Training material for proteomics workflows in Galaxy
Before diving into this topic, we recommend you to have a look at:
This material is maintained by:
- Florian Christoph Sigloch (firstname.lastname@example.org)
- Björn Grüning (email@example.com)
- Clemens Blank (firstname.lastname@example.org)
For any question related to this topic and the content, you can contact them.
- Kumar D, Yadav AK and Dash D: Choosing an Optimal Database for Protein Identification from Tandem Mass Spectrometry Data.
Vaudel M et al.: Shedding light on black boxes in protein identification.
An extensive tutorial for peptide and protein identification, available at http://compomics.com/bioinformatics-for-proteomics. The material is completely based on freely available and open-source tools.
Tholen S et al.: Limited and Degradative Proteolysis in the Context of Posttranslational Regulatory Networks: Current Technical and Conceptional Advances
Review on LC-MS/MS based proteomic methods to identify neo-N-termini, e.g. generated by protease cleavage.