Jekyll 2026-04-29T09:43:42+00:00 https://training.galaxyproject.org/training-material/topics/visualisation/feed.xml Visualisation Recently added tutorials, slides, FAQs, and events in the visualisation topic https://training.galaxyproject.org/training-material/assets/images/GTN-60px.png 📚 Genomic Data Visualisation with JBrowse2 https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/jbrowse2/tutorial.html 2026-04-29T09:43:42+00:00 Romane LIBOUBAN https://training.galaxyproject.org/training-material/hall-of-fame/rlibouba/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 🛠️ Visualise amount of objects in Museum Collection https://training.galaxyproject.org/training-material/topics/digital-humanities/tutorials/open-refine-tutorial/workflows/Visualise-amount-of-objects-in-Museum-Collection.html 2025-09-24T13:32:07+00:00 Text mining a museum collection in tabular format to extract from which year most objects derive and what they are. Daniela Schneider https://training.galaxyproject.org/training-material/hall-of-fame/Sch-Da/ 🖼️ Friends Don't Let Friends Make Bad Graphs https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/bad-graphs/slides.html 2023-11-20T11:37:02+00:00 Friends Don’t Let Friends Make Bad Graphs Chenxin Li https://training.galaxyproject.org/training-material/hall-of-fame/cxli233/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 🛠️ Circos for E. Coli https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos-microbial/workflows/main_workflow.html 2023-11-08T09:46:18+00:00 This workflow will create a simple plot of a microbial sized genome (e.g. E. coli) using a couple of datasets like sequencing depth (bigwigs), gff3 formatted annotations, and some variants. Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ 📚 Ploting a Microbial Genome with Circos https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos-microbial/tutorial.html 2023-11-08T09:46:18+00:00 Once you’re comfortable with Circos in Galaxy, you might want to explore some real world use cases with Circos such as making a simple Genome Annotation plot, like one might want to publish alongside their genome annotation publication Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 📰 New Tutorial: Visualization of RNA-Seq results with Volcano Plot in R https://training.galaxyproject.org/training-material/news/2021/06/26/tutorial-volcanoplot-r.html 2021-06-26T00:00:00+00:00 The Volcano plot tutorial introduced volcano plots and showed how they can be easily generated with the Galaxy Volcano plot tool. This new tutorial shows how you can customise a plot using the R script output from the tool and RStudio in Galaxy. A short video for the tutorial is also available on YouTube, created for the GCC2021 Training week. Maria Doyle https://training.galaxyproject.org/training-material/hall-of-fame/mblue9/ 🛠️ Simtext training workflow https://training.galaxyproject.org/training-material/topics/statistics/tutorials/text-mining_simtext/workflows/main_workflow.html 2021-04-05T18:58:54+00:00 In this workflow the similarity among set of search queries (e.g. genes) is analyzed based on the associated vocabulary in PubMed. The last tool is an interactive tool that enables the inspection of the data. https://training.galaxyproject.org/training-material/hall-of-fame// ❓ Add Mapped reads track to IGV from Galaxy https://training.galaxyproject.org/training-material/topics/visualisation/faqs/visualizations_igv_view_mapping.html 2021-03-24T13:50:23+00:00 Delphine Lariviere https://training.galaxyproject.org/training-material/hall-of-fame/delphine-l/ Bérénice Batut https://training.galaxyproject.org/training-material/hall-of-fame/bebatut/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ ❓ Add genome and annotations to IGV from Galaxy https://training.galaxyproject.org/training-material/topics/visualisation/faqs/visualizations_igv_add_genome.html 2021-03-24T13:50:23+00:00 Delphine Lariviere https://training.galaxyproject.org/training-material/hall-of-fame/delphine-l/ Bérénice Batut https://training.galaxyproject.org/training-material/hall-of-fame/bebatut/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 🎥 Recording of Circos https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/recordings/#tutorial-recording-15-february-2021 2021-02-15T00:00:00+00:00 A 6M long recording is now available. Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ 🎥 Recording of Visualisation with Circos https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/recordings/#tutorial-recording-15-february-2021 2021-02-15T00:00:00+00:00 A 50M long recording is now available. Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ 🛠️ Circos: Nature workflow https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/workflows/nature_workflow.html 2021-02-03T17:18:32+00:00 Visualisation with Circos Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 🛠️ Circos tutorial https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/workflows/main_workflow.html 2020-01-10T12:21:13+00:00 Visualisation with Circos Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 🖼️ Visualisations in Galaxy https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/introduction/slides.html 2020-01-10T12:21:13+00:00 What is Data Visualisation Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Bérénice Batut https://training.galaxyproject.org/training-material/hall-of-fame/bebatut/ Anthony Bretaudeau https://training.galaxyproject.org/training-material/hall-of-fame/abretaud/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Cristóbal Gallardo https://training.galaxyproject.org/training-material/hall-of-fame/gallardoalba/ 🖼️ JBrowse https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/jbrowse/slides.html 2020-01-10T12:21:13+00:00 JBrowse for Genomics Visualisation Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ Anthony Bretaudeau https://training.galaxyproject.org/training-material/hall-of-fame/abretaud/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ 📚 Genomic Data Visualisation with JBrowse https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/jbrowse/tutorial.html 2020-01-10T12:21:13+00:00 Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ Anthony Bretaudeau https://training.galaxyproject.org/training-material/hall-of-fame/abretaud/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Bérénice Batut https://training.galaxyproject.org/training-material/hall-of-fame/bebatut/ Stéphanie Robin https://training.galaxyproject.org/training-material/hall-of-fame/stephanierobin/ Simon Bray https://training.galaxyproject.org/training-material/hall-of-fame/simonbray/ 🖼️ Circos https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/slides.html 2020-01-10T12:21:13+00:00 Circos for Genomics Visualisation Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Anthony Bretaudeau https://training.galaxyproject.org/training-material/hall-of-fame/abretaud/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ 📚 Visualisation with Circos https://training.galaxyproject.org/training-material/topics/visualisation/tutorials/circos/tutorial.html 2020-01-10T12:21:13+00:00 Circos (Krzywinski et al. 2009) is a software package for visualizing data in a circular layout. This makes Circos ideal for exploring relationships between objects or positions. Circos plots have appeared in thousands of scientific publications. Although originally designed for visualizing genomic data, it can create figures from data in any field. In this tutorial we discuss the Galactic Circos (Rasche and Hiltemann 2020) tool which enables you to access Circos via the convenient Galaxy interface, and even produce plots as part of your workflows! Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Cristóbal Gallardo https://training.galaxyproject.org/training-material/hall-of-fame/gallardoalba/ Helena Rasche https://training.galaxyproject.org/training-material/hall-of-fame/hexylena/ Björn Grüning https://training.galaxyproject.org/training-material/hall-of-fame/bgruening/ Saskia Hiltemann https://training.galaxyproject.org/training-material/hall-of-fame/shiltemann/ Anthony Bretaudeau https://training.galaxyproject.org/training-material/hall-of-fame/abretaud/ Cristóbal Gallardo https://training.galaxyproject.org/training-material/hall-of-fame/gallardoalba/ Nate Coraor https://training.galaxyproject.org/training-material/hall-of-fame/natefoo/