Training

Visualisations in Galaxy

Friends Don't Let Friends Make Bad Graphs

Ploting a Microbial Genome with Circos

Visualisation with Circos

Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons

Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs)

Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates

Exome sequencing data analysis for diagnosing a genetic disease

Calling variants in non-diploid systems

Somatic Variant Discovery from WES Data Using Control-FREEC

Calling variants in diploid systems

Identification of somatic and germline variants from tumor and normal sample pairs

Trio Analysis using Synthetic Datasets from RD-Connect GPAP

Mapping and molecular identification of phenotype-causing mutations

Calling very rare variants

Introduction to Variant analysis

De novo transcriptome reconstruction with RNA-Seq

Pathway analysis with the MINERVA Platform

Reference-based RNA-Seq data analysis

Visualization of RNA-Seq results with Volcano Plot in R

RNA-seq Alignment with STAR

Reference-based RNAseq data analysis (long)

RNA Seq Counts to Viz in R

RNA-Seq analysis with AskOmics Interactive Tool

Visualization of RNA-Seq results with CummeRbund

Introduction to Transcriptomics

Visualization of RNA-Seq results with Volcano Plot

GO Enrichment Analysis

2: RNA-seq counts to genes

Network analysis with Heinz

Differential abundance testing of small RNAs

Small Non-coding RNA Clustering using BlockClust

1: RNA-Seq reads to counts

RNA-Seq data analysis, clustering and visualisation tutorial

Visualization of RNA-Seq results with heatmap2

De novo transcriptome assembly, annotation, and differential expression analysis

3: RNA-seq genes to pathways

Genome-wide alternative splicing analysis

CLIP-Seq data analysis from pre-processing to motif detection

RNA-RNA interactome data analysis

Live Coding is a Skill

Course Builder

Set up a Galaxy for Training

Running a workshop as an instructor

Training Infrastructure as a Service

Asynchronous training

Organizing a workshop

Hybrid training

Galaxy Admin Training

Teaching online

Teaching experiences

Workshop Kickoff

Overview of the Galaxy Training Material for Instructors

Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools

Designing plasmids encoding predicted pathways by using the BASIC assembly method

Evaluating and ranking a set of pathways based on multiple metrics

Introduction to Machine Learning using R

Supervised Learning with Hyperdimensional Computing

Fine tune large protein model (ProtTrans) using HuggingFace

Interval-Wise Testing for omics data

A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy

Unsupervised Analysis of Bone Marrow Cells with Flexynesis

Deep Learning (Part 2) - Recurrent neural networks (RNN)

Classification in Machine Learning

Identifing Survival Markers of Brain tumor with Flexynesis

Introduction to deep learning

Image classification in Galaxy with fruit 360 dataset

Deep Learning (Part 1) - Feedforward neural networks (FNN)

Building the LORIS LLR6 PanCancer Model Using PyCaret

Regression in Machine Learning

Modeling Breast Cancer Subtypes with Flexynesis

Age prediction using machine learning

Text-mining with the SimText toolset

PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis

Train and Test a Deep learning image classifier with Galaxy-Ludwig

Prepare Data from CbioPortal for Flexynesis Integration

Basics of machine learning

Deep Learning (Part 3) - Convolutional neural networks (CNN)

Clustering in Machine Learning

Machine learning: classification and regression

Automated Cell Annotation

Trajectory analysis

Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution

Inferring single cell trajectories with Monocle3

Inferring single cell trajectories with Monocle3 (R)

Single-cell Formats and Resources

Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution

Inferring single cell trajectories with Scanpy

Inferring single cell trajectories with Scanpy (Python)

Plates, Batches, and Barcodes

Multi-sample batch correction with Harmony and SnapATAC2

Evaluating Reference Data for Bulk RNA Deconvolution

Converting NCBI Data to the AnnData Format

Scanpy Parameter Iterator

Filter, plot, and explore single cell RNA-seq data with Seurat

Clustering 3K PBMCs with Seurat

Filter, plot and explore single-cell RNA-seq data with Scanpy

Filter, plot and explore single-cell RNA-seq data with Scanpy (Python)

Comparing inferred cell compositions using MuSiC deconvolution

Downstream Single-cell RNA analysis with RaceID

Understanding Barcodes

Filter, plot, and explore single cell RNA-seq data with Seurat (R)

Combining single cell datasets after pre-processing

Clustering 3K PBMCs with Scanpy

Single-cell ATAC-seq standard processing with SnapATAC2

Importing files from public atlases

Removing the effects of the cell cycle

Generating a single cell matrix using Alevin and combining datasets (bash + R)

An introduction to scRNA-seq data analysis

Pre-processing of 10X Single-Cell ATAC-seq Datasets

GO Enrichment Analysis on Single-Cell RNA-Seq Data

Single-cell quality control with scater

Pseudobulk Analysis with Decoupler and EdgeR

Pre-processing of Single-Cell RNA Data

Pre-processing of 10X Single-Cell RNA Datasets

Converting between common single cell data formats

Generating a single cell matrix using Alevin

Bulk RNA Deconvolution with MuSiC

Quality and contamination control in bacterial isolate using Illumina MiSeq Data

Screening assembled genomes for contamination using NCBI FCS

Quality Control

Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes

Clean and manage Sanger sequences from raw files to aligned consensus

Mapping

Label-free versus Labelled - How to Choose Your Quantitation Method

Introduction to proteomics, protein identification, quantification and statistical modelling

Clinical Metaproteomics 1: Database-Generation

Single Cell Proteomics data analysis with bioconductor-scp

metaQuantome 1: Data creation

metaQuantome 2: Function

Secretome Prediction

MaxQuant and MSstats for the analysis of TMT data

Peptide Library Data Analysis

Peptide and Protein Quantification via Stable Isotope Labelling (SIL)

Clinical Metaproteomics 3: Verification

Metaproteomics tutorial

Multiomics data analysis using MultiGSEA

Neoantigen 1b: Non-Reference-Database-Generation

Clinical Metaproteomics 5: Data Interpretation

Peptide and Protein ID using OpenMS tools

Peptide and Protein ID using SearchGUI and PeptideShaker

EncyclopeDIA

DIA Analysis using OpenSwathWorkflow

Annotating a protein list identified by LC-MS/MS experiments

Neoantigen 3: PepQuery2 Verification

MaxQuant and MSstats for the analysis of label-free data

Biomarker candidate identification

Neoantigen 4: Variant Annotation

Machine Learning Modeling of Anticancer Peptides

Label-free data analysis using MaxQuant

Protein FASTA Database Handling

Mass spectrometry imaging: Loading and exploring MSI data

Clinical Metaproteomics 4: Quantitation

Neoantigen 5a: Predicting HLA Binding

Proteogenomics 1: Database Creation

Detection and quantitation of N-termini (degradomics) via N-TAILS

Clinical Metaproteomics 2: Discovery

Neoantigen 2: Database merge and FragPipe discovery

Neoantigen 1a: Fusion-Database-Generation

metaQuantome 3: Taxonomy

Proteogenomics 3: Novel peptide analysis

Library Generation for DIA Analysis

Proteogenomics 2: Database Search

Neoantigen 5b: IEDB binding Validated Neopeptides

Statistical analysis of DIA data

Analysis of plant scRNA-Seq Data with Scanpy

NCBI BLAST+ against the MAdLand

Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants

Whole transcriptome analysis of Arabidopsis thaliana

Avian influenza viral strain analysis from gene segment sequencing data

M. tuberculosis Variant Analysis

Pox virus genome analysis from tiled-amplicon sequencing data

16S Microbial Analysis with mothur (extended)

16S Microbial Analysis with mothur (short)

QIIME 2 Moving Pictures

Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads

QIIME 2 Cancer Microbiome Intervention

Indexing and profiling microbes with MetaSBT

Clinical Metaproteomics 1: Database-Generation

Metatranscriptomics analysis using microbiome RNA-seq data

Metatranscriptomics analysis using microbiome RNA-seq data (short)

Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data

Identification of the micro-organisms in a beer using Nanopore sequencing

Clinical Metaproteomics 3: Verification

16S Microbial analysis with Nanopore data

Clinical Metaproteomics 5: Data Interpretation

Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2

Binning of metagenomic sequencing data

Building an amplicon sequence variant (ASV) table from 16S data using DADA2

Assembly of metagenomic sequencing data

Taxonomic Profiling and Visualization of Metagenomic Data

Calculating α and β diversity from microbiome taxonomic data

Clinical Metaproteomics 4: Quantitation

Clinical Metaproteomics 2: Discovery

Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition

MGnify v5.0 Amplicon Pipeline

Remove contamination and host reads

Antibiotic resistance detection

Analyses of metagenomics data - The global picture

Introduction to Microbiome Analysis

Mass spectrometry: LC-MS data processing

Mass spectrometry: GC-MS analysis with the metaMS package

Mass spectrometry: LC-MS preprocessing with XCMS

Introduction to Metabolomics

Mass spectrometry imaging: Finding differential analytes

Molecular formula assignment and mass recalibration with MFAssignR package

Predicting EI+ mass spectra with QCxMS

Mass spectrometry imaging: Examining the spatial distribution of analytes

Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms)

Mass spectrometry: LC-MS analysis

Finding the muon stopping site with pymuon-suite in Galaxy

Very Short Introductions: QC

Galaxy Basics for genomics

Galaxy Basics for everyone

A short introduction to Galaxy

Upload data to Galaxy

Best Practices for Citing Galaxy

IGV Introduction

Options for using Galaxy

Introduction to Galaxy

Introduction to Genomics and Galaxy

Data Manipulation Olympics

How to reproduce published Galaxy analyses

NGS data logistics

From peaks to genes

Analyse HeLa fluorescence siRNA screen

End-to-End Tissue Microarray Image Analysis with Galaxy-ME

Training Custom YOLO Models for Segmentation of Bioimages

Introduction to Image Analysis using Galaxy

Tracking of mitochondria and capturing mitoflashes

Voronoi segmentation

Nucleoli segmentation and feature extraction using CellProfiler

Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools

Object tracking using CellProfiler

Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines

Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy

Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy

Using BioImage.IO models for image analysis in Galaxy

Genomic Data Visualisation with JBrowse

Microbial Variant Calling

CRISPR screen analysis

Long non-coding RNAs (lncRNAs) annotation with FEELnc

Refining Genome Annotations with Apollo (eukaryotes)

Functional annotation of protein sequences

Genome annotation with Maker

Essential genes detection with Transposon insertion sequencing

Genome annotation with Maker (short)

Comparative gene analysis in unannotated genomes

Genome annotation with Funannotate

Bacterial pangenomics

Bacterial genome quality control

Dataset construction for bacterial comparative genomics

Creating an Official Gene Set

Genome Annotation

Introduction to Genome Annotation

Bacterial Genome Annotation

Genome annotation with Helixer

Genome annotation with Braker3

Refining Genome Annotations with Apollo (prokaryotes)

Secondary metabolite discovery

Masking repeats with RepeatMasker

Comparison of two annotation tools - Helixer and Braker3

Identification of AMR genes in an assembled bacterial genome

From small to large-scale genome comparison

Genome annotation with Prokka

Creating high resolution images of Galaxy Workflows

Understanding Galaxy history system

Name tags for following complex histories

Exporting to Onedata remote

Getting started with Onedata distributed storage

Onedata user-owned storage

JupyterLab in Galaxy

Annotate, prepare tests and publish Galaxy workflows in workflow registries

Searching Your History

Using dataset collections

Rule Based Uploader: Advanced

Downloading and Deleting Data in Galaxy

Use Jupyter notebooks in Galaxy

Extracting Workflows from Histories

Importing (uploading) data from Onedata

RStudio in Galaxy

Group tags for complex experimental designs

Rule Based Uploader

Galaxy workflows in Dockstore

Getting data into Galaxy

Using Workflow Parameters

InterMine integration with Galaxy

Creating, Editing and Importing Galaxy Workflows

Workflow Reports

FAIRification of an RNAseq dataset

Persistent Identifiers

REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data

Submitting workflows to LifeMonitor

Access

FAIR Bioimage Metadata

Best practices for workflows in GitHub repositories

Data Registration

FAIR Galaxy Training Material

Metadata

Exporting Workflow Run RO-Crates from Galaxy

RO-Crate in Python

FAIR data management solutions

DataPLANT ARCs

Making clinical datasets FAIR

FAIR and its Origins

Workflow Run RO-Crate Introduction

Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub

Sequence data submission to ENA

FAIR in a nutshell

RO-Crate - Introduction

Integrating InvenioRDM-compatible Repositories with Galaxy

Uploading Data to Zenodo from Galaxy

An earth-system RO-Crate

Data management in Medicinal Chemistry

Phylogenetics - Back to Basics - Phylogenetic Networks

Phylogenetics - Back to Basics - Estimating trees from alignments

Phylogenetics - Back to Basics - Building Trees

Phylogenetics - Back to Basics - Multiple Sequence Alignment

Phylogenetics - Back to Basics - Terminology

Phylogenetic analysis for bacterial comparative genomics

Phylogenetics - Back to Basics - Introduction

Tree thinking for tuberculosis evolution and epidemiology

Identifying tuberculosis transmission links: from SNPs to transmission clusters

Phylogenetics - Back to basics

Introduction to DNA Methylation data analysis

Introduction to ChIP-Seq data analysis

DNA Methylation data analysis

Infinium Human Methylation BeadChip

Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1)

Identification of the binding sites of the Estrogen receptor

Hi-C analysis of Drosophila melanogaster cells using HiCExplorer

ATAC-Seq data analysis

CUT&RUN data analysis

Formation of the Super-Structures on the Inactive X

Regulations/standards for AI using DOME

Optimizing DNA Sequences for Biological Functions using a DNA LLM

Generating Artificial Yeast DNA Sequences using a DNA LLM

Deep Learning (without Generative Artificial Intelligence) using Python

Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM

Neural networks using Python

Fine-tuning a LLM for DNA Sequence Classification

Assessment and feedback in training and teachings

Training techniques to enhance learner participation and engagement

Train-the-Trainer: putting it all together

Motivation and Demotivation

Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences

Foundational Aspects of Machine Learning using Python

QGIS Web Feature Services

Cleaning GBIF data using OpenRefine

Audio data annotation with NEAL (Nature + Energy Audio labeler)

Visualize EBV cube data with Panoply netCDF viewer

Data submission using ENA upload Tool

Biodiversity data exploration

Marine Omics identifying biosynthetic gene clusters

From NDVI data with OpenEO to time series visualisation with Holoviews

Cleaning GBIF data for the use in Ecology

Taxonomic Analysis of eDNA

Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS

RAD-Seq Reference-based data analysis

Checking expected species and contamination in bacterial isolate

Life Traits Ecoregionalization workflow

Ecoregionalization workflow tutorial

Preparing genomic data for phylogeny reconstruction

Obis marine indicators

Metabarcoding/eDNA through Obitools

Regional GAM

RAD-Seq de-novo data analysis

Visualization of Climate Data using NetCDF xarray Map Plotting

Species distribution modeling

Champs blocs indicators

RAD-Seq to construct genetic maps

Compute and analyze biodiversity metrics with PAMPA toolsuite

Sentinel 2 biodiversity

Phylodiversity analysis quick tutorial

Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities

OpenRefine Tutorial for researching cultural data

Text-Mining Differences in Chinese Newspaper Articles

Introduction to Digital Humanities in Galaxy

Setting up a dev Onedata instance

Writing Automated Tests for Galaxy

Contributing a New Feature to Galaxy Core

Adding and updating best practice metadata for Galaxy tools using the bio.tools registry

Debugging Galaxy

Creating Galaxy tools from Conda Through Deployment

Contributing to BioBlend as a developer

Galaxy Interactive Tools

Data source integration

ToolFactory: Generating Tools From More Complex Scripts

nb2workflow: Generating Galaxy Tools From Jupyter Notebooks

Galaxy Interactive Tours

Tool development and integration into Galaxy

Tool Dependencies and Conda

Galaxy Webhooks

ToolFactory: Generating Tools From Simple Scripts

Generic plugins

Prerequisites for building software/conda packages

Tool Dependencies and Containers

Tool Shed: sharing Galaxy tools

JavaScript plugins

Scripting Galaxy using the API and BioBlend

Galaxy Code Architecture

Galaxy Interactive Environments

Python - Multiprocessing

Python - Coding Style

Python - Subprocess

Python - Globbing

Python - Testing

Python - Type annotations

Virtual Environments For Software Development

Python - Argparse

Conda Environments For Software Development

Python - Introductory Graduation

Python - Try & Except

Python - Files & CSV

Versioning your code and data with git

Data manipulation with Pandas

Python - Loops

Python - Flow Control

Introduction to sequencing with Python (part four)

Python - Lists & Strings & Dictionaries

Introduction to sequencing with Python (part three)

Data Manipulation Olympics - JQ

Data Manipulation Olympics - SQL

Plotting in Python

dplyr & tidyverse for data processing

Introduction to sequencing with Python (part two)

Python - Basic Types & Type Conversion

Advanced Python

Introduction to sequencing with Python (part one)

Python - Functions

Advanced R in Galaxy

Data visualisation Olympics - Visualization in R

SQL with R

Advanced SQL

R basics in Galaxy

Basics of using Git from the Command Line

CLI Educational Game - Bashcrawl

Make & Snakemake

Python - Math

One protein along the UniProt page

CLI basics

Introduction to Python

Introduction to SQL

Advanced CLI in Galaxy

Variant Calling Workflow

SQL Educational Game - Murder Mystery

SQL with Python

Python - Warm-up for statistics and machine learning

Version Control with Git

Learning about one gene across biological resources and formats

A (very) brief history of genomics

Data Manipulation Olympics

SARS-CoV-2 Viral Sample Alignment and Variant Visualization

SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis

Removal of human reads from SARS-CoV-2 sequencing data

From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis

Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data

Submitting sequence data to ENA

Automating Galaxy workflows using the command line

Updating tool versions in a tutorial

Creating Slides

Creating content in Markdown

Single Cell Publication - Data Plotting

Single Cell Publication - Data Analysis

FAIR Galaxy Training Material

Creating a new tutorial

Adding Quizzes to your Tutorial

FAIR-by-Design methodology

Design and plan session, course, materials

Including a new topic

Tools, Data, and Workflows for tutorials

Updating diffs in admin training

GTN Metadata

Creating Interactive Galaxy Tours

Preview the GTN website as you edit your training material

Generating PDF artefacts of the website

Contributing with GitHub via its interface

Adding auto-generated video to your slides

Teaching Python

Principles of learning and how they apply to training and teaching

Overview of the Galaxy Training Material

Contributing to the Galaxy Training Network with GitHub

Setting up molecular systems

Running molecular dynamics simulations using NAMD

High Throughput Molecular Dynamics and Analysis

Running molecular dynamics simulations using GROMACS

Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring

Analysis of molecular dynamics simulations

Protein-ligand docking

Data management in Medicinal Chemistry

Protein target prediction of a bioactive ligand with Align-it and ePharmaLib

Creating a Special Interest Group

What's a Special Interest Group?

Creation of a Galaxy tutorial table for your community

Creation of resources listing all the tools and their metadata relevant to your community

Make your tools available on your subdomain

Creation of resources listing Galaxy workflow for your community

Creating community content

Creation of the labs in the different Galaxy instances for your community

Visualize Climate data with Panoply netCDF viewer

Collaboration with JupyterGIS

Getting your hands-on earth data

Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab

Ocean Data View (ODV)

Introduction to climate data

Getting your hands-on climate data

Functionally Assembled Terrestrial Ecosystem Simulator (FATES)

Nitrate DMQC for autonomous platforms such as Argo floats

Ocean's variables study

Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools

Analyse Argo data

Pangeo Notebook in Galaxy - Introduction to Xarray

Sentinel 5P data visualisation

An introduction to get started in genome assembly and annotation

Deeper look into Genome Assembly algorithms

Genome assembly and assembly QC - Introduction short version

Making sense of a newly assembled genome

Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data

Genome assembly using PacBio data

Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step

Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads

Unicycler Assembly

De Bruijn Graph Assembly

Assembly of metagenomic sequencing data

Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data

Decontamination of a genome assembly

Assembly of the mitochondrial genome from PacBio HiFi reads

Chloroplast genome assembly

ERGA post-assembly QC

Hybrid genome assembly - Nanopore and Illumina

Large genome assembly and polishing

Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)

Genome Assembly Quality Control

An Introduction to Genome Assembly

BioImage Model Zoo: Advanced models in one-click

Welcome to the BioImage Model Zoo

Contribute to the BioImage.IO models

Deploying a compute cluster in OpenStack via Terraform

Deploying Tailscale/Headscale for private mesh networking

Deploying Wireguard for private mesh networking

Pulsar usage on SURF Research Cloud

Galaxy usage on SURF Research Cloud

Managing Galaxy on Kubernetes

Galaxy Installation on Kubernetes

Reference Data with CVMFS without Ansible

Automation with Jenkins

Adding file-sources to Galaxy

Galaxy Database schema

Use Apptainer containers for running Galaxy jobs

Alternative Celery Deployment for Galaxy

Customizing the look of Galaxy

Customizing the look of Galaxy (Manual)

Mapping Jobs to Destinations using TPV

Training Infrastructure as a Service (TIaaS)

How I learned to stop worrying and love the systemd

Galaxy Monitoring with Reports

Monitoring Galaxy and Pulsar with Sentry

Performant Uploads with TUS

Create a subdomain for your community on UseGalaxy.eu

Upgrading Galaxy

Enable upload via FTP

Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD)

Deploying a Beacon v1 in Galaxy

Empathy

Setting up Celery Workers for Galaxy

Advanced customisation of a Galaxy instance

Reference Data with Data Managers

Server: Other

Galaxy Administrator Time Burden and Technology Usage

Galaxy Monitoring

Controlling Galaxy with systemd or Supervisor

Galactic Database

External Authentication

Galaxy Troubleshooting

Galaxy from an administrator's point of view

uWSGI

Docker and Galaxy

Ansible

Running Jobs on Remote Resources with Pulsar

Server Maintenance: Cleanup, Backup, and Restoration

Data Libraries

Gearing towards production

Galaxy Interactive Tools

Distributed Object Storage

User, Role, Group, Quota, and Authentication managment

Galaxy Monitoring with Telegraf and Grafana

Reference Data with CVMFS

Galaxy Monitoring with gxadmin

Connecting Galaxy to a compute cluster

Galaxy Installation with Ansible

Galaxy Tool Management with Ephemeris

Galaxy on the Cloud