Annotation	2026-09-23		Genome visualisation Sequence assembly validation Genome annotation Sequence annotation	Hands-on
Genome annotation with Funannotate	Genome Annotation	2026-09-23	Gene and protein families	Sequence motif recognition Formatting Sequence alignment Sequence annotation Protein feature detection Genome visualisation Information extraction Fold recognition Homology-based gene prediction Query and retrieval Sequence assembly validation Genome annotation	Video Hands-on
Comparative gene analysis in unannotated genomes	Genome Annotation	2026-09-23	Genomics Gene and protein families Sequence analysis Phylogeny Comparative genomics	Transcriptome assembly Sequence alignment analysis Coding region prediction Multiple sequence alignment De-novo assembly Phylogenetic tree generation Database search	Hands-on
Introduction to Genome Annotation	Genome Annotation	2025-04-23			Slides
Masking repeats with RepeatMasker	Genome Annotation	2026-09-23	Sequence composition, complexity and repeats Genomics	Mapping Repeat sequence detection Editing Genome annotation RNA-Seq analysis	Video Hands-on
Exporting to Onedata remote	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Onedata user-owned storage	Using Galaxy and Managing your Data	2025-04-08			Hands-on
RStudio in Galaxy	Using Galaxy and Managing your Data	2026-02-25			Hands-on
Extracting Workflows from Histories	Using Galaxy and Managing your Data	2026-07-23			Hands-on
Getting started with Onedata distributed storage	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Rule Based Uploader: Advanced	Using Galaxy and Managing your Data	2024-06-14			Video Hands-on
Use Jupyter notebooks in Galaxy	Using Galaxy and Managing your Data	2026-09-23			Video Hands-on
Understanding Galaxy history system	Using Galaxy and Managing your Data	2026-07-23			Video Hands-on
JupyterLab in Galaxy	Using Galaxy and Managing your Data	2025-04-25			Hands-on
Searching Your History	Using Galaxy and Managing your Data	2023-11-16			Hands-on
Importing (uploading) data from Onedata	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Rule Based Uploader	Using Galaxy and Managing your Data	2026-09-23			Video Hands-on
Accessing IIIF from within Galaxy	Using Galaxy and Managing your Data	2026-08-13			Hands-on
Using dataset collections	Using Galaxy and Managing your Data	2026-09-23		Genome indexing Sequence alignment Read mapping Generation	Video Hands-on
Name tags for following complex histories	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Creating high resolution images of Galaxy Workflows	Using Galaxy and Managing your Data	2025-04-08			Hands-on
Group tags for complex experimental designs	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Downloading and Deleting Data in Galaxy	Using Galaxy and Managing your Data	2026-01-23			Hands-on
Annotate, prepare tests and publish Galaxy workflows in workflow registries	Using Galaxy and Managing your Data	2025-05-26		Validation Visualisation Read mapping Sequencing quality control	Hands-on
Getting data into Galaxy	Using Galaxy and Managing your Data	2022-10-18			Slides
Galaxy workflows in Dockstore	Using Galaxy and Managing your Data	2022-10-27			Slides
Using Workflow Parameters	Using Galaxy and Managing your Data	2024-06-14			Video Hands-on
InterMine integration with Galaxy	Using Galaxy and Managing your Data	2026-09-23			Hands-on
Creating, Editing and Importing Galaxy Workflows	Using Galaxy and Managing your Data	2023-11-09			Hands-on
Workflow Reports	Using Galaxy and Managing your Data	2024-06-14		Visualisation	Video Hands-on
Uploading Data to Zenodo from Galaxy	FAIR Data, Workflows, and Research	2025-11-06			Hands-on
Integrating InvenioRDM-compatible Repositories with Galaxy	FAIR Data, Workflows, and Research	2025-11-06			Hands-on
An earth-system RO-Crate	FAIR Data, Workflows, and Research	2024-12-02			Slides Video
FAIRification of an RNAseq dataset	FAIR Data, Workflows, and Research	2026-05-28			Hands-on
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data	FAIR Data, Workflows, and Research	2025-11-27			Video Hands-on
Persistent Identifiers	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Access	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Submitting workflows to LifeMonitor	FAIR Data, Workflows, and Research	2024-09-26			Hands-on
FAIR Bioimage Metadata	FAIR Data, Workflows, and Research	2025-11-27			Hands-on
Best practices for workflows in GitHub repositories	FAIR Data, Workflows, and Research	2025-04-08			Hands-on
Data Registration	FAIR Data, Workflows, and Research	2024-09-27			Hands-on
FAIR data management solutions	FAIR Data, Workflows, and Research	2025-01-16			Hands-on
RO-Crate in Python	FAIR Data, Workflows, and Research	2025-04-08			Hands-on
Metadata	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
Exporting Workflow Run RO-Crates from Galaxy	FAIR Data, Workflows, and Research	2026-09-21		Visualisation	Hands-on
DataPLANT ARCs	FAIR Data, Workflows, and Research	2026-09-23			Slides Video Hands-on
Sequence data submission to ENA	FAIR Data, Workflows, and Research	2024-06-25			Hands-on
RO-Crate - Introduction	FAIR Data, Workflows, and Research	2025-04-08			Video Hands-on
Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub	FAIR Data, Workflows, and Research	2024-09-13			Video Hands-on
Workflow Run RO-Crate Introduction	FAIR Data, Workflows, and Research	2023-05-11			Hands-on
Making clinical datasets FAIR	FAIR Data, Workflows, and Research	2024-09-13			Video Hands-on
FAIR and its Origins	FAIR Data, Workflows, and Research	2024-03-27			Hands-on
FAIR in a nutshell	FAIR Data, Workflows, and Research	2024-04-30			Hands-on
Phylogenetic analysis for bacterial comparative genomics	Evolution	2026-09-23	Genomics Microbiology Phylogeny		Hands-on
Identifying tuberculosis transmission links: from SNPs to transmission clusters	Evolution	2025-05-26	Genomics Microbiology Infectious disease DNA polymorphism	Antimicrobial resistance prediction Variant calling Phylogenetic tree visualisation Phylogenetic tree generation	Hands-on
Tree thinking for tuberculosis evolution and epidemiology	Evolution	2025-06-04	Genomics Microbiology Phylogeny Infectious disease	Phylogenetic tree analysis Sequence analysis	Hands-on
Phylogenetics - Back to Basics - Phylogenetic Networks	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Estimating trees from alignments	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Building Trees	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Multiple Sequence Alignment	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Terminology	Evolution	2024-05-10			Slides
Phylogenetics - Back to Basics - Introduction	Evolution	2024-05-10			Slides
Phylogenetics - Back to basics	Evolution	2026-09-23		Phylogenetic analysis Phylogenetic tree reconstruction Multiple sequence alignment Phylogenetic tree analysis Phylogenetic tree generation Sequence analysis	Hands-on
DNA Methylation data analysis	Epigenetics	2026-09-23	Epigenomics	Statistical calculation Visualisation Read mapping Sequence composition calculation Sequencing quality control	Hands-on
CUT&RUN data analysis	Epigenetics	2026-09-28		Validation Sequence trimming Enrichment analysis Sequence alignment analysis Formatting Read pre-processing Gene regulatory network analysis Sequencing quality control Peak calling Data handling Mapping Primer removal Visualisation Read mapping	Hands-on
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer	Epigenetics	2026-09-23		Visualisation Read mapping Formatting	Hands-on
ATAC-Seq data analysis	Epigenetics	2026-09-28		Sequence trimming Enrichment analysis Sequence alignment analysis Read pre-processing Formatting Gene regulatory network analysis Sequencing quality control Peak calling Data handling Mapping Primer removal Visualisation Read mapping	Slides Video Hands-on
Identification of the binding sites of the Estrogen receptor	Epigenetics	2026-09-23		Sequence trimming Enrichment analysis Read pre-processing Gene regulatory network analysis Sequencing quality control Peak calling Statistical calculation Primer removal Read mapping Sequence composition calculation	Hands-on
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)	Epigenetics	2026-09-30	ChIP-seq	Enrichment analysis Formatting Gene regulatory network analysis Genome indexing Generation Sequence alignment Sequencing quality control Peak calling Mapping Visualisation Read mapping	Hands-on
Infinium Human Methylation BeadChip	Epigenetics	2026-09-23			Slides Hands-on
Formation of the Super-Structures on the Inactive X	Epigenetics	2026-10-08		Sequence trimming Enrichment analysis Read pre-processing Gene regulatory network analysis Sequencing quality control Peak calling Pathway visualisation Genome visualisation Mapping Primer removal Visualisation Read mapping Structure visualisation	Slides Hands-on
Introduction to DNA Methylation data analysis	Epigenetics	2024-03-05			Slides
Introduction to ChIP-Seq data analysis	Epigenetics	2024-03-05			Slides
Foundational Aspects of Machine Learning using Python	Statistics and Machine Learning	2025-05-19			Hands-on
Training techniques to enhance learner participation and engagement	Teaching and Hosting Galaxy Training	2025-03-11			Hands-on
Motivation and Demotivation	Teaching and Hosting Galaxy Training	2025-03-11			Hands-on
Train-the-Trainer: putting it all together	Teaching and Hosting Galaxy Training	2025-03-11			Hands-on
Assessment and feedback in training and teachings	Teaching and Hosting Galaxy Training	2025-03-11			Hands-on
Regulations/standards for AI using DOME	Statistics and Machine Learning	2025-05-19			Slides Hands-on
Optimizing DNA Sequences for Biological Functions using a DNA LLM	Statistics and Machine Learning	2025-05-22			Hands-on
Generating Artificial Yeast DNA Sequences using a DNA LLM	Statistics and Machine Learning	2025-05-22			Hands-on
Deep Learning (without Generative Artificial Intelligence) using Python	Statistics and Machine Learning	2025-03-11			Slides Hands-on
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM	Statistics and Machine Learning	2025-05-22			Hands-on
Neural networks using Python	Statistics and Machine Learning	2025-03-11			Slides Hands-on
Fine-tuning a LLM for DNA Sequence Classification	Statistics and Machine Learning	2025-05-22			Hands-on
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences	Statistics and Machine Learning	2026-07-13			Hands-on
QGIS Web Feature Services	Ecology	2026-05-07			Hands-on
Cleaning GBIF data using OpenRefine	Ecology	2026-05-07			Hands-on
Visualize EBV cube data with Panoply netCDF viewer	Ecology	2026-05-07			Hands-on
Audio data annotation with NEAL (Nature + Energy Audio labeler)	Ecology	2025-11-06			Hands-on
RAD-Seq to construct genetic maps	Ecology	2026-09-23		Data handling	Hands-on
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities	Ecology	2026-09-23			Hands-on
Taxonomic Analysis of eDNA	Ecology	2026-09-23		Sequence contamination filtering Sequencing quality control	Hands-on
RAD-Seq Reference-based data analysis	Ecology	2026-09-23		Validation Genome indexing Generation Sequence alignment Sequencing quality control Data handling Statistical calculation Read mapping Sequence composition calculation	Hands-on
Regional GAM	Ecology	2026-09-23	Ecology	Visualisation	Hands-on
Champs blocs indicators	Ecology	2026-05-07			Hands-on
Ecoregionalization workflow tutorial	Ecology	2026-05-22			Hands-on
From NDVI data with OpenEO to time series visualisation with Holoviews	Ecology	2024-06-29			Hands-on
Data submission using ENA upload Tool	Ecology	2026-07-24		Sequence trimming Validation Visualisation Read pre-processing Primer removal Read mapping Sequencing quality control	Hands-on
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS	Ecology	2026-09-23			Hands-on
Preparing genomic data for phylogeny reconstruction	Ecology	2026-09-23		Sequence trimming Sequence clustering Genetic variation analysis Sequence assembly validation Genome annotation Multiple sequence alignment Sequence analysis	Hands-on
Obis marine indicators	Ecology	2026-05-19	Biodiversity Ecology Data mining		Hands-on
Marine Omics identifying biosynthetic gene clusters	Ecology	2025-06-03		Sequence motif recognition Genome annotation Protein feature detection	Hands-on
RAD-Seq de-novo data analysis	Ecology	2026-09-23		Data handling Statistical calculation Sequence composition calculation Sequencing quality control	Hands-on
Compute and analyze biodiversity metrics with PAMPA toolsuite	Ecology	2026-09-23			Video Hands-on
Life Traits Ecoregionalization workflow	Ecology	2026-05-07			Hands-on
Cleaning GBIF data for the use in Ecology	Ecology	2025-06-03			Hands-on
Visualization of Climate Data using NetCDF xarray Map Plotting	Ecology	2026-09-23			Hands-on
Sentinel 2 biodiversity	Ecology	2025-12-08			Hands-on
Checking expected species and contamination in bacterial isolate	Ecology	2026-04-08	Whole genome sequencing Genomics Microbiology Microbial ecology	Taxonomic classification Statistical calculation Expression analysis Cross-assembly	Hands-on
Species distribution modeling	Ecology	2026-05-07			Hands-on
Metabarcoding/eDNA through Obitools	Ecology	2026-09-23		Sequence composition calculation Sequencing quality control Statistical calculation	Video Hands-on
Phylodiversity analysis quick tutorial	Ecology	2026-09-23			Hands-on
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos	Ecology	2026-05-12			Hands-on
Biodiversity data exploration	Ecology	2026-09-23			Video Hands-on
Object detection with YOLO	Ecology	2026-05-08			Hands-on
Text-Mining articles with GROBID	Digital Humanities	2026-08-13			Hands-on
Analysing Solar Eclipse Frequency with a Galaxy Workflow	Digital Humanities	2026-10-07			Hands-on
Transcribing Audio and Video files with Automated Speech Recognition	Digital Humanities	2026-09-23			Hands-on
OpenRefine Tutorial for researching cultural data	Digital Humanities	2026-09-23			Hands-on
Text-Mining Differences in Chinese Newspaper Articles	Digital Humanities	2026-09-23			Hands-on
Montreal Forced Aligner	Digital Humanities	2026-09-23			Hands-on
Introduction to Digital Humanities in Galaxy	Digital Humanities	2026-09-23			Hands-on
Galaxy Interactive Tools	Development in Galaxy	2026-10-08			Hands-on
Contributing to BioBlend as a developer	Development in Galaxy	2023-11-09			Hands-on
Understanding Galaxy Data Managers	Development in Galaxy	2026-10-06			Hands-on
Data source integration	Development in Galaxy	2022-10-18			Hands-on
Writing Automated Tests for Galaxy	Development in Galaxy	2026-02-19			Hands-on
Debugging Galaxy	Development in Galaxy	2026-02-19			Hands-on
ToolFactory: Generating Tools From More Complex Scripts	Development in Galaxy	2024-09-27			Video Hands-on
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks	Development in Galaxy	2025-12-04			Hands-on
Creating Galaxy tools from Conda Through Deployment	Development in Galaxy	2024-10-08			Video Hands-on
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry	Development in Galaxy	2024-11-06			Hands-on
Contributing a New Feature to Galaxy Core	Development in Galaxy	2026-02-19			Hands-on
Setting up a dev Onedata instance	Development in Galaxy	2025-04-08			Hands-on
Architecture 15 - Galaxy Production Deployment	Development in Galaxy	2026-10-08			Slides
Architecture 14 - Galaxy Startup Process	Development in Galaxy	2026-02-19			Slides
ToolFactory: Generating Tools From Simple Scripts	Development in Galaxy	2024-06-14			Slides Video Hands-on
Galaxy Webhooks	Development in Galaxy	2025-04-08			Slides Hands-on
Tool Shed: sharing Galaxy tools	Development in Galaxy	2022-10-18			Slides
Tool Dependencies and Containers	Development in Galaxy	2022-10-18			Slides
Architecture 12 - Galaxy Client Architecture	Development in Galaxy	2026-02-19			Slides
Architecture 11 - Galaxy Markdown Architecture	Development in Galaxy	2026-02-19			Slides
Prerequisites for building software/conda packages	Development in Galaxy	2021-05-28			Slides
Architecture 13 - Galaxy Dependencies Management	Development in Galaxy	2026-02-19			Slides
Architecture 06 - Dependency Injection in Galaxy	Development in Galaxy	2026-02-19			Slides
Architecture 08 - Galaxy Application Components: Models, Managers, and Services	Development in Galaxy	2026-02-19			Slides
Architecture 16 - Galaxy Testing	Development in Galaxy	2026-10-08			Slides
Scripting Galaxy using the API and BioBlend	Development in Galaxy	2023-11-16			Slides Video Hands-on
Architecture 05 - Galaxy Web Frameworks	Development in Galaxy	2026-02-19			Slides
JavaScript plugins	Development in Galaxy	2025-04-08			Slides Hands-on
Architecture 10 - Galaxy File Sources Architecture	Development in Galaxy	2026-02-19			Slides
Tool development and integration into Galaxy	Development in Galaxy	2025-04-08			Slides Hands-on
Architecture 02 - Galaxy Project Management and Contribution	Development in Galaxy	2026-02-19			Slides
Architecture 09 - Galaxy Plugin Architecture	Development in Galaxy	2026-02-19			Slides
Galaxy Interactive Tours	Development in Galaxy	2021-07-27			Slides
Architecture 07 - Galaxy Task Management with Celery	Development in Galaxy	2026-02-19			Slides
Galaxy Interactive Environments	Development in Galaxy	2023-02-17			Slides
Tool Dependencies and Conda	Development in Galaxy	2023-04-14			Slides
Architecture 04 - Galaxy Files and Directory Structure	Development in Galaxy	2026-02-19			Slides
Architecture 01 - Galaxy Ecosystem and Projects	Development in Galaxy	2026-02-19			Slides
Generic plugins	Development in Galaxy	2023-11-09			Slides Hands-on
Architecture 03 - Galaxy Architecture Principles	Development in Galaxy	2026-02-19			Slides
SQL with R	Foundations of Data Science	2023-11-16			Hands-on
Make & Snakemake	Foundations of Data Science	2026-09-23			Hands-on
CLI Educational Game - Bashcrawl	Foundations of Data Science	2024-10-15			Hands-on
SQL with Python	Foundations of Data Science	2023-11-16			Hands-on
Introduction to SQL	Foundations of Data Science	2024-12-13			Hands-on
SQL Educational Game - Murder Mystery	Foundations of Data Science	2023-11-23			Hands-on
One protein along the UniProt page	Foundations of Data Science	2026-03-30			Hands-on
Variant Calling Workflow	Foundations of Data Science	2023-10-23			Hands-on
Advanced CLI in Galaxy	Foundations of Data Science	2024-10-15			Hands-on
Advanced SQL	Foundations of Data Science	2024-12-13			Hands-on
Version Control with Git	Foundations of Data Science	2023-10-23			Hands-on
Basics of using Git from the Command Line	Foundations of Data Science	2023-11-16			Hands-on
CLI basics	Foundations of Data Science	2024-10-15			Hands-on
Learning about one gene across biological resources and formats	Foundations of Data Science	2026-09-23			Slides Video Hands-on
Python - Multiprocessing	Foundations of Data Science	2023-11-16			Hands-on
Python - Coding Style	Foundations of Data Science	2023-05-18			Hands-on
Python - Subprocess	Foundations of Data Science	2023-02-13			Hands-on
Python - Globbing	Foundations of Data Science	2023-02-13			Hands-on
Conda Environments For Software Development	Foundations of Data Science	2023-05-18			Hands-on
Python - Argparse	Foundations of Data Science	2023-01-24			Hands-on
Python - Testing	Foundations of Data Science	2023-02-13			Hands-on
Python - Type annotations	Foundations of Data Science	2023-02-13			Hands-on
Virtual Environments For Software Development	Foundations of Data Science	2023-05-18			Hands-on
Python - Introductory Graduation	Foundations of Data Science	2023-02-13			Hands-on
Python - Try & Except	Foundations of Data Science	2023-02-13			Hands-on
Versioning your code and data with git	Foundations of Data Science	2024-03-12			Hands-on
Python - Files & CSV	Foundations of Data Science	2023-02-13			Hands-on
Data manipulation with Pandas	Foundations of Data Science	2025-02-27			Hands-on
Python - Loops	Foundations of Data Science	2023-02-13			Hands-on
Python - Flow Control	Foundations of Data Science	2023-02-13			Hands-on
Introduction to sequencing with Python (part four)	Foundations of Data Science	2024-02-20			Hands-on
Python - Lists & Strings & Dictionaries	Foundations of Data Science	2024-06-25			Hands-on
Introduction to sequencing with Python (part three)	Foundations of Data Science	2024-02-20			Hands-on
Data Manipulation Olympics - JQ	Foundations of Data Science	2024-05-07			Hands-on
Python - Basic Types & Type Conversion	Foundations of Data Science	2023-02-13			Hands-on
Introduction to sequencing with Python (part two)	Foundations of Data Science	2024-02-20			Hands-on
Plotting in Python	Foundations of Data Science	2026-09-23			Hands-on
Data Manipulation Olympics - SQL	Foundations of Data Science	2024-05-07			Hands-on
dplyr & tidyverse for data processing	Foundations of Data Science	2026-09-23			Hands-on
Introduction to sequencing with Python (part one)	Foundations of Data Science	2024-02-20			Hands-on
Advanced Python	Foundations of Data Science	2026-09-23			Hands-on
Data visualisation Olympics - Visualization in R	Foundations of Data Science	2024-05-07			Hands-on
Advanced R in Galaxy	Foundations of Data Science	2024-10-15			Video Hands-on
Python - Functions	Foundations of Data Science	2023-02-13			Hands-on
R basics in Galaxy	Foundations of Data Science	2024-06-14			Video Hands-on
Python - Math	Foundations of Data Science	2023-02-13			Hands-on
Introduction to Python	Foundations of Data Science	2024-10-15			Hands-on
Python - Warm-up for statistics and machine learning	Foundations of Data Science	2025-03-11			Hands-on
A (very) brief history of genomics	Foundations of Data Science	2024-02-20			Slides Hands-on
SARS-CoV-2 Viral Sample Alignment and Variant Visualization	Sequence Analysis	2026-09-23		Genome indexing Sequence alignment Generation Sequencing quality control Genome visualisation Statistical calculation Read mapping Sequence composition calculation	Hands-on
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis	Using Galaxy and Managing your Data	2024-06-14		Data handling SNP detection	Slides Video Hands-on
Removal of human reads from SARS-CoV-2 sequencing data	Sequence Analysis	2023-11-09		Data handling Generation Genome indexing Sequence alignment Read mapping Sequence file editing	Hands-on
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data	Variant Analysis	2025-03-28		Variant classification Variant calling Methylation analysis Tree-based sequence alignment	Video Hands-on
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis	Variant Analysis	2024-06-14		Validation Formatting Sequence contamination filtering Genome indexing Sequence alignment Generation SNP detection Sequencing quality control Data handling Read mapping	Video Hands-on
Submitting sequence data to ENA	Using Galaxy and Managing your Data	2026-10-08			Slides Hands-on
Automating Galaxy workflows using the command line	Using Galaxy and Managing your Data	2025-12-18		Validation Tree-based sequence alignment Sequence contamination filtering Visualisation Read mapping Variant classification Sequencing quality control	Video Hands-on
GTN Metadata	Contributing to the Galaxy Training Material	2024-10-15			Hands-on
Adding auto-generated video to your slides	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Adding Quizzes to your Tutorial	Contributing to the Galaxy Training Material	2022-10-18			Hands-on
Generating PDF artefacts of the website	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Updating diffs in admin training	Contributing to the Galaxy Training Material	2023-11-23			Hands-on
Creating Interactive Galaxy Tours	Contributing to the Galaxy Training Material	2025-04-08			Hands-on
Contributing with GitHub via its interface	Contributing to the Galaxy Training Material	2023-11-09			Hands-on
Teaching Python	Contributing to the Galaxy Training Material	2023-11-23			Hands-on
Tools, Data, and Workflows for tutorials	Contributing to the Galaxy Training Material	2025-04-08			Hands-on
Principles of learning and how they apply to training and teaching	Contributing to the Galaxy Training Material	2025-03-11			Hands-on
Including a new topic	Contributing to the Galaxy Training Material	2025-12-01			Hands-on
Design and plan session, course, materials	Contributing to the Galaxy Training Material	2025-03-11			Hands-on
Contributing to the Galaxy Training Network with GitHub	Contributing to the Galaxy Training Material	2025-03-14			Slides Hands-on
Updating tool versions in a tutorial	Contributing to the Galaxy Training Material	2024-11-29			Hands-on
Creating Slides	Contributing to the Galaxy Training Material	2024-11-08			Slides Video
Creating content in Markdown	Contributing to the Galaxy Training Material	2025-04-08		Validation Sequencing quality control	Hands-on
FAIR Galaxy Training Material	FAIR Data, Workflows, and Research	2026-09-23			Hands-on
Single Cell Publication - Data Plotting	Contributing to the Galaxy Training Material	2024-11-07			Hands-on
Single Cell Publication - Data Analysis	Contributing to the Galaxy Training Material	2024-11-07			Hands-on
Creating a new tutorial	Contributing to the Galaxy Training Material	2025-11-20		Sequence trimming Data handling Read pre-processing Primer removal Read mapping Sequence file editing	Video Hands-on
Preview the GTN website as you edit your training material	Contributing to the Galaxy Training Material	2026-02-04			Video Hands-on
FAIR-by-Design methodology	Contributing to the Galaxy Training Material	2026-10-08			Hands-on
Overview of the Galaxy Training Material	Contributing to the Galaxy Training Material	2025-03-14			Slides
Setting up molecular systems	Computational Chemistry	2023-11-09			Hands-on
Protein-ligand docking	Computational Chemistry	2026-07-23			Hands-on
Analysis of molecular dynamics simulations	Computational Chemistry	2023-11-09			Hands-on
High Throughput Molecular Dynamics and Analysis	Computational Chemistry	2026-09-23			Video Hands-on
Running molecular dynamics simulations using NAMD	Computational Chemistry	2023-11-09			Hands-on
Protein target prediction of a bioactive ligand with Align-it and ePharmaLib	Computational Chemistry	2024-06-14			Hands-on
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring	Computational Chemistry	2023-11-09			Hands-on
Running molecular dynamics simulations using GROMACS	Computational Chemistry	2023-11-09			Hands-on
Data management in Medicinal Chemistry	Computational Chemistry	2026-09-23			Video Hands-on
Creation of resources listing all the tools and their metadata relevant to your community	Galaxy Community Building	2026-04-30			Hands-on
Make your tools available on your subdomain	Galaxy Community Building	2024-12-20			Hands-on
Creation of resources listing Galaxy workflow for your community	Galaxy Community Building	2025-11-27			Hands-on
Creation of the labs in the different Galaxy instances for your community	Galaxy Community Building	2026-08-05			Hands-on
Creation of a Galaxy tutorial table for your community	Galaxy Community Building	2026-08-12			Hands-on
Creating a Special Interest Group	Galaxy Community Building	2024-12-20			Hands-on
Creating community content	Galaxy Community Building	2024-12-20			Hands-on
What's a Special Interest Group?	Galaxy Community Building	2024-12-20			Hands-on
Getting your hands-on earth data	Earth Data Science	2025-05-10			Hands-on
Ocean Data View (ODV)	Earth Data Science	2026-08-14			Hands-on
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab	Earth Data Science	2026-09-23			Hands-on
Visualize Climate data with Panoply netCDF viewer	Earth Data Science	2026-09-23			Hands-on
Collaboration with JupyterGIS	Earth Data Science	2026-08-14			Video Hands-on
Getting your hands-on climate data	Earth Data Science	2026-07-13		Visualisation	Hands-on
Functionally Assembled Terrestrial Ecosystem Simulator (FATES)	Earth Data Science	2026-09-23		Visualisation	Slides Video Hands-on
Pangeo Notebook in Galaxy - Introduction to Xarray	Earth Data Science	2026-09-23			Slides Video Hands-on
Analyse Argo data	Earth Data Science	2025-05-10			Hands-on
Sentinel 5P data visualisation	Earth Data Science	2026-08-14			Hands-on
Nitrate DMQC for autonomous platforms such as Argo floats	Earth Data Science	2025-09-16			Hands-on
Ocean's variables study	Earth Data Science	2025-05-10			Hands-on
Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools	Earth Data Science	2026-09-23		Visualisation	Slides Video Hands-on
Introduction to climate data	Earth Data Science	2026-07-13			Slides Video
An introduction to get started in genome assembly and annotation	Assembly	2026-09-23			Slides
Genome assembly and assembly QC - Introduction short version	Assembly	2026-09-23			Slides
Deeper look into Genome Assembly algorithms	Assembly	2026-09-23			Slides
De Bruijn Graph Assembly	Assembly	2026-09-23		Formatting De-novo assembly Sequence assembly visualisation Genome assembly Sequence assembly Optimisation and refinement	Slides Hands-on
Unicycler Assembly	Assembly	2026-09-23	Sequence assembly Genomics Microbiology	Validation Coding region prediction Genome annotation Sequencing quality control Genome assembly Statistical calculation Aggregation Visualisation Sequence assembly validation Sequence composition calculation Gene prediction	Slides Hands-on
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity	Sequence trimming Scaffolding Read pre-processing De-novo assembly Sequence alignment Phasing Data handling Mapping Pairwise sequence alignment Read binning Primer removal Visualisation Sequence assembly validation Genome assembly k-mer counting	Video Hands-on
ERGA post-assembly QC	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity	Sequence trimming Scaffolding Data parsing Sequence alignment Sequence assembly visualisation Phasing Data handling Pairwise sequence alignment k-mer counting Sequence assembly validation Sequence alignment analysis De-novo assembly Genotyping Visualisation Data deposition Genome assembly	Video Hands-on
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads	Assembly	2026-10-08		Validation Sequence contamination filtering Sequence assembly visualisation Sequencing quality control Sequence file editing Data handling Pairwise sequence alignment Aggregation Box-Whisker plot plotting Read mapping Genome assembly Scatter plot plotting	Slides Video Hands-on
Making sense of a newly assembled genome	Assembly	2026-09-23	Sequence assembly Genomics Microbiology	Genome visualisation Mapping Sequence visualisation Sequence alignment Read mapping	Hands-on
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data	Assembly	2026-09-23	Sequence assembly Chromosome conformation capture	Visualisation Sequence assembly validation	Video Hands-on
Decontamination of a genome assembly	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity	Data handling Taxonomic classification	Video Hands-on
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)	Assembly	2026-09-23	Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology Antimicrobial resistance	Read mapping Sequence contamination filtering Sequence alignment De-novo assembly Sequence assembly visualisation Sequencing quality control Sequencing error detection Mapping assembly Scatter plot plotting Statistical calculation Box-Whisker plot plotting Visualisation Sequence assembly validation Sequence composition calculation Genome assembly Filtering Cross-assembly	Hands-on
Chloroplast genome assembly	Assembly	2026-09-23		Analysis Coding region prediction Read alignment Genome indexing Sequence alignment Generation Sequence assembly visualisation De-novo assembly Sequence assembly Mapping assembly Genome visualisation Genome assembly Box-Whisker plot plotting Scatter plot plotting Read mapping Genome annotation Gene prediction Cross-assembly	Video Hands-on
Genome assembly using PacBio data	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity	Cross-assembly De-novo assembly Visualisation Sequence assembly validation Genome assembly Mapping assembly	Hands-on
Genome Assembly Quality Control	Assembly	2026-09-23	Biodiversity Sequence assembly Data quality management	Scaffolding Visualisation De-novo assembly k-mer counting Sequence assembly validation Genome assembly Phasing	Slides Hands-on
Large genome assembly and polishing	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity	Validation Sequence contamination filtering De-novo assembly Sequence assembly visualisation Sequencing quality control Scatter plot plotting Mapping assembly Variant calling Base-calling Sequence assembly Pairwise sequence alignment Statistical calculation Box-Whisker plot plotting Visualisation Sequence assembly validation Sequence composition calculation Genome assembly Cross-assembly	Video Hands-on
Assembly of the mitochondrial genome from PacBio HiFi reads	Assembly	2026-09-23	Genomics Sequence assembly Biodiversity Mitochondria		Video Hands-on
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data	Assembly	2026-09-23	Sequence assembly Whole genome sequencing Public health and epidemiology Genomics Microbiology	Sequence contamination filtering Sequence assembly visualisation Sequencing quality control Visualisation Sequence assembly validation Genome assembly Read mapping	Video Hands-on
Hybrid genome assembly - Nanopore and Illumina	Assembly	2026-09-23		Validation Analysis Read alignment Genome indexing Sequence alignment Generation De-novo assembly Sequencing quality control Sequence assembly Mapping assembly Aggregation Visualisation Sequence assembly validation Genome assembly Read mapping Cross-assembly	Hands-on
An Introduction to Genome Assembly	Assembly	2026-09-23		Validation Formatting De-novo assembly Sequencing quality control Statistical calculation Visualisation Sequence assembly validation Sequence composition calculation	Slides Video Hands-on
Contribute to the BioImage.IO models	Image Analysis using Deep Learning	2023-05-24			Slides Video
BioImage Model Zoo: Advanced models in one-click	Image Analysis using Deep Learning	2023-05-24			Slides Video
Welcome to the BioImage Model Zoo	Image Analysis using Deep Learning	2023-05-18			Slides Video
Automation with Jenkins	Galaxy Server Administration	2022-10-18			Hands-on
Customizing the look of Galaxy	Galaxy Server Administration	2025-11-22			Hands-on
Customizing the look of Galaxy (Manual)	Galaxy Server Administration	2025-04-08			Hands-on
Mapping Jobs to Destinations using TPV	Galaxy Server Administration	2026-01-23			Video Hands-on
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)	Galaxy Server Administration	2025-04-08			Hands-on
Galaxy Database schema	Galaxy Server Administration	2025-04-08			Hands-on
Use Apptainer containers for running Galaxy jobs	Galaxy Server Administration	2026-07-12			Video Hands-on
How I learned to stop worrying and love the systemd	Galaxy Server Administration	2023-09-28			Hands-on
Reference Data with CVMFS without Ansible	Galaxy Server Administration	2026-07-12			Hands-on
Deploying a Beacon v1 in Galaxy	Galaxy Server Administration	2025-11-22			Hands-on
Galaxy Monitoring with Reports	Galaxy Server Administration	2026-01-23			Hands-on
Create a subdomain for your community on UseGalaxy.eu	Galaxy Server Administration	2024-12-13			Hands-on
Upgrading Galaxy	Galaxy Server Administration	2026-01-23			Video Hands-on
Alternative Celery Deployment for Galaxy	Galaxy Server Administration	2024-11-07			Hands-on
Performant Uploads with TUS	Galaxy Server Administration	2025-11-22			Video Hands-on
Adding file-sources to Galaxy	Galaxy Server Administration	2025-01-20			Hands-on
Monitoring Galaxy and Pulsar with Sentry	Galaxy Server Administration	2025-12-18			Hands-on
Training Infrastructure as a Service (TIaaS)	Galaxy Server Administration	2025-11-24			Video Hands-on
Enable upload via FTP	Galaxy Server Administration	2025-12-18			Hands-on
uWSGI	Galaxy Server Administration	2022-03-01			Slides
Server: Other	Galaxy Server Administration	2023-02-17			Slides
Ansible	Galaxy Server Administration	2024-08-08			Slides Video Hands-on
Galaxy Administrator Time Burden and Technology Usage	Galaxy Server Administration	2026-10-08			Slides
Galaxy Monitoring with gxadmin	Galaxy Server Administration	2025-11-13			Slides Video Hands-on
Galaxy Interactive Tools	Galaxy Server Administration	2026-01-23			Slides Video Hands-on
Running Jobs on Remote Resources with Pulsar	Galaxy Server Administration	2026-01-23			Slides Video Hands-on
Gearing towards production	Galaxy Server Administration	2025-11-20			Slides Video
Galaxy Tool Management with Ephemeris	Galaxy Server Administration	2025-04-03			Slides Video Hands-on
Reference Data with Data Managers	Galaxy Server Administration	2026-01-23		Genome indexing Sequence alignment Read mapping Generation	Slides Hands-on
Data Libraries	Galaxy Server Administration	2025-11-24			Slides Video Hands-on
Advanced customisation of a Galaxy instance	Galaxy Server Administration	2023-04-17			Slides
Setting up Celery Workers for Galaxy	Galaxy Server Administration	2025-11-24			Slides Hands-on
Galactic Database	Galaxy Server Administration	2025-11-20			Slides Video
Galaxy Installation with Ansible	Galaxy Server Administration	2026-01-23	Database management Informatics Data management		Slides Video Hands-on
Docker and Galaxy	Galaxy Server Administration	2022-10-18			Slides
Server Maintenance: Cleanup, Backup, and Restoration	Galaxy Server Administration	2025-11-24	Database management Informatics Data management		Slides Video Hands-on
Empathy	Galaxy Server Administration	2021-04-06			Slides
Galaxy Monitoring	Galaxy Server Administration	2022-03-01			Slides
Galaxy Troubleshooting	Galaxy Server Administration	2024-06-25			Slides
Controlling Galaxy with systemd or Supervisor	Galaxy Server Administration	2023-04-16			Slides Video
Connecting Galaxy to a compute cluster	Galaxy Server Administration	2026-10-08			Slides Video Hands-on
Galaxy Monitoring with Telegraf and Grafana	Galaxy Server Administration	2026-04-29			Slides Video Hands-on
Distributed Object Storage	Galaxy Server Administration	2025-03-24			Slides Video Hands-on
External Authentication	Galaxy Server Administration	2022-10-18			Slides Hands-on
User, Role, Group, Quota, and Authentication managment	Galaxy Server Administration	2024-08-08			Slides Video
Reference Data with CVMFS	Galaxy Server Administration	2026-07-12			Slides Video Hands-on
Deploying a compute cluster in OpenStack via Terraform	Galaxy Server Administration	2024-12-19			Slides Hands-on
Deploying Wireguard for private mesh networking	Galaxy Server Administration	2024-12-19			Hands-on
Deploying Tailscale/Headscale for private mesh networking	Galaxy Server Administration	2024-12-19	Data security Software engineering		Hands-on
Pulsar usage on SURF Research Cloud	Galaxy Server Administration	2024-12-19	Informatics Data management		Hands-on
Galaxy usage on SURF Research Cloud	Galaxy Server Administration	2025-08-05	Informatics Data management		Hands-on
Managing Galaxy on Kubernetes	Galaxy Server Administration	2024-12-19			Hands-on
Galaxy Installation on Kubernetes	Galaxy Server Administration	2026-10-08			Hands-on
Galaxy from an administrator's point of view	Galaxy Server Administration	2026-10-08			Slides
Galaxy on the Cloud	Galaxy Server Administration	2024-12-19			Slides