Introduction to Galaxy Analyses
Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
Your First Analysis
These are the core, foundational topics for learning how to use Galaxy.
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A short introduction to Galaxy | |||||
From peaks to genes
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Galaxy 101
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Galaxy 101 for everyone
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Introduction to Galaxy
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Introduction to Genomics and Galaxy
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Go a bit further
Explore the Galaxy a bit further after you've finished the basics.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Data Manipulation Olympics | |||||
How to reproduce published Galaxy analyses
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NGS data logistics
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Options for using Galaxy
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Other
Assorted Tutorials
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
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Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
You can also use the following Docker image for these tutorials:
docker run -p 8080:80 quay.io/galaxy/introduction-training
NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.
It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.
Frequently Asked Questions
Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.
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Editorial Board
This material is reviewed by our Editorial Board:
Jennifer Hillman-Jackson Dave ClementsFor any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Christopher Barnett Daniel Blankenberg Andrea Bagnacani Nadia Goué Anton Nekrutenko Joachim Wolff Nicola Soranzo Melanie Föll Alaa Elghamry Marius van den Beek Anna Syme Björn Grüning Anthony Bretaudeau Helena Rasche Bérénice Batut Dilmurat Yusuf Anne Pajon Cristóbal Gallardo Saskia Hiltemann Anne Fouilloux Clemens Blank Michele Maroni Sarah Peter Dave Clements Olha NahornaFunders
This material was funded by:
Gallantries