Expand	Topic	Title	Link	EDAM topic	EDAM operation	Creation	Last modification	Version	Tutorial	Slides	Video	Workflows	Tools	Servers with precise tool versions	Servers with tool but different versions	Feedback number	Feedback mean note	Visitors	Page views	Visit duration	Video views
	Assembly	Unicycler Assembly	https://training.galaxyproject.org//topics/assembly/tutorials/unicycler-assembly/tutorial.html	Sequence assembly, Genomics, Microbiology	Statistical calculation, Genome assembly, Coding region prediction, Sequencing quality control, Genome annotation, Gene prediction, Aggregation, Sequence composition calculation, Validation, Visualisation, Sequence assembly validation	2017-10-11	2025-05-15	24	True	True	False	True	unicycler, multiqc, fastqc, prokka, quast	UseGalaxy.eu, UseGalaxy.org (Main), UseGalaxy.org.au	Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no	0		2857850	7551800	4.516667	0
	Assembly	Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data	https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-illumina/tutorial.html	Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology	Statistical calculation, Genome assembly, Sequence assembly visualisation, Sequencing quality control, Sequence composition calculation, Read mapping, Visualisation, Sequence contamination filtering, Sequence assembly validation	2021-03-24	2025-03-20	16	True	False	True	True	shovill, upload1, fastqc, falco, bandage_info, fastp, bandage_image, quast	UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main)		0		9861	15245	3.633333	0
	Assembly	Making sense of a newly assembled genome	https://training.galaxyproject.org//topics/assembly/tutorials/ecoli_comparison/tutorial.html	Sequence assembly, Genomics, Microbiology	Sequence alignment, Mapping, Sequence visualisation, Read mapping, Genome visualisation	2018-06-14	2024-06-24	29	True	False	False	True	random_lines1, tp_sed_tool, tp_replace_in_line, circos_interval_to_tiles, collapse_dataset, bedtools_sortbed, tp_cat, circos, join1, tp_replace_in_column, bedtools_complementbed, circos_aln_to_links, tp_sort_header_tool, fasta_filter_by_length, lastz_wrapper_2, Grep1, mergeCols1, tp_grep_tool, datamash_ops, bedtools_intersectbed, jbrowse, upload1, addValue, Filter1, cat1, Cut1, fasta_compute_length			0		6714	12964	2.933333	0
	Assembly	Assembly of metagenomic sequencing data	https://training.galaxyproject.org//topics/assembly/tutorials/metagenomics-assembly/tutorial.html	Metagenomics, Sequence assembly	Genome assembly, Sequence assembly visualisation, Data handling, Variant calling, Local alignment, Formatting, Read mapping, Visualisation, Sequence file editing, Read pre-processing, Statistical calculation, Sequence alignment analysis, Sequence trimming, Primer removal, Sequencing quality control, Sequence composition calculation, Sequence contamination filtering, Sequence assembly validation	2025-10-19	2025-10-19	0	True	False	True	True	coverm_contig, filter_tabular, random_lines1, cutadapt, fastqc, megahit_contig2fastg, ngsutils_bam_filter, megahit, bg_uniq, bandage_info, collection_column_join, seqtk_subseq, bandage_image, metaspades, bowtie2, quast, bamtools, tp_cat		UseGalaxy.cz, UseGalaxy.eu	0		1	2	0.000000	0
	Assembly	Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data)	https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-nanopore/tutorial.html	Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Antimicrobial resistance	Statistical calculation, Sequence assembly validation, Genome assembly, Sequence assembly visualisation, Box-Whisker plot plotting, Sequencing error detection, Filtering, Sequencing quality control, Cross-assembly, Sequence alignment, Scatter plot plotting, Sequence composition calculation, Read mapping, Visualisation, De-novo assembly, Sequence contamination filtering, Mapping assembly	2021-03-24	2024-11-29	15	True	False	False	True	CONVERTER_bz2_to_uncompressed, bandage_image, bwa_mem2, upload1, fastqc, porechop, nanoplot, fastp, filtlong, polypolish, flye, quast	UseGalaxy.eu	UseGalaxy.cz, UseGalaxy.fr	0		10187	15281	3.416667	0
	Ecology	Checking expected species and contamination in bacterial isolate	https://training.galaxyproject.org//topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.html	Whole genome sequencing, Genomics, Microbiology, Microbial ecology	Statistical calculation, Expression analysis, Cross-assembly, Taxonomic classification	2024-03-04	2024-06-27	4	True	False	False	True	recentrifuge, upload1, kraken2, est_abundance	UseGalaxy.eu, UseGalaxy.fr	Galaxy@AuBi, GalaxyTrakr, UseGalaxy.cz, UseGalaxy.org (Main)	0		813	1091	3.350000	0
	Evolution	Tree thinking for tuberculosis evolution and epidemiology	https://training.galaxyproject.org//topics/evolution/tutorials/mtb_phylogeny/tutorial.html	Genomics, Microbiology, Phylogeny, Infectious disease	Sequence analysis, Phylogenetic tree analysis	2022-03-16	2025-06-04	12	True	False	False	True	interactive_tool_rstudio, raxml, upload1	UseGalaxy.eu		0		2167	3129	2.266667	0
	Evolution	Identifying tuberculosis transmission links: from SNPs to transmission clusters	https://training.galaxyproject.org//topics/evolution/tutorials/mtb_transmission/tutorial.html	Genomics, Microbiology, Infectious disease, DNA polymorphism	Antimicrobial resistance prediction, Phylogenetic tree generation, Phylogenetic tree visualisation, Variant calling	2022-03-16	2025-05-26	13	True	False	False	True	tb_variant_filter, tp_sed_tool, tp_replace_in_line, clustering_from_distmat, collapse_dataset, tp_cat, trimmomatic, snp_dists, samtools_view, snippy, snp_sites, bcftools_consensus, tp_easyjoin_tool, Grep1, tp_grep_tool, __MERGE_COLLECTION__, upload1, tb_profiler_profile, addName	UseGalaxy.eu		0		2657	3823	2.833333	0
	Evolution	Phylogenetic analysis for bacterial comparative genomics	https://training.galaxyproject.org//topics/evolution/tutorials/bacterial-comparative-genomics/tutorial.html	Genomics, Microbiology, Phylogeny	Phylogenetic tree generation (from molecular sequences), Phylogenetic tree generation (maximum likelihood and Bayesian methods)	2025-03-14	2025-03-14	1	True	False	False	False	fasttree, upload1	GalaxyTrakr, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main)	Galaxy@AuBi	0		81	102	3.966667	0
	Genome Annotation	Genome annotation with Prokka	https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html	Genomics, Microbiology, Gene and protein families, Sequence analysis	Genome annotation, Gene prediction, Coding region prediction, Genome visualisation	2018-03-06	2025-03-19	26	True	True	True	True	prokka, jbrowse	UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main)	Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au	0		2863372	7560948	4.366667	0
	Genome Annotation	Refining Genome Annotations with Apollo (prokaryotes)	https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo/tutorial.html	Genomics, Microbiology, Gene and protein families, Sequence analysis	Genome visualisation	2021-06-04	2025-05-15	22	True	True	True	True	create_or_update, jbrowse, iframe, create_account, list_organism		UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no	0		2619764	6752999	5.116667	0
	Genome Annotation	Identification of AMR genes in an assembled bacterial genome	https://training.galaxyproject.org//topics/genome-annotation/tutorials/amr-gene-detection/tutorial.html	Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Sequence analysis, Infectious disease, Antimicrobial resistance	Antimicrobial resistance prediction, Read mapping, Genome annotation, Genome visualisation	2024-01-23	2025-06-10	9	True	False	True	True	jbrowse, upload1, tbl2gff3, staramr_search, Grep1, bakta, bowtie2	UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr	Galaxy@AuBi, UseGalaxy.org (Main)	0		3221	4425	2.950000	0
	Genome Annotation	Bacterial Genome Annotation	https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-annotation/tutorial.html	Genomics, Microbiology, Gene and protein families, Sequence analysis, Whole genome sequencing, Functional genomics, Mobile genetic elements	Sequence motif recognition, Genome assembly, Genome visualisation, Protein feature detection, Genome annotation, Nucleic acid feature detection, Multilocus sequence typing, Scaffolding, Structural variation detection	2024-02-01	2024-10-15	6	True	False	True	True	Grouping1, jbrowse, upload1, tp_replace_in_column, isescan, tp_tail_tool, tbl2gff3, bakta, integron_finder, plasmidfinder	UseGalaxy.eu, UseGalaxy.fr	Galaxy@AuBi, UseGalaxy.cz, UseGalaxy.org (Main)	0		5939	7985	2.550000	0
	Genome Annotation	Bacterial genome quality control	https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-quality-control/tutorial.html	Genomics, Microbiology	Statistical calculation, Sequence composition calculation, Genome comparison, Validation, Sequencing quality control, Sequence assembly validation	2025-03-14	2025-03-14	1	True	False	False	False	drep_dereplicate, checkm2, upload1	UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main)		0		67	74	2.916667	0
	Genome Annotation	Dataset construction for bacterial comparative genomics	https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-comparative-genomics-dataset-construction/tutorial.html	Genomics, Microbiology	Sequence database search, Data retrieval, Data handling	2025-03-14	2025-03-14	1	True	False	False	False	upload1, Remove beginning1, bg_uniq, cat1, Cut1, datasets_download_genome, sort1	UseGalaxy.fr	UseGalaxy.cz	0		67	80	3.366667	0
	Genome Annotation	Comparative gene analysis in unannotated genomes	https://training.galaxyproject.org//topics/genome-annotation/tutorials/gene-centric/tutorial.html	Genomics, Gene and protein families, Sequence analysis, Phylogeny, Comparative genomics	De-novo assembly, Database search, Coding region prediction, Sequence alignment analysis, Transcriptome assembly, Phylogenetic tree generation, Multiple sequence alignment	2022-09-08	2025-06-03	10	True	False	False	True	join1, bg_diamond, tp_split_on_column, collapse_dataset, tab2fasta, Filter1, Add_a_column1, regexColumn1, rapidnj, cat1, Cut1, orfipy, gops_intersect_1, rbc_mafft, bg_diamond_makedb, bg_diamond_view	UseGalaxy.eu, UseGalaxy.org (Main)	UseGalaxy.cz	0		1792	2538	3.100000	0
	Genome Annotation	Essential genes detection with Transposon insertion sequencing	https://training.galaxyproject.org//topics/genome-annotation/tutorials/tnseq/tutorial.html	Genomics, Microbiology, Sequence analysis, Mobile genetic elements	Transposon prediction, Sequence trimming, Primer removal, Read pre-processing	2019-07-02	2024-03-18	12	True	True	False	True	cutadapt, tp_easyjoin_tool, gff_to_prot, bowtie_wrapper, Filter1, Add_a_column1, transit_gumbel, Cut1, tp_sort_header_tool, deeptools_bam_coverage, bg_find_subsequences, __EXTRACT_DATASET__	UseGalaxy.no, UseGalaxy.org.au	UseGalaxy.cz, UseGalaxy.eu	0		2852966	7544276	4.200000	0
	Variant Analysis	Microbial Variant Calling	https://training.galaxyproject.org//topics/variant-analysis/tutorials/microbial-variants/tutorial.html	Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation	Genome visualisation, Phylogenetic tree generation, Phylogenetic tree visualisation, Variant calling	2018-02-26	2025-03-19	24	True	False	False	True	snippy, jbrowse	UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main)	GalaxyTrakr, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au	0		14933	23903	2.033333	0
	Microbiome	Analyses of metagenomics data - The global picture	https://training.galaxyproject.org//topics/microbiome/tutorials/general-tutorial/tutorial.html	Metagenomics, Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding	Phylogenetic analysis, DNA barcoding, Sequencing quality control, Sequence read processing, Taxonomic classification, Sequence clustering, Visualisation	2017-06-22	2024-08-09	4	True	False	False	True	mothur_screen_seqs, mothur_make_group, mothur_classify_otu, metaphlan2, mothur_unique_seqs, mothur_summary_seqs, mothur_count_seqs, metaphlan2krona, mothur_merge_files, mothur_align_seqs, humann2_renorm_table, humann2, mothur_make_shared, krona-text, mothur_pre_cluster, mothur_make_biom, mothur_classify_seqs, humann2_regroup_table, taxonomy_krona_chart, mothur_cluster_split, mothur_filter_seqs		UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au	0		7951	10780	2.716667	0
	Microbiome	Metatranscriptomics analysis using microbiome RNA-seq data (short)	https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics-short/tutorial.html	Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis	Statistical calculation, Phylogenetic tree editing, Sequence alignment analysis, Phylogenetic analysis, Phylogenetic tree visualisation, Primer removal, Sequence trimming, Sequencing quality control, Taxonomic classification, Conversion, Sequence composition calculation, Read pre-processing, Validation, Visualisation, Species frequency estimation, Sequence similarity search, Sequence comparison, Phylogenetic inference	2020-02-13	2025-06-16	6	True	False	True	True	metaphlan, bg_sortmerna, humann_unpack_pathways, tp_find_and_replace, fastq_paired_end_interlacer, humann_rename_table, multiqc, graphlan_annotate, tp_sort_header_tool, humann_renorm_table, humann_regroup_table, humann, combine_metaphlan2_humann2, Grep1, humann_split_stratified_table, graphlan, cutadapt, fastqc, taxonomy_krona_chart, Cut1, export2graphlan	UseGalaxy.org (Main), UseGalaxy.org.au	UseGalaxy.cz, UseGalaxy.no	0		691	881	2.300000	0
	Microbiome	Building an amplicon sequence variant (ASV) table from 16S data using DADA2	https://training.galaxyproject.org//topics/microbiome/tutorials/dada-16S/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding	Analysis, Visualisation, Deposition, DNA barcoding, Variant calling	2024-06-05	2025-07-03	11	True	False	True	True	dada2_makeSequenceTable, Grouping1, tp_replace_in_line, dada2_filterAndTrim, Add_a_column1, tp_replace_in_column, phyloseq_from_dada2, __SORTLIST__, dada2_plotQualityProfile, interactive_tool_phyloseq, dada2_dada, dada2_removeBimeraDenovo, dada2_learnErrors, dada2_assignTaxonomyAddspecies, __UNZIP_COLLECTION__, dada2_mergePairs, collection_element_identifiers, tp_head_tool, dada2_seqCounts, cat1	UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main), UseGalaxy.org.au		0		6280	8875	2.383333	0
	Microbiome	Taxonomic Profiling and Visualization of Metagenomic Data	https://training.galaxyproject.org//topics/microbiome/tutorials/taxonomic-profiling/tutorial.html	Metagenomics, Microbial ecology, Taxonomy, Sequence analysis	Statistical calculation, Genome annotation, Aggregation, Visualisation, Taxonomic classification	2023-05-03	2025-04-24	6	True	False	True	True	interactive_tool_pavian, metaphlan, interactive_tool_phinch, krakentools_kreport2krona, taxonomy_krona_chart, kraken2, est_abundance, __UNZIP_COLLECTION__, kraken_biom	UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main), UseGalaxy.org.au		0		11417	15283	2.016667	0
	Microbiome	16S Microbial analysis with Nanopore data	https://training.galaxyproject.org//topics/microbiome/tutorials/nanopore-16S-metagenomics/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding	Statistical calculation, Sequence contamination filtering, Sequence composition calculation, Validation, Visualisation, Sequencing quality control, Taxonomic classification	2020-11-24	2024-07-31	5	True	False	False	True	multiqc, fastqc, tp_replace_in_line, porechop, datamash_reverse, Remove beginning1, taxonomy_krona_chart, kraken2, fastp	UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main), UseGalaxy.org.au	GalaxyTrakr, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr	0		7623	10518	2.600000	0
	Microbiome	Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition	https://training.galaxyproject.org//topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.html	Metagenomics, Public health and epidemiology, Taxonomy, Sequence assembly, Pathology, Sequence analysis	Genome assembly, Phylogenetic tree generation (maximum likelihood and Bayesian methods), Sequence assembly visualisation, Box-Whisker plot plotting, Data handling, Phylogenetic tree generation (from molecular sequences), Phylogenetic tree generation, Variant calling, Taxonomic classification, Scatter plot plotting, Aggregation, Phylogenetic tree reconstruction, Validation, Visualisation, De-novo assembly, Mapping assembly, Sequence assembly, Statistical calculation, Mapping, Sequence alignment analysis, Antimicrobial resistance prediction, Sequencing quality control, Multiple sequence alignment, Base-calling, Phylogenetic tree analysis, Multilocus sequence typing, Sequence composition calculation, Cross-assembly, Pairwise sequence alignment, Sequence contamination filtering	2023-01-26	2024-09-27	11	True	False	True	True	Grouping1, tp_sorted_uniq, param_value_from_file, porechop, snpSift_filter, tp_multijoin_tool, collapse_dataset, tab2fasta, Add_a_column1, split_file_to_collection, snpSift_extractFields, tp_find_and_replace, fasta_merge_files_and_filter_unique_sequences, flye, __FILTER_FAILED_DATASETS__, Count1, tp_cut_tool, barchart_gnuplot, bcftools_norm, medaka_consensus_pipeline, multiqc, bedtools_getfastabed, tp_replace_in_column, bamtools_split_mapped, table_compute, abricate, Remove beginning1, kraken2, minimap2, nanoplot, samtools_coverage, samtools_fastx, fasttree, compose_text_param, bcftools_consensus, regex1, krakentools_kreport2krona, regexColumn1, clair3, Grep1, Paste1, __BUILD_LIST__, clustalw, newick_display, __FILTER_EMPTY_DATASETS__, krakentools_extract_kraken_reads, mlst, tp_split_on_column, collection_element_identifiers, fastqc, tp_head_tool, CONVERTER_gz_to_uncompressed, samtools_depth, taxonomy_krona_chart, ggplot2_heatmap, fastp, Cut1, collection_column_join, bandage_image, add_line_to_file, fasta2tab	UseGalaxy.eu	UseGalaxy.cz, UseGalaxy.org.au	0		4630	6981	3.416667	0
	Microbiome	Metatranscriptomics analysis using microbiome RNA-seq data	https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics/tutorial.html	Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis	Phylogenetic tree editing, Taxonomic classification, Aggregation, Validation, Visualisation, Read pre-processing, Statistical calculation, Phylogenetic tree visualisation, Sequence alignment analysis, Phylogenetic analysis, Primer removal, Sequence trimming, Sequencing quality control, Conversion, Sequence composition calculation, Species frequency estimation, Sequence similarity search, Sequence comparison, Phylogenetic inference	2019-11-21	2025-06-16	6	True	True	True	True	metaphlan, Grouping1, bg_sortmerna, humann_unpack_pathways, tp_find_and_replace, fastq_paired_end_interlacer, humann_rename_table, multiqc, graphlan_annotate, tp_sort_header_tool, humann_renorm_table, humann_regroup_table, humann, combine_metaphlan_humann, Grep1, humann_split_stratified_table, graphlan, cutadapt, fastqc, taxonomy_krona_chart, Cut1, export2graphlan	UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.org (Main)	UseGalaxy.eu	0		2851586	7538037	4.316667	0
	Microbiome	Assembly of metagenomic sequencing data	https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-assembly/tutorial.html	Metagenomics, Sequence assembly	Genome assembly, Sequence assembly visualisation, Data handling, Variant calling, Local alignment, Formatting, Read mapping, Visualisation, Sequence file editing, Read pre-processing, Statistical calculation, Sequence alignment analysis, Sequence trimming, Primer removal, Sequencing quality control, Sequence composition calculation, Sequence contamination filtering, Sequence assembly validation	2022-12-05	2025-06-16	6	True	False	True	True	coverm_contig, filter_tabular, random_lines1, cutadapt, fastqc, megahit_contig2fastg, ngsutils_bam_filter, megahit, bg_uniq, bandage_info, collection_column_join, seqtk_subseq, bandage_image, metaspades, bowtie2, quast, bamtools, tp_cat		UseGalaxy.cz, UseGalaxy.eu	0		4120	5765	3.033333	0
	Microbiome	Identification of the micro-organisms in a beer using Nanopore sequencing	https://training.galaxyproject.org//topics/microbiome/tutorials/beer-data-analysis/tutorial.html	Metagenomics, Microbial ecology, Taxonomy, Sequence analysis	Statistical calculation, Sequence contamination filtering, Aggregation, Sequence composition calculation, Visualisation, Sequencing quality control, Taxonomic classification	2022-09-29	2024-11-29	5	True	False	True	True	fastqc, porechop, krakentools_kreport2krona, Filter1, taxonomy_krona_chart, kraken2, fastp	GalaxyTrakr, UseGalaxy.eu, UseGalaxy.org (Main), UseGalaxy.org.au	UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no	0		2502	3630	2.833333	0
	Microbiome	Antibiotic resistance detection	https://training.galaxyproject.org//topics/microbiome/tutorials/plasmid-metagenomics-nanopore/tutorial.html	Metagenomic sequencing, Public health and epidemiology, Metagenomics, Microbiology, Infectious disease, Sequence analysis, Antimicrobial resistance	Genome assembly, Sequence assembly visualisation, Box-Whisker plot plotting, Antimicrobial resistance prediction, Sequence analysis, De-novo assembly, Scatter plot plotting, Aggregation, Pairwise sequence alignment, Mapping assembly	2019-06-25	2024-06-14	4	True	False	True	True	unicycler, miniasm, racon, nanoplot, minimap2, staramr_search, bandage_image, gfa_to_fa, PlasFlow	UseGalaxy.eu	UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main), UseGalaxy.org.au	0		3096	4347	2.950000	0
	Microbiome	QIIME 2 Moving Pictures	https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-moving-pictures/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding		2024-03-14	2024-03-14	1	external	False	False	False			UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr	0		520	812	2.916667	0
	Microbiome	Binning of metagenomic sequencing data	https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-binning/tutorial.html	Metagenomics, Sequence assembly	Statistical calculation, Genome assembly, Sequence composition calculation, Validation, Sequencing quality control, Sequence assembly validation	2023-12-05	2025-05-15	6	True	False	True	False	checkm_lineage_wf, megahit	GalaxyTrakr, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr	UseGalaxy.org (Main), UseGalaxy.org.au	0		5215	6400	1.533333	0
	Microbiome	QIIME 2 Cancer Microbiome Intervention	https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-cancer-microbiome-intervention/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding		2024-02-12	2024-03-14	3	external	False	False	False			UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr	0		380	611	3.233333	0
	Microbiome	16S Microbial Analysis with mothur (short)	https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop-short/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding	Phylogenetic analysis, DNA barcoding, Phylogenetic tree generation, Sequencing quality control, Sequence read processing, Taxonomic classification, Sequence clustering, Phylogenetic tree analysis, Phylogenetic tree reconstruction, Visualisation	2019-05-13	2024-06-14	5	True	False	True	True	mothur_screen_seqs, mothur_remove_lineage, mothur_classify_otu, collapse_dataset, mothur_unique_seqs, mothur_sub_sample, mothur_heatmap_sim, mothur_summary_seqs, mothur_count_seqs, mothur_venn, mothur_rarefaction_single, mothur_cluster, mothur_chimera_vsearch, mothur_make_shared, mothur_remove_groups, mothur_tree_shared, mothur_dist_shared, mothur_summary_single, mothur_count_groups, newick_display, mothur_remove_seqs, mothur_pre_cluster, mothur_classify_seqs, mothur_dist_seqs, mothur_cluster_split, XY_Plot_1, mothur_filter_seqs	UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main), UseGalaxy.org.au	UseGalaxy.cz, UseGalaxy.fr	0		4951	8234	4.600000	0
	Microbiome	16S Microbial Analysis with mothur (extended)	https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop/tutorial.html	Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding	Phylogenetic analysis, DNA barcoding, Phylogenetic tree generation, Sequencing quality control, Sequence read processing, Taxonomic classification, Sequence clustering, Phylogenetic tree analysis, Phylogenetic tree reconstruction, Visualisation	2017-02-12	2024-03-14	4	True	False	False	True	mothur_screen_seqs, mothur_remove_lineage, mothur_taxonomy_to_krona, mothur_get_groups, mothur_classify_otu, mothur_unique_seqs, mothur_make_contigs, mothur_sub_sample, mothur_heatmap_sim, mothur_summary_seqs, mothur_count_seqs, mothur_venn, mothur_rarefaction_single, mothur_cluster, mothur_align_seqs, mothur_seq_error, mothur_chimera_vsearch, mothur_make_shared, mothur_remove_groups, mothur_tree_shared, mothur_dist_shared, mothur_summary_single, mothur_count_groups, newick_display, mothur_remove_seqs, mothur_pre_cluster, mothur_make_biom, mothur_classify_seqs, mothur_dist_seqs, taxonomy_krona_chart, mothur_cluster_split, XY_Plot_1, mothur_filter_seqs	UseGalaxy.be, UseGalaxy.eu	UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main), UseGalaxy.org.au	0		11419	16756	2.766667	0
	Variant Analysis	M. tuberculosis Variant Analysis	https://training.galaxyproject.org//topics/variant-analysis/tutorials/tb-variant-analysis/tutorial.html	Genomics, Microbiology, Sequence assembly, Genetic variation, Public health and epidemiology, Infectious disease	Statistical calculation, Phylogenetic tree visualisation, Sequence alignment analysis, Antimicrobial resistance prediction, Phylogenetic tree generation, Sequencing quality control, Taxonomic classification, Variant calling, Sequence analysis, Genome visualisation, Local alignment, Sequence alignment, Global alignment, Sequence composition calculation, Validation, Sequence contamination filtering	2020-07-25	2024-07-26	30	True	False	True	True	tb_variant_filter, tp_sed_tool, mosdepth, samtools_stats, qualimap_bamqc, multiqc, kraken2, jvarkit_wgscoverageplotter, snippy, bcftools_consensus, EMBOSS:%20seqret84, tp_awk_tool, EMBOSS: seqret84, tbvcfreport, jbrowse, upload1, fastqc, tb_profiler_profile, fastp, __FLATTEN__			0		7388	11435	3.016667	0
	Proteomics	metaQuantome 3: Taxonomy	https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-taxonomy/tutorial.html	Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics, Taxonomy	Functional clustering, Heat map generation, Filtering, Indexing, Principal component visualisation, Visualisation, Statistical inference, Differential protein expression analysis, Quantification, Query and retrieval	2020-10-29	2024-03-15	14	True	False	False	True	metaquantome_sample, metaquantome_expand, metaquantome_stat, metaquantome_db, metaquantome_viz, metaquantome_filter	UseGalaxy.be, UseGalaxy.eu	UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au	0		438	576	2.366667	0
	Proteomics	metaQuantome 1: Data creation	https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-data-creation/tutorial.html	Proteomics, Proteogenomics, Biodiversity, Taxonomy	Formatting, Label-free quantification, Visualisation, Filtering, Prediction and recognition	2020-10-16	2024-03-14	20	True	False	False	True	msconvert, tp_replace_in_column, tp_replace_in_line, regex1, query_tabular, Remove beginning1, Filter1, peptide_shaker, unipept, flashlfq, Cut1, search_gui, Grep1	UseGalaxy.eu	UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org.au	0		879	1492	3.800000	0
	Proteomics	metaQuantome 2: Function	https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-function/tutorial.html	Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics	Functional clustering, Heat map generation, Filtering, Indexing, Principal component visualisation, Visualisation, Statistical inference, Differential protein expression analysis, Quantification, Query and retrieval	2020-10-29	2024-03-15	14	True	False	False	True	metaquantome_sample, metaquantome_expand, metaquantome_stat, metaquantome_db, metaquantome_viz, metaquantome_filter	UseGalaxy.eu	UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au	0		408	579	4.233333	0
	Proteomics	Metaproteomics tutorial	https://training.galaxyproject.org//topics/proteomics/tutorials/metaproteomics/tutorial.html	Proteomics, Proteogenomics, Biodiversity, Taxonomy	Visualisation, Prediction and recognition	2017-06-28	2024-06-14	41	True	False	True	True	query_tabular, sqlite_to_tabular, unipept, search_gui, peptide_shaker	UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main), UseGalaxy.org.au	UseGalaxy.be, UseGalaxy.cz	0		2867	4572	2.716667	0
	Sequence analysis	Quality and contamination control in bacterial isolate using Illumina MiSeq Data	https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.html	Whole genome sequencing, Genomics, Microbiology, Microbial ecology	Statistical calculation, Expression analysis, Sequencing quality control, Taxonomic classification, Cross-assembly, Read mapping, Visualisation, Sequence contamination filtering	2024-07-15	2025-03-20	4	True	False	True	True	upload1, falco, kraken2, fastp, est_abundance, recentrifuge	UseGalaxy.eu, UseGalaxy.fr	UseGalaxy.cz, UseGalaxy.org (Main)	0		1487	1934	2.850000	0
	Variant Analysis	Calling variants in non-diploid systems	https://training.galaxyproject.org//topics/variant-analysis/tutorials/non-dip/tutorial.html	Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation	Statistical calculation, Generation, Sequence alignment analysis, Genome indexing, Data handling, Sequencing quality control, Variant calling, Formatting, Sequence alignment, Sequence composition calculation, Read mapping	2017-02-16	2024-03-15	23	True	False	False	True	picard_MarkDuplicates, bwa_mem, fastqc, bamleftalign, vcffilter2, bamFilter, vcf2tsv, picard_MergeSamFiles, Cut1, freebayes	UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main)	UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org.au	0		8501	15358	2.150000	0