Package org.galaxyproject.gxformat2

Class Cytoscape

java.lang.Object

org.galaxyproject.gxformat2.Cytoscape

public class Cytoscape
extends Object

General notes: There's no guarantee that a normalized step has a label, step definition ID or state

Field Summary

Fields

Modifier and Type	Field	Description
static final String	END_ID
static final String	MAIN_TS_PREFIX
static final com.fasterxml.jackson.databind.ObjectMapper	objectMapper
static final String	START_ID

Constructor Summary

Constructors

Constructor	Description
Cytoscape()

Method Summary

Modifier and Type	Method	Description
static Map<String,Object>	getElements(String path)
static Map<String,Object>	getElements(Map<String,Object> object)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

objectMapper

public static final com.fasterxml.jackson.databind.ObjectMapper objectMapper

MAIN_TS_PREFIX

public static final String MAIN_TS_PREFIX

See Also:

• Constant Field Values

START_ID

public static final String START_ID

See Also:

• Constant Field Values

END_ID

public static final String END_ID

See Also:

• Constant Field Values

Constructor Details

Cytoscape

public Cytoscape()

Method Details

getElements

public static Map<String,Object> getElements(String path)
                                      throws Exception

Throws:

Exception

getElements

public static Map<String,Object> getElements(Map<String,Object> object)