Single Cell

Lesson Slides Hands-on Recordings Input dataset Workflows
Hands-on: Hands-on: Generating a single cell matrix using Alevin and combining datasets (bash + R)
10x paper-replication jupyter-notebook
Hands-on: Hands-on: Hands-on: Hands-on: Generating a single cell matrix using Alevin
10x paper-replication
Hands-on: Hands-on: Pre-processing of 10X Single-Cell ATAC-seq Datasets
10x epigenetics
Hands-on: Hands-on: Pre-processing of 10X Single-Cell RNA Datasets
10x
Hands-on: Hands-on: Clustering 3K PBMCs with Scanpy
10x
Hands-on: Hands-on: Filter, plot and explore single-cell RNA-seq data (Scanpy, Python)
10x paper-replication Python jupyter-notebook
Hands-on: Hands-on: Filter, plot, and explore single cell RNA-seq data (Seurat, R)
10x paper-replication R rmarkdown-notebook jupyter-notebook
Hands-on: Hands-on: Hands-on: Hands-on: Combining single cell datasets after pre-processing
10x paper-replication
Hands-on: Hands-on: Removing the effects of the cell cycle
10x
Hands-on: Hands-on: Filter, plot, and explore single cell RNA-seq data (Seurat)
10x paper-replication
Hands-on: Hands-on: Hands-on: Hands-on: Filter, plot and explore single-cell RNA-seq data (Scanpy)
10x paper-replication
Hands-on: Hands-on: Inferring single cell trajectories (Scanpy, Python)
10x paper-replication Python jupyter-notebook
Hands-on: Hands-on: Inferring single cell trajectories (Monocle3, R)
10x paper-replication R rmarkdown-notebook jupyter-notebook
Hands-on: Hands-on: Inferring single cell trajectories (Scanpy)
10x
Hands-on: Hands-on: Inferring single cell trajectories (Monocle3)
10x paper-replication R