Generic variation analysis on WGS PE data
Workflow for variant analysis against a reference genome in GenBank format
- Author(s):
- Release: 0.1.1
- License: MIT
- UniqueID: be0d055d-25ac-422a-ae9c-b0efdfb5bf86
Generic variation analysis on WGS PE data
This workflows performs paired end read mapping with bwa-mem followed by sensitive variant calling across a wide range of AFs with lofreq and variant annotation with snpEff. The reference genome can be provided as a GenBank file.