|
FAIR Data, Workflows, and Research |
FAIR Bioimage Metadata |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-metadata/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
329 |
390 |
2.133333 |
0 |
|
FAIR Data, Workflows, and Research |
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-REMBI/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
9 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
324 |
374 |
2.083333 |
0 |
|
Imaging |
Using BioImage.IO models for image analysis in Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/process-image-bioimageio/tutorial.html |
|
Image analysis |
2025-04-09 |
2025-11-26 |
8 |
True |
False |
False |
True |
image_math, ip_threshold, ip_binary_to_labelimage, ip_split_image, bioimage_inference, ip_overlay_images, __EXTRACT_DATASET__ |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
221 |
261 |
2.933333 |
0 |
|
Imaging |
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/omero-suite/tutorial.html |
|
Image analysis |
2024-12-04 |
2026-01-21 |
7 |
True |
False |
False |
False |
omero_metadata_import, omero_get_id, omero_get_value, omero_filter, omero_roi_import, omero_import |
|
|
0 |
|
226 |
288 |
2.483333 |
0 |
|
Imaging |
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/parameter-tuning/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2025-04-28 |
2026-01-21 |
4 |
True |
False |
False |
True |
ip_threshold, ip_segmetrics, ip_histogram_equalization, ip_filter_standard, tp_split_on_column, collapse_dataset, param_value_from_file |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
119 |
133 |
1.300000 |
0 |
|
Imaging |
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines |
https://training.galaxyproject.org//topics/imaging/tutorials/2D-spot-detection/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2025-03-20 |
2025-11-26 |
5 |
True |
False |
False |
True |
ip_histogram_equalization, idr_download_by_ids, ip_binary_to_labelimage, ip_overlay_images, __EXTRACT_DATASET__, ip_spot_detection_2d, ip_points_to_label, unzip |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
|
0 |
|
234 |
280 |
1.500000 |
0 |
|
Imaging |
Object tracking using CellProfiler |
https://training.galaxyproject.org//topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html |
|
Parsing, Image analysis, Quantification |
2021-03-17 |
2025-11-26 |
11 |
True |
False |
False |
True |
cp_tile, cp_measure_object_size_shape, cp_measure_object_intensity, cp_track_objects, cp_overlay_outlines, cp_identify_primary_objects, cp_export_to_spreadsheet, cp_color_to_gray, cp_common, cp_cellprofiler, cp_save_images, unzip |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org.au |
UseGalaxy.cz |
0 |
|
2240 |
2782 |
1.066667 |
0 |
|
Imaging |
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools |
https://training.galaxyproject.org//topics/imaging/tutorials/electrophoresis-gel-bands-image-analysis/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2025-08-11 |
2025-11-26 |
3 |
True |
False |
False |
True |
ip_points_to_label, interactive_tool_qupath, ip_imageinfo, ip_split_image, ip_2d_feature_extraction, __EXTRACT_DATASET__, graphicsmagick_image_convert |
UseGalaxy.eu |
|
0 |
|
354 |
419 |
0.933333 |
0 |
|
Imaging |
Nucleoli segmentation and feature extraction using CellProfiler |
https://training.galaxyproject.org//topics/imaging/tutorials/tutorial-CP/tutorial.html |
|
Parsing, Image analysis, Quantification |
2020-07-01 |
2025-11-26 |
12 |
True |
True |
False |
True |
cp_enhance_or_suppress_features, cp_measure_object_intensity, cp_common, cp_export_to_spreadsheet, cp_gray_to_color, cp_relate_objects, cp_convert_objects_to_image, cp_display_data_on_image, cp_measure_image_intensity, cp_measure_image_quality, cp_save_images, cp_mask_image, cp_cellprofiler, cp_measure_granularity, cp_measure_image_area_occupied, cp_measure_object_size_shape, cp_measure_texture, idr_download_by_ids, cp_identify_primary_objects, cp_image_math |
UseGalaxy.be, UseGalaxy.eu |
Galaxy@AuBi, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org.au |
0 |
|
3426157 |
8375620 |
3.400000 |
0 |
|
Imaging |
Voronoi segmentation |
https://training.galaxyproject.org//topics/imaging/tutorials/voronoi-segmentation/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2025-05-13 |
2025-11-26 |
7 |
True |
False |
False |
True |
image_math, ip_threshold, ip_filter_standard, ip_count_objects, ip_convertimage, ip_binary_to_labelimage, ip_imageinfo, ip_overlay_images, ip_2d_feature_extraction, repeat_channels, colorize_labels, voronoi_tessellation, unzip |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
340 |
489 |
3.116667 |
0 |
|
Imaging |
Tracking of mitochondria and capturing mitoflashes |
https://training.galaxyproject.org//topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html |
|
Image analysis |
2024-11-20 |
2025-11-26 |
5 |
True |
False |
False |
True |
ip_curve_fitting, ip_spot_detection_2d, ip_points_association_nn |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
211 |
243 |
1.083333 |
0 |
|
Imaging |
Introduction to Image Analysis using Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/imaging-introduction/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2019-08-13 |
2026-01-18 |
18 |
True |
False |
False |
True |
ip_threshold, ip_histogram_equalization, ip_filter_standard, ip_count_objects, ip_binary_to_labelimage, ip_imageinfo, ip_overlay_images, unzip |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org.au |
|
0 |
|
2753 |
3818 |
1.716667 |
0 |
|
Imaging |
Training Custom YOLO Models for Segmentation of Bioimages |
https://training.galaxyproject.org//topics/imaging/tutorials/yolo-segmentation-training/tutorial.html |
|
Visualisation, Image annotation, Data handling, Image analysis |
2025-07-25 |
2025-11-26 |
7 |
True |
False |
False |
True |
json2yolosegment, ip_histogram_equalization, interactive_tool_anylabeling, yolo_training, graphicsmagick_image_convert, unzip |
UseGalaxy.eu |
|
0 |
|
292 |
354 |
0.916667 |
0 |
|
Imaging |
End-to-End Tissue Microarray Image Analysis with Galaxy-ME |
https://training.galaxyproject.org//topics/imaging/tutorials/multiplex-tissue-imaging-TMA/tutorial.html |
|
|
2023-02-14 |
2025-11-26 |
9 |
True |
False |
False |
True |
unet_coreograph, vitessce_spatial, scimap_mcmicro_to_anndata, ip_convertimage, scanpy_compute_graph, palom, squidpy_spatial, celesta, ashlar, basic_illumination, gate_finder, scimap_phenotyping, quantification, rename_tiff_channels, mesmer |
|
|
0 |
|
1514 |
2036 |
1.766667 |
0 |
|
Imaging |
Analyse HeLa fluorescence siRNA screen |
https://training.galaxyproject.org//topics/imaging/tutorials/hela-screen-analysis/tutorial.html |
|
Image annotation, Image analysis, Data handling, Visualisation |
2019-08-13 |
2026-01-18 |
16 |
True |
False |
False |
True |
ip_threshold, ip_filter_standard, ip_binary_to_labelimage, ip_2d_feature_extraction, collapse_dataset, ip_2d_filter_segmentation_by_features, unzip |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org.au |
UseGalaxy.no |
0 |
|
819 |
1061 |
1.966667 |
0 |