Development in Galaxy

Galaxy is an open-source project. Everyone can contribute to its development with core Galaxy development, integration of softwares in Galaxy environment, …

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Material

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Core

These are the core, foundational topics for Galaxy development.

Lesson Slides Hands-on Recordings
Contributing a New Feature to Galaxy Core
Debugging Galaxy
Galaxy Code Architecture
Writing Automated Tests for Galaxy

API

Interacting with the Galaxy API

Lesson Slides Hands-on Recordings
Contributing to BioBlend as a developer
Scripting Galaxy using the API and BioBlend

Dependencies

These topics include information on how dependencies work in Galaxy and how to construct them.

Lesson Slides Hands-on Recordings
Prerequisites for building software/conda packages
Tool Dependencies and Conda
Tool Dependencies and Containers

Tool Development

Here you can learn everything about tool development in the Galaxy Ecosystem

Lesson Slides Hands-on Recordings
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry
Creating Galaxy tools from Conda Through Deployment
Galaxy Interactive Tools
Tool Shed: sharing Galaxy tools
Tool development and integration into Galaxy
ToolFactory: Generating Tools From More Complex Scripts
ToolFactory: Generating Tools From Simple Scripts

Viz

Visualizations in Galaxy give you the ability to implement Javascript apps into Galaxy to analyse and visualise data.

Lesson Slides Hands-on Recordings
Generic plugins
JavaScript plugins

Advanced Features

These are more advanced features of Galaxy which you might want to develop for as they greatly expand the abilities of Galaxy.

Lesson Slides Hands-on Recordings
Data source integration
Galaxy Interactive Tours
Galaxy Webhooks

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

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Editorial Board

This material is reviewed by our Editorial Board:

Gildas Le Corguillé avatar Gildas Le Corguilléorcid logoBérénice Batut avatar Bérénice Batutorcid logoHelena Rasche avatar Helena Rasche

Contributors

This material was contributed to by:

orcid logoClemens Blank avatar Clemens Blankorcid logoGianmauro Cuccuru avatar Gianmauro CuccuruYouri Hoogstrate avatar Youri HoogstrateLain Pavot avatar Lain Pavotorcid logoAlex Ostrovsky avatar Alex OstrovskyStéphanie Legras avatar Stéphanie Legrasorcid logoNicola Soranzo avatar Nicola SoranzoEstelle Ancelet avatar Estelle Anceletorcid logoNate Coraor avatar Nate Coraororcid logoYvan Le Bras avatar Yvan Le Brasorcid logoBjörn Grüning avatar Björn GrüningDannon Baker avatar Dannon Bakerorcid logoMartin Čech avatar Martin Čechorcid logoJohn Chilton avatar John Chiltonorcid logoCameron Hyde avatar Cameron HydeDave B. avatar Dave B.Gildas Le Corguillé avatar Gildas Le CorguilléSimon Bray avatar Simon BrayAssunta DeSanto avatar Assunta DeSantoorcid logoWendi Bacon avatar Wendi BaconMarie Josse avatar Marie JosseNitesh Turaga avatar Nitesh TuragaCyril Monjeaud avatar Cyril Monjeaudorcid logoPaul Zierep avatar Paul Ziereporcid logoJohan Gustafsson avatar Johan Gustafssonorcid logoJohn Davis avatar John DavisRoss Lazarus avatar Ross Lazarusorcid logoSaskia Hiltemann avatar Saskia HiltemannErik Schill avatar Erik Schillorcid logoHelena Rasche avatar Helena RascheMatthias Bernt avatar Matthias BerntClare Sloggett avatar Clare Sloggettorcid logoAnthony Bretaudeau avatar Anthony Bretaudeauorcid logoBérénice Batut avatar Bérénice BatutLoraine Guéguen avatar Loraine GuéguenHervé Ménager avatar Hervé MénagerAysam Guerler avatar Aysam Guerler

Funding

These individuals or organisations provided funding support for the development of this resource