Hierarchy For All Packages

Package Hierarchies:

• org.galaxyproject.dockstore_galaxy_interface.language,
• org.galaxyproject.gxformat2,
• org.galaxyproject.gxformat2.v19_09,
• org.galaxyproject.gxformat2.v19_09.utils

Class Hierarchy

• java.lang.Object
  • org.galaxyproject.gxformat2.v19_09.utils.AnyLoader (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.ArrayLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.ConstantMaps
  • org.galaxyproject.gxformat2.Cytoscape
  • org.galaxyproject.gxformat2.CytoscapeDAG
  • org.galaxyproject.gxformat2.CytoscapeDAG.Edge
  • org.galaxyproject.gxformat2.CytoscapeDAG.Edge.EdgeData
  • org.galaxyproject.gxformat2.CytoscapeDAG.Node
  • org.galaxyproject.gxformat2.CytoscapeDAG.Node.NodeData
  • org.galaxyproject.gxformat2.v19_09.utils.DefaultFetcher (implements org.galaxyproject.gxformat2.v19_09.utils.Fetcher)
  • org.galaxyproject.gxformat2.v19_09.utils.EnumLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.Format2Linter (implements org.galaxyproject.gxformat2.GalaxyWorkflowLinter)
  • org.galaxyproject.gxformat2.Format2WorkflowAdapter (implements org.galaxyproject.gxformat2.WorkflowAdapter)
  • org.galaxyproject.dockstore_galaxy_interface.language.GalaxyWorkflowPlugin.GalaxyWorkflowPluginImpl (implements io.dockstore.language.CompleteLanguageInterface)
  • org.galaxyproject.gxformat2.v19_09.utils.IdMapLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.IoUtils
  • org.galaxyproject.gxformat2.Lint
  • org.galaxyproject.gxformat2.LintContext
  • org.galaxyproject.gxformat2.v19_09.utils.LoaderInstances
  • org.galaxyproject.gxformat2.v19_09.utils.LoadingOptions
  • org.galaxyproject.gxformat2.v19_09.utils.LoadingOptionsBuilder
  • org.galaxyproject.gxformat2.NativeLinter (implements org.galaxyproject.gxformat2.GalaxyWorkflowLinter)
  • org.galaxyproject.gxformat2.NativeWorkflowAdapter (implements org.galaxyproject.gxformat2.WorkflowAdapter)
  • org.galaxyproject.gxformat2.v19_09.utils.NullLoader (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.OneOrListOf<T>
  • org.galaxyproject.gxformat2.v19_09.utils.OneOrListOfLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.OptionalLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.pf4j.Plugin
    • org.galaxyproject.dockstore_galaxy_interface.language.GalaxyWorkflowPlugin
  • org.galaxyproject.gxformat2.v19_09.utils.PrimitiveLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.RecordLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.RootLoader
  • org.galaxyproject.gxformat2.v19_09.utils.SavableImpl (implements org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.ArraySchemaImpl (implements org.galaxyproject.gxformat2.v19_09.ArraySchema)
    • org.galaxyproject.gxformat2.v19_09.EnumSchemaImpl (implements org.galaxyproject.gxformat2.v19_09.EnumSchema)
    • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflowImpl (implements org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow)
    • org.galaxyproject.gxformat2.v19_09.RecordFieldImpl (implements org.galaxyproject.gxformat2.v19_09.RecordField)
    • org.galaxyproject.gxformat2.v19_09.RecordSchemaImpl (implements org.galaxyproject.gxformat2.v19_09.RecordSchema)
    • org.galaxyproject.gxformat2.v19_09.ReportImpl (implements org.galaxyproject.gxformat2.v19_09.Report)
    • org.galaxyproject.gxformat2.v19_09.StepPositionImpl (implements org.galaxyproject.gxformat2.v19_09.StepPosition)
    • org.galaxyproject.gxformat2.v19_09.ToolShedRepositoryImpl (implements org.galaxyproject.gxformat2.v19_09.ToolShedRepository)
    • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameterImpl (implements org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter)
    • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameterImpl (implements org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepImpl (implements org.galaxyproject.gxformat2.v19_09.WorkflowStep)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepInputImpl (implements org.galaxyproject.gxformat2.v19_09.WorkflowStepInput)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepOutputImpl (implements org.galaxyproject.gxformat2.v19_09.WorkflowStepOutput)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • java.lang.RuntimeException
        • org.galaxyproject.gxformat2.v19_09.utils.ValidationException
  • org.galaxyproject.gxformat2.v19_09.utils.TypeDslLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.UnionLoader (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.UriLoader<T> (implements org.galaxyproject.gxformat2.v19_09.utils.Loader<T>)
  • org.galaxyproject.gxformat2.v19_09.utils.Uris
  • org.galaxyproject.gxformat2.v19_09.utils.Uris.UriSplit
  • org.galaxyproject.gxformat2.v19_09.utils.Validator
  • org.galaxyproject.gxformat2.WorkflowAdapter.Input
  • org.galaxyproject.gxformat2.WorkflowAdapter.NormalizedStep
  • org.galaxyproject.gxformat2.v19_09.utils.YamlUtils

Interface Hierarchy

• org.galaxyproject.gxformat2.v19_09.utils.Fetcher
• org.galaxyproject.gxformat2.GalaxyWorkflowLinter
• org.galaxyproject.gxformat2.v19_09.utils.Loader<T>
• org.galaxyproject.gxformat2.v19_09.utils.Savable
  • org.galaxyproject.gxformat2.v19_09.ArraySchema
  • org.galaxyproject.gxformat2.v19_09.Documented
    • org.galaxyproject.gxformat2.v19_09.Parameter (also extends org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.InputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
        • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.OutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
        • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.Process (also extends org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.RecordField (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.EnumSchema
  • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Process)
  • org.galaxyproject.gxformat2.v19_09.HasStepErrors
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.HasStepPosition
    • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.InputParameter, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.HasUUID
    • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.Process, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.Identified
    • org.galaxyproject.gxformat2.v19_09.Parameter (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.InputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
        • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.OutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
        • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.Process (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepInput (also extends org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.utils.Savable, org.galaxyproject.gxformat2.v19_09.Sink)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepOutput (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.InputParameter (also extends org.galaxyproject.gxformat2.v19_09.Parameter)
    • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.Labeled
    • org.galaxyproject.gxformat2.v19_09.Process (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.ReferencesTool, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepInput (also extends org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.utils.Savable, org.galaxyproject.gxformat2.v19_09.Sink)
  • org.galaxyproject.gxformat2.v19_09.OutputParameter (also extends org.galaxyproject.gxformat2.v19_09.Parameter)
    • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.Parameter (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.Identified)
    • org.galaxyproject.gxformat2.v19_09.InputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.utils.Savable)
    • org.galaxyproject.gxformat2.v19_09.OutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
      • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter (also extends org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.Process (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled)
    • org.galaxyproject.gxformat2.v19_09.GalaxyWorkflow (also extends org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.RecordField (also extends org.galaxyproject.gxformat2.v19_09.Documented)
  • org.galaxyproject.gxformat2.v19_09.RecordSchema
  • org.galaxyproject.gxformat2.v19_09.ReferencesTool
    • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.Report
  • org.galaxyproject.gxformat2.v19_09.Sink
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepInput (also extends org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.utils.Savable)
  • org.galaxyproject.gxformat2.v19_09.StepPosition
  • org.galaxyproject.gxformat2.v19_09.ToolShedRepository
  • org.galaxyproject.gxformat2.v19_09.WorkflowInputParameter (also extends org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.InputParameter)
  • org.galaxyproject.gxformat2.v19_09.WorkflowOutputParameter (also extends org.galaxyproject.gxformat2.v19_09.OutputParameter)
  • org.galaxyproject.gxformat2.v19_09.WorkflowStep (also extends org.galaxyproject.gxformat2.v19_09.Documented, org.galaxyproject.gxformat2.v19_09.HasStepErrors, org.galaxyproject.gxformat2.v19_09.HasStepPosition, org.galaxyproject.gxformat2.v19_09.HasUUID, org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.ReferencesTool)
  • org.galaxyproject.gxformat2.v19_09.WorkflowStepInput (also extends org.galaxyproject.gxformat2.v19_09.Identified, org.galaxyproject.gxformat2.v19_09.Labeled, org.galaxyproject.gxformat2.v19_09.Sink)
  • org.galaxyproject.gxformat2.v19_09.WorkflowStepOutput (also extends org.galaxyproject.gxformat2.v19_09.Identified)
• org.galaxyproject.gxformat2.WorkflowAdapter

Enum Class Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.lang.constant.Constable, java.io.Serializable)
    • org.galaxyproject.gxformat2.v19_09.Any
    • org.galaxyproject.gxformat2.v19_09.enum_d062602be0b4b8fd33e69e29a841317b6ab665bc
    • org.galaxyproject.gxformat2.v19_09.enum_d961d79c225752b9fadb617367615ab176b47d77
    • org.galaxyproject.gxformat2.v19_09.enum_d9cba076fca539106791a4f46d198c7fcfbdb779
    • org.galaxyproject.gxformat2.v19_09.GalaxyType
    • org.galaxyproject.gxformat2.v19_09.PrimitiveType
    • org.galaxyproject.gxformat2.v19_09.WorkflowStepType