summarize-paper

Extract methods, tools, sample data, and references from a paper.

Mold health

warn

Source layout
Directory Mold with only index.md frontmatter.
Axis fields
source-specific fields are coherent.
Eval plan
eval.md not written yet.
Typed refs
No typed references yet.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

axis: source-specific
source: paper
name: summarize-paper

Artifact handoffs

/ pipeline contract

Produces

freeform-summary markdown freeform-summary.md

Methods, tools, sample data, references, and workflow intent extracted from a primary paper, normalized into the shared free-form source summary handoff.
consumed by

summarize-paper

Stub. Replace with real Mold content per MOLD_SPEC once first walks are done.

Emit the same freeform-summary artifact shape used by interview-derived sources so downstream freeform-summary Molds can operate on paper and interview starts without splitting the design/template tier.

Incoming References (3)

PAPER → CWLphase of pipeline— Direct path from a paper to a CWL Workflow + CommandLineTool set.
PAPER → GALAXYphase of pipeline— Direct path from a paper to a Galaxy gxformat2 workflow. No CWL intermediate.
Alignment: gxy-sketches ↔ Galaxy Workflow Foundryrelated mold— Where the Foundry's per-source summary Molds align with gxy-sketches on field names and source/test-fixture vocabulary, and where they intentionally do not.