|
Galaxy Server administration |
Galaxy on the Cloud |
https://training.galaxyproject.org//topics/admin/tutorials/cloudbursting/slides.html |
|
|
2019-01-31 |
2024-12-19 |
7 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035274 |
2.100000 |
0 |
|
Galaxy Server administration |
External Authentication |
https://training.galaxyproject.org//topics/admin/tutorials/external-auth/tutorial.html |
|
|
2019-01-28 |
2022-10-18 |
14 |
True |
True |
False |
False |
|
|
|
0 |
|
3811000 |
9036436 |
8.900000 |
0 |
|
Galaxy Server administration |
Reference Data with Data Managers |
https://training.galaxyproject.org//topics/admin/tutorials/reference-genomes/tutorial.html |
|
Sequence alignment, Generation, Genome indexing, Read mapping |
2019-01-28 |
2026-01-23 |
7 |
True |
True |
False |
False |
bwa, bwa_mem_index_builder_data_manager, data_manager_fetch_genome_all_fasta_dbkey |
|
|
0 |
|
3810965 |
9036185 |
15.600000 |
0 |
|
Galaxy Server administration |
Distributed Object Storage |
https://training.galaxyproject.org//topics/admin/tutorials/object-store/tutorial.html |
|
|
2019-01-28 |
2025-03-24 |
28 |
True |
True |
True |
False |
|
|
|
0 |
|
3811669 |
9037476 |
8.033333 |
0 |
|
Galaxy Server administration |
Galaxy Monitoring |
https://training.galaxyproject.org//topics/admin/tutorials/general-monitoring/slides.html |
|
|
2019-04-26 |
2022-03-01 |
5 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035274 |
2.100000 |
0 |
|
Galaxy Server administration |
Setting up Celery Workers for Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/celery/tutorial.html |
|
|
2022-07-16 |
2025-11-24 |
19 |
True |
True |
False |
False |
|
|
|
0 |
|
2955160 |
6214906 |
10.233333 |
0 |
|
Galaxy Server administration |
Docker and Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/galaxy-docker/slides.html |
|
|
2016-09-29 |
2022-10-18 |
16 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035275 |
2.100000 |
0 |
|
Galaxy Server administration |
Galaxy Monitoring with Telegraf and Grafana |
https://training.galaxyproject.org//topics/admin/tutorials/monitoring/tutorial.html |
|
|
2019-01-31 |
2026-04-29 |
56 |
True |
True |
True |
False |
|
|
|
0 |
|
3813268 |
9040771 |
6.083333 |
0 |
|
Galaxy Server administration |
Ansible |
https://training.galaxyproject.org//topics/admin/tutorials/ansible/tutorial.html |
|
|
2018-07-11 |
2024-08-08 |
48 |
True |
True |
True |
False |
|
|
|
0 |
|
3816921 |
9047071 |
7.650000 |
0 |
|
Galaxy Server administration |
Empathy |
https://training.galaxyproject.org//topics/admin/tutorials/empathy/slides.html |
|
|
2019-01-31 |
2021-04-06 |
4 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035275 |
2.100000 |
0 |
|
Galaxy Server administration |
Server: Other |
https://training.galaxyproject.org//topics/admin/tutorials/stuff/slides.html |
|
|
2018-01-07 |
2023-02-17 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035275 |
2.100000 |
0 |
|
Galaxy Server administration |
Galaxy from an administrator's point of view |
https://training.galaxyproject.org//topics/admin/tutorials/introduction/slides.html |
|
|
2017-06-12 |
2024-06-25 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035275 |
2.100000 |
0 |
|
Galaxy Server administration |
Galaxy Installation with Ansible |
https://training.galaxyproject.org//topics/admin/tutorials/ansible-galaxy/tutorial.html |
Database management, Informatics, Data management |
|
2019-01-28 |
2026-01-23 |
109 |
True |
True |
True |
False |
|
|
|
0 |
|
3836407 |
9083525 |
5.666667 |
0 |
|
Galaxy Server administration |
Galaxy Administrator Time Burden and Technology Usage |
https://training.galaxyproject.org//topics/admin/tutorials/poll-ssa/slides.html |
|
|
2024-07-10 |
2024-07-10 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
1806971 |
3439362 |
1.600000 |
0 |
|
Galaxy Server administration |
Galaxy Monitoring with gxadmin |
https://training.galaxyproject.org//topics/admin/tutorials/gxadmin/tutorial.html |
|
|
2019-01-28 |
2025-11-13 |
27 |
True |
True |
True |
False |
|
|
|
0 |
|
3811213 |
9036762 |
14.683333 |
0 |
|
Galaxy Server administration |
Galaxy Tool Management with Ephemeris |
https://training.galaxyproject.org//topics/admin/tutorials/tool-management/tutorial.html |
|
|
2019-01-27 |
2025-04-03 |
39 |
True |
True |
True |
False |
|
|
|
0 |
|
3812369 |
9038228 |
11.883333 |
0 |
|
Galaxy Server administration |
Connecting Galaxy to a compute cluster |
https://training.galaxyproject.org//topics/admin/tutorials/connect-to-compute-cluster/tutorial.html |
|
|
2018-01-07 |
2025-11-24 |
65 |
True |
True |
True |
False |
|
|
|
0 |
|
3814494 |
9042494 |
10.300000 |
0 |
|
Galaxy Server administration |
Server Maintenance: Cleanup, Backup, and Restoration |
https://training.galaxyproject.org//topics/admin/tutorials/backup-cleanup/tutorial.html |
Database management, Informatics, Data management |
|
2019-01-31 |
2025-11-24 |
10 |
True |
True |
True |
False |
|
|
|
0 |
|
3810900 |
9036138 |
16.900000 |
0 |
|
Galaxy Server administration |
Running Jobs on Remote Resources with Pulsar |
https://training.galaxyproject.org//topics/admin/tutorials/pulsar/tutorial.html |
|
|
2019-01-28 |
2026-01-23 |
59 |
True |
True |
True |
False |
|
|
|
0 |
|
3812982 |
9039698 |
9.683333 |
0 |
|
Galaxy Server administration |
uWSGI |
https://training.galaxyproject.org//topics/admin/tutorials/uwsgi/slides.html |
|
|
2019-01-28 |
2022-03-01 |
9 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Gearing towards production |
https://training.galaxyproject.org//topics/admin/tutorials/production/slides.html |
|
|
2019-01-28 |
2025-11-20 |
11 |
False |
True |
True |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Galaxy Troubleshooting |
https://training.galaxyproject.org//topics/admin/tutorials/troubleshooting/slides.html |
|
|
2019-01-28 |
2024-06-25 |
15 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Galactic Database |
https://training.galaxyproject.org//topics/admin/tutorials/database/slides.html |
|
|
2019-01-28 |
2025-11-20 |
6 |
False |
True |
True |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Reference Data with CVMFS |
https://training.galaxyproject.org//topics/admin/tutorials/cvmfs/tutorial.html |
|
|
2019-01-27 |
2026-01-23 |
55 |
True |
True |
True |
False |
|
|
|
0 |
|
3812599 |
9038693 |
11.333333 |
0 |
|
Galaxy Server administration |
User, Role, Group, Quota, and Authentication managment |
https://training.galaxyproject.org//topics/admin/tutorials/users-groups-quotas/slides.html |
|
|
2018-01-07 |
2024-08-08 |
19 |
False |
True |
True |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Galaxy Interactive Tools |
https://training.galaxyproject.org//topics/admin/tutorials/interactive-tools/tutorial.html |
|
|
2020-02-27 |
2026-01-23 |
30 |
True |
True |
True |
False |
|
|
|
0 |
|
3812715 |
9038937 |
9.350000 |
0 |
|
Galaxy Server administration |
Controlling Galaxy with systemd or Supervisor |
https://training.galaxyproject.org//topics/admin/tutorials/systemd-supervisor/slides.html |
|
|
2019-01-28 |
2023-04-16 |
5 |
False |
True |
True |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Advanced customisation of a Galaxy instance |
https://training.galaxyproject.org//topics/admin/tutorials/advanced-galaxy-customisation/slides.html |
|
|
2017-06-27 |
2023-04-17 |
18 |
False |
True |
False |
False |
|
|
|
0 |
|
3810241 |
9035280 |
2.100000 |
0 |
|
Galaxy Server administration |
Data Libraries |
https://training.galaxyproject.org//topics/admin/tutorials/data-library/tutorial.html |
|
|
2021-01-14 |
2025-11-24 |
35 |
True |
True |
True |
False |
|
|
|
0 |
|
3794534 |
8972736 |
8.683333 |
0 |
|
Galaxy Server administration |
Training Infrastructure as a Service (TIaaS) |
https://training.galaxyproject.org//topics/admin/tutorials/tiaas/tutorial.html |
|
|
2020-02-12 |
2025-11-24 |
45 |
True |
False |
True |
False |
|
|
|
0 |
|
623 |
819 |
12.950000 |
0 |
|
Galaxy Server administration |
Alternative Celery Deployment for Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/celeryless/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
104 |
115 |
15.183333 |
0 |
|
Galaxy Server administration |
Mapping Jobs to Destinations using TPV |
https://training.galaxyproject.org//topics/admin/tutorials/job-destinations/tutorial.html |
|
|
2021-01-17 |
2026-01-23 |
44 |
True |
False |
True |
False |
|
|
|
0 |
|
1834 |
2811 |
11.116667 |
0 |
|
Galaxy Server administration |
Monitoring Galaxy and Pulsar with Sentry |
https://training.galaxyproject.org//topics/admin/tutorials/sentry/tutorial.html |
|
|
2023-04-19 |
2025-12-18 |
13 |
True |
False |
False |
False |
|
|
|
0 |
|
272 |
322 |
14.666667 |
0 |
|
Galaxy Server administration |
Adding file-sources to Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/file_sources/tutorial.html |
|
|
2025-01-20 |
2025-01-20 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
84 |
104 |
7.366667 |
0 |
|
Galaxy Server administration |
Performant Uploads with TUS |
https://training.galaxyproject.org//topics/admin/tutorials/tus/tutorial.html |
|
|
2022-03-01 |
2025-11-22 |
22 |
True |
False |
True |
False |
|
|
|
0 |
|
952 |
1366 |
14.100000 |
0 |
|
Galaxy Server administration |
Customizing the look of Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/customization/tutorial.html |
|
|
2023-04-16 |
2025-11-22 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
676 |
817 |
14.016667 |
0 |
|
Galaxy Server administration |
Create a subdomain for your community on UseGalaxy.eu |
https://training.galaxyproject.org//topics/admin/tutorials/subdomain/tutorial.html |
|
|
2024-11-27 |
2024-12-13 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
85 |
97 |
16.316667 |
0 |
|
Galaxy Server administration |
Galaxy Monitoring with Reports |
https://training.galaxyproject.org//topics/admin/tutorials/reports/tutorial.html |
|
|
2019-01-31 |
2026-01-23 |
49 |
True |
False |
False |
False |
|
|
|
0 |
|
559 |
729 |
15.433333 |
0 |
|
Galaxy Server administration |
Upgrading Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/upgrading/tutorial.html |
|
|
2021-06-08 |
2026-01-23 |
11 |
True |
False |
True |
False |
|
|
|
0 |
|
796 |
1191 |
7.766667 |
0 |
|
Galaxy Server administration |
Galaxy Database schema |
https://training.galaxyproject.org//topics/admin/tutorials/database-schema/tutorial.html |
|
|
2016-07-20 |
2025-04-08 |
23 |
True |
False |
False |
False |
|
|
|
0 |
|
3132 |
5067 |
2.483333 |
0 |
|
Galaxy Server administration |
Enable upload via FTP |
https://training.galaxyproject.org//topics/admin/tutorials/ftp/tutorial.html |
|
|
2021-06-18 |
2025-12-18 |
29 |
True |
False |
False |
False |
|
|
|
0 |
|
1352 |
1818 |
7.933333 |
0 |
|
Galaxy Server administration |
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) |
https://training.galaxyproject.org//topics/admin/tutorials/onedata-configuration/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
114 |
135 |
13.966667 |
0 |
|
Galaxy Server administration |
Reference Data with CVMFS without Ansible |
https://training.galaxyproject.org//topics/admin/tutorials/cvmfs-manual/tutorial.html |
|
|
2020-06-17 |
2026-01-23 |
10 |
True |
False |
False |
False |
|
|
|
0 |
|
485 |
632 |
9.816667 |
0 |
|
Galaxy Server administration |
Customizing the look of Galaxy (Manual) |
https://training.galaxyproject.org//topics/admin/tutorials/customization-manual/tutorial.html |
|
|
2023-04-16 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
247 |
290 |
8.516667 |
0 |
|
Galaxy Server administration |
Deploying a Beacon v1 in Galaxy |
https://training.galaxyproject.org//topics/admin/tutorials/beacon/tutorial.html |
|
|
2023-04-16 |
2025-11-22 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
188 |
206 |
17.300000 |
0 |
|
Galaxy Server administration |
Automation with Jenkins |
https://training.galaxyproject.org//topics/admin/tutorials/jenkins/tutorial.html |
|
|
2019-08-06 |
2022-10-18 |
10 |
True |
False |
False |
False |
|
|
|
0 |
|
8390 |
16543 |
1.333333 |
0 |
|
Galaxy Server administration |
How I learned to stop worrying and love the systemd |
https://training.galaxyproject.org//topics/admin/tutorials/stop-worrying-love-systemd/tutorial.html |
|
|
2022-07-06 |
2023-09-28 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
731 |
834 |
4.000000 |
0 |
|
Galaxy Server administration |
Use Apptainer containers for running Galaxy jobs |
https://training.galaxyproject.org//topics/admin/tutorials/apptainer/tutorial.html |
|
|
2021-01-08 |
2025-11-24 |
19 |
True |
False |
True |
False |
|
|
|
0 |
|
1215 |
1531 |
9.600000 |
0 |
|
Galaxy Server administration |
Galaxy Installation on Kubernetes |
https://training.galaxyproject.org//topics/admin/tutorials/k8s-deploying-galaxy/tutorial.html |
|
|
2019-07-02 |
2024-06-30 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
1695 |
2755 |
5.250000 |
0 |
|
Galaxy Server administration |
Managing Galaxy on Kubernetes |
https://training.galaxyproject.org//topics/admin/tutorials/k8s-managing-galaxy/tutorial.html |
|
|
2019-07-02 |
2024-12-19 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
727 |
1041 |
7.000000 |
0 |
|
Galaxy Server administration |
Galaxy usage on SURF Research Cloud |
https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-galaxy/tutorial.html |
Informatics, Data management |
|
2024-12-18 |
2025-08-05 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
141 |
161 |
4.383333 |
0 |
|
Galaxy Server administration |
Pulsar usage on SURF Research Cloud |
https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-pulsar/tutorial.html |
Informatics, Data management |
|
2024-12-18 |
2024-12-19 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
126 |
135 |
3.933333 |
0 |
|
Galaxy Server administration |
Deploying Wireguard for private mesh networking |
https://training.galaxyproject.org//topics/admin/tutorials/wireguard/tutorial.html |
|
|
2022-09-21 |
2024-12-19 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
1183 |
1338 |
1.100000 |
0 |
|
Galaxy Server administration |
Deploying Tailscale/Headscale for private mesh networking |
https://training.galaxyproject.org//topics/admin/tutorials/wireguard-headscale/tutorial.html |
Data security, Software engineering |
|
2022-09-21 |
2024-12-19 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
2500 |
3193 |
1.100000 |
0 |
|
Galaxy Server administration |
Deploying a compute cluster in OpenStack via Terraform |
https://training.galaxyproject.org//topics/admin/tutorials/terraform/tutorial.html |
|
|
2018-10-27 |
2024-12-19 |
15 |
True |
True |
False |
False |
|
|
|
0 |
|
3826421 |
9065607 |
3.233333 |
0 |
|
Image analysis using Deep Learning |
Contribute to the BioImage.IO models |
https://training.galaxyproject.org//topics/ai4life/tutorials/contribute-materials/slides.html |
|
|
2023-05-18 |
2023-05-24 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2444442 |
4927136 |
1.800000 |
0 |
|
Image analysis using Deep Learning |
Welcome to the BioImage Model Zoo |
https://training.galaxyproject.org//topics/ai4life/tutorials/welcome-bioimageio/slides.html |
|
|
2023-05-11 |
2023-05-18 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2459346 |
4959512 |
1.800000 |
0 |
|
Image analysis using Deep Learning |
BioImage Model Zoo: Advanced models in one-click |
https://training.galaxyproject.org//topics/ai4life/tutorials/getting-started/slides.html |
|
|
2023-04-18 |
2023-05-24 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2506563 |
5062908 |
1.816667 |
0 |
|
Assembly |
An Introduction to Genome Assembly |
https://training.galaxyproject.org//topics/assembly/tutorials/general-introduction/tutorial.html |
|
De-novo assembly, Statistical calculation, Visualisation, Sequence assembly validation, Validation, Sequence composition calculation, Formatting, Sequencing quality control |
2017-05-23 |
2026-01-23 |
30 |
True |
True |
True |
True |
fastq_paired_end_interlacer, velveth, multiqc, fastqc, quast, velvetg |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
0 |
|
3849260 |
9098318 |
8.950000 |
0 |
|
Assembly |
Making sense of a newly assembled genome |
https://training.galaxyproject.org//topics/assembly/tutorials/ecoli_comparison/tutorial.html |
Sequence assembly, Genomics, Microbiology |
Sequence visualisation, Read mapping, Mapping, Sequence alignment, Genome visualisation |
2018-06-14 |
2026-04-13 |
30 |
True |
False |
False |
True |
jbrowse, cat1, collapse_dataset, tp_replace_in_column, random_lines1, tp_replace_in_line, join1, fasta_filter_by_length, circos_interval_to_tiles, tp_sort_header_tool, Filter1, fasta_compute_length, addValue, tp_cat, bedtools_intersectbed, circos, tp_sed_tool, datamash_ops, tp_grep_tool, mergeCols1, Cut1, bedtools_sortbed, upload1, Grep1, circos_aln_to_links, lastz_wrapper_2, bedtools_complementbed |
|
|
0 |
|
6969 |
13261 |
8.116667 |
0 |
|
Assembly |
Unicycler Assembly |
https://training.galaxyproject.org//topics/assembly/tutorials/unicycler-assembly/tutorial.html |
Sequence assembly, Genomics, Microbiology |
Statistical calculation, Genome assembly, Coding region prediction, Visualisation, Sequence assembly validation, Validation, Gene prediction, Sequence composition calculation, Aggregation, Genome annotation, Sequencing quality control |
2017-10-11 |
2026-01-23 |
25 |
True |
True |
False |
True |
multiqc, fastqc, unicycler, quast, prokka |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3823772 |
9058168 |
7.083333 |
0 |
|
Assembly |
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step |
https://training.galaxyproject.org//topics/assembly/tutorials/vgp_genome_assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
De-novo assembly, k-mer counting, Primer removal, Genome assembly, Scaffolding, Pairwise sequence alignment, Mapping, Visualisation, Sequence assembly validation, Read binning, Data handling, Phasing, Read pre-processing, Sequence alignment, Sequence trimming |
2021-06-04 |
2026-04-13 |
59 |
True |
False |
True |
True |
bellerophon, tp_find_and_replace, sort1, salsa, genomescope, gfastats, cat1, collapse_dataset, minimap2, bedtools_bamtobed, bwa_mem2, purge_dups, yahs, gfa_to_fa, quast, busco, cutadapt, tp_cut_tool, pretext_snapshot, tp_grep_tool, hifiasm, meryl, merqury, Add_a_column1, pretext_map, Convert characters1, bionano_scaffold, collection_column_join |
|
UseGalaxy.cz |
0 |
|
19023 |
27728 |
3.200000 |
0 |
|
Assembly |
ERGA post-assembly QC |
https://training.galaxyproject.org//topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Sequence alignment analysis, k-mer counting, De-novo assembly, Sequence assembly visualisation, Phasing, Genome assembly, Scaffolding, Pairwise sequence alignment, Visualisation, Sequence assembly validation, Data parsing, Data handling, Data deposition, Genotyping, Sequence alignment, Sequence trimming |
2023-06-23 |
2025-06-04 |
8 |
True |
False |
True |
True |
bellerophon, tp_find_and_replace, genomescope, gfastats, smudgeplot, samtools_stats, collapse_dataset, minimap2, CONVERTER_gz_to_uncompressed, blobtoolkit, busco, interactive_tool_blobtoolkit, pretext_snapshot, __EXTRACT_DATASET__, bg_diamond, meryl, bandage_image, merqury, pretext_map, bwa_mem2 |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.org (Main) |
0 |
|
2474 |
3164 |
8.466667 |
0 |
|
Assembly |
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data |
https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-illumina/tutorial.html |
Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology |
Sequence assembly visualisation, Read mapping, Genome assembly, Visualisation, Sequence assembly validation, Sequence contamination filtering, Sequencing quality control |
2021-03-24 |
2026-01-05 |
18 |
True |
False |
True |
True |
upload1, shovill, bandage_image, fastp, bandage_info, quast, falco |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
11568 |
17594 |
9.533333 |
0 |
|
Assembly |
Genome assembly using PacBio data |
https://training.galaxyproject.org//topics/assembly/tutorials/hifi-assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Cross-assembly, De-novo assembly, Genome assembly, Mapping assembly, Visualisation, Sequence assembly validation |
2021-11-29 |
2025-06-04 |
2 |
True |
False |
False |
True |
flye, gfa_to_fa, fasta-stats, quast, hifiasm, busco |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
1715 |
2062 |
5.783333 |
0 |
|
Assembly |
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data |
https://training.galaxyproject.org//topics/assembly/tutorials/vgp_workflow_training/tutorial.html |
Sequence assembly, Chromosome conformation capture |
Visualisation, Sequence assembly validation |
2022-04-06 |
2026-05-18 |
27 |
True |
False |
True |
False |
quast |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
|
0 |
|
4643 |
6161 |
6.850000 |
0 |
|
Assembly |
Hybrid genome assembly - Nanopore and Illumina |
https://training.galaxyproject.org//topics/assembly/tutorials/hybrid_denovo_assembly/tutorial.html |
|
De-novo assembly, Read mapping, Genome assembly, Visualisation, Generation, Sequence assembly validation, Analysis, Validation, Genome indexing, Read alignment, Cross-assembly, Aggregation, Mapping assembly, Sequence alignment, Sequence assembly, Sequencing quality control |
2025-11-03 |
2025-11-06 |
2 |
True |
False |
False |
True |
pilon, multiqc, flye, unicycler, quast, busco, bwa_mem |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.no |
0 |
|
1362 |
1666 |
4.666667 |
0 |
|
Assembly |
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-with-preprocessing/tutorial.html |
|
Sequence file editing, Scatter plot plotting, Sequence assembly visualisation, Read mapping, Genome assembly, Pairwise sequence alignment, Data handling, Validation, Box-Whisker plot plotting, Aggregation, Sequence contamination filtering, Sequencing quality control |
2020-04-21 |
2025-05-15 |
14 |
True |
True |
True |
True |
bandage_image, nanoplot, multiqc, __ZIP_COLLECTION__, bandage_info, fastp, samtools_stats, bowtie2, samtools_fastx, samtools_view, fasterq_dump, unicycler, seqtk_sample, collapse_dataset, minimap2, fasta_filter_by_length |
UseGalaxy.org.au, UseGalaxy.eu |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
3816897 |
9046233 |
10.650000 |
0 |
|
Assembly |
Assembly of the mitochondrial genome from PacBio HiFi reads |
https://training.galaxyproject.org//topics/assembly/tutorials/mitochondrion-assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity, Mitochondria |
|
2024-09-03 |
2026-04-22 |
5 |
True |
False |
True |
True |
compress_file, mitohifi |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
1238 |
1480 |
10.966667 |
0 |
|
Assembly |
Genome Assembly Quality Control |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-quality-control/tutorial.html |
Biodiversity, Sequence assembly, Data quality management |
k-mer counting, De-novo assembly, Phasing, Genome assembly, Scaffolding, Visualisation, Sequence assembly validation |
2022-08-26 |
2025-06-04 |
6 |
True |
True |
False |
True |
merqury, quast, chromeister, busco, meryl |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr |
UseGalaxy.cz |
0 |
|
2910391 |
6082552 |
10.283333 |
0 |
|
Assembly |
Assembly of metagenomic sequencing data |
https://training.galaxyproject.org//topics/assembly/tutorials/metagenomics-assembly/tutorial.html |
Metagenomics, Sequence assembly |
Sequence alignment analysis, Statistical calculation, Primer removal, Genome assembly, Visualisation, Local alignment, Sequence composition calculation, Formatting, Variant calling, Sequence file editing, Sequence assembly visualisation, Read mapping, Sequence assembly validation, Data handling, Read pre-processing, Sequence contamination filtering, Sequence trimming, Sequencing quality control |
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
metaspades, collection_column_join, bandage_image, filter_tabular, coverm_contig, megahit_contig2fastg, bamtools, fastqc, bandage_info, megahit, bowtie2, tp_cat, quast, ngsutils_bam_filter, seqtk_subseq, random_lines1, cutadapt, bg_uniq |
|
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
0 |
|
6 |
7 |
11.666667 |
0 |
|
Assembly |
De Bruijn Graph Assembly |
https://training.galaxyproject.org//topics/assembly/tutorials/debruijn-graph-assembly/tutorial.html |
|
Optimisation and refinement, De-novo assembly, Sequence assembly visualisation, Genome assembly, Formatting, Sequence assembly |
2017-05-24 |
2026-01-07 |
26 |
True |
True |
False |
True |
bandage_image, velveth, spades, velvetoptimiser, fasta-stats, velvetg |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.cz |
0 |
|
3817254 |
9046319 |
10.633333 |
0 |
|
Assembly |
Large genome assembly and polishing |
https://training.galaxyproject.org//topics/assembly/tutorials/largegenome/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Statistical calculation, Genome assembly, Visualisation, Box-Whisker plot plotting, Sequence composition calculation, Base-calling, Variant calling, Sequence assembly, Scatter plot plotting, De-novo assembly, Sequence assembly visualisation, Pairwise sequence alignment, Sequence assembly validation, Validation, Cross-assembly, Mapping assembly, Sequence contamination filtering, Sequencing quality control |
2023-03-06 |
2026-01-23 |
15 |
True |
False |
True |
True |
medaka_consensus_pipeline, bandage_image, nanoplot, multiqc, genomescope, fastqc, flye, fastp, minimap2, racon, fasta-stats, quast, barchart_gnuplot, busco, meryl |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
8398 |
10805 |
5.333333 |
0 |
|
Assembly |
Chloroplast genome assembly |
https://training.galaxyproject.org//topics/assembly/tutorials/chloroplast-assembly/tutorial.html |
|
Scatter plot plotting, De-novo assembly, Sequence assembly visualisation, Read mapping, Genome assembly, Coding region prediction, Generation, Genome visualisation, Analysis, Gene prediction, Box-Whisker plot plotting, Read alignment, Cross-assembly, Genome indexing, Mapping assembly, Sequence alignment, Genome annotation, Sequence assembly |
2020-12-04 |
2026-01-23 |
22 |
True |
False |
True |
True |
upload1, pilon, bandage_image, nanoplot, jbrowse, flye, bandage_info, fasta-stats, prokka, bwa_mem |
UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
8718 |
13443 |
7.933333 |
0 |
|
Assembly |
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) |
https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-nanopore/tutorial.html |
Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Antimicrobial resistance |
Scatter plot plotting, De-novo assembly, Sequence assembly visualisation, Statistical calculation, Genome assembly, Sequencing error detection, Read mapping, Visualisation, Filtering, Sequence assembly validation, Sequence alignment, Box-Whisker plot plotting, Sequence composition calculation, Cross-assembly, Mapping assembly, Sequence contamination filtering, Sequencing quality control |
2021-03-24 |
2026-01-05 |
16 |
True |
False |
False |
True |
upload1, bandage_image, nanoplot, porechop, filtlong, fastqc, flye, __EXTRACT_DATASET__, fastp, polypolish, quast, __FLATTEN__, CONVERTER_bz2_to_uncompressed, bwa_mem2 |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
11438 |
16929 |
7.583333 |
0 |
|
Assembly |
Decontamination of a genome assembly |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-decontamination/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Data handling, Taxonomic classification |
2024-09-04 |
2025-06-04 |
5 |
True |
False |
True |
True |
tp_sed_tool, kraken2, ncbi_dustmasker_wrapper, gfastats, Filter1, parse_mito_blast, tp_cat, Cut1, ncbi_blastn_wrapper |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz |
0 |
|
2161 |
2615 |
8.666667 |
0 |
|
Assembly |
Deeper look into Genome Assembly algorithms |
https://training.galaxyproject.org//topics/assembly/tutorials/algorithms-introduction/slides.html |
|
|
2021-01-12 |
2021-01-12 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3789481 |
8966758 |
2.083333 |
0 |
|
Assembly |
An introduction to get started in genome assembly and annotation |
https://training.galaxyproject.org//topics/assembly/tutorials/get-started-genome-assembly/slides.html |
|
|
2021-11-30 |
2023-10-23 |
7 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3328689 |
7410240 |
2.000000 |
0 |
|
Assembly |
Genome assembly and assembly QC - Introduction short version |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly_and_qc_short/slides.html |
|
|
2025-04-22 |
2026-02-12 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1357463 |
2326314 |
1.250000 |
0 |
|
Climate |
Nitrate DMQC for autonomous platforms such as Argo floats |
https://training.galaxyproject.org//topics/climate/tutorials/ocean_qcv_analysis/tutorial.html |
|
|
2025-08-08 |
2025-09-16 |
3 |
True |
False |
False |
True |
tool_odv_history, interactive_tool_odv, harmonize_insitu_to_netcdf, tool_odv, tool_biogeochemical_calibration |
UseGalaxy.eu |
|
0 |
|
109 |
122 |
12.133333 |
0 |
|
Climate |
Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools |
https://training.galaxyproject.org//topics/climate/tutorials/pangeo/tutorial.html |
|
Visualisation |
2022-02-18 |
2025-05-10 |
6 |
True |
True |
True |
True |
ggplot2_point, xarray_metadata_info, __MERGE_COLLECTION__, __EXTRACT_DATASET__, xarray_mapplot, xarray_coords_info, xarray_select, graphicsmagick_image_montage, xarray_netcdf2netcdf, regexColumn1, climate_stripes |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
3203519 |
7010421 |
12.450000 |
0 |
|
Climate |
Pangeo Notebook in Galaxy - Introduction to Xarray |
https://training.galaxyproject.org//topics/climate/tutorials/pangeo-notebook/tutorial.html |
|
|
2022-02-18 |
2025-05-10 |
11 |
True |
True |
True |
True |
interactive_tool_pangeo_notebook |
UseGalaxy.eu |
|
0 |
|
3203818 |
7011027 |
9.750000 |
0 |
|
Climate |
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) |
https://training.galaxyproject.org//topics/climate/tutorials/fates/tutorial.html |
|
Visualisation |
2020-10-25 |
2025-05-10 |
18 |
True |
True |
True |
True |
tp_find_and_replace, ggplot2_point, interactive_tool_panoply, xarray_metadata_info, __EXTRACT_DATASET__, xarray_select, ctsm_fates |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
3811817 |
9037728 |
8.150000 |
0 |
|
Climate |
Ocean's variables study |
https://training.galaxyproject.org//topics/climate/tutorials/ocean-variables/tutorial.html |
|
|
2023-11-29 |
2025-05-10 |
5 |
True |
False |
False |
True |
interactive_tool_odv, divand_full_analysis, interactive_tool_divand |
UseGalaxy.eu |
|
0 |
|
283 |
330 |
12.266667 |
0 |
|
Climate |
Getting your hands-on climate data |
https://training.galaxyproject.org//topics/climate/tutorials/climate-101/tutorial.html |
|
Visualisation |
2020-04-30 |
2026-05-15 |
15 |
True |
False |
False |
True |
Grep1, datamash_ops, interactive_tool_panoply, ggplot2_point, tp_awk_tool, psy_maps, cds_essential_variability, climate_stripes |
UseGalaxy.eu |
|
0 |
|
1193 |
1625 |
7.083333 |
0 |
|
Climate |
Analyse Argo data |
https://training.galaxyproject.org//topics/climate/tutorials/argo_pangeo/tutorial.html |
|
|
2024-03-24 |
2025-05-10 |
2 |
True |
False |
False |
True |
xarray_metadata_info, interactive_tool_odv, timeseries_extraction, xarray_coords_info, argo_getdata |
UseGalaxy.eu |
|
0 |
|
389 |
451 |
9.250000 |
0 |
|
Climate |
Sentinel 5P data visualisation |
https://training.galaxyproject.org//topics/climate/tutorials/sentinel5_data/tutorial.html |
|
|
2024-01-26 |
2025-05-10 |
2 |
True |
False |
False |
True |
interactive_tool_copernicus_notebook, interactive_tool_copernicus, interactive_tool_panoply |
|
|
0 |
|
387 |
435 |
5.466667 |
0 |
|
Climate |
Introduction to climate data |
https://training.galaxyproject.org//topics/climate/tutorials/introduction/slides.html |
|
|
2020-10-11 |
2025-05-10 |
2 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810241 |
9035297 |
2.100000 |
0 |
|
Climate |
Visualize Climate data with Panoply netCDF viewer |
https://training.galaxyproject.org//topics/climate/tutorials/panoply/tutorial.html |
|
|
2020-03-05 |
2025-05-10 |
18 |
True |
False |
False |
False |
interactive_tool_panoply |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
6799 |
10842 |
1.733333 |
0 |
|
Climate |
Collaboration with JupyterGIS |
https://training.galaxyproject.org//topics/climate/tutorials/jupytergis_collaboration/tutorial.html |
|
|
2025-04-03 |
2025-05-10 |
4 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
252 |
302 |
8.650000 |
0 |
|
Climate |
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab |
https://training.galaxyproject.org//topics/climate/tutorials/fates-jupyterlab/tutorial.html |
|
|
2020-10-25 |
2025-05-10 |
16 |
True |
False |
False |
False |
interactive_tool_jupyter_notebook |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
604 |
1016 |
8.866667 |
0 |
|
Climate |
Ocean Data View (ODV) |
https://training.galaxyproject.org//topics/climate/tutorials/ocean-data-view/tutorial.html |
|
|
2023-11-27 |
2025-05-10 |
2 |
True |
False |
False |
False |
interactive_tool_odv |
UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
539 |
641 |
4.800000 |
0 |
|
Climate |
Getting your hands-on earth data |
https://training.galaxyproject.org//topics/climate/tutorials/earth_system/tutorial.html |
|
|
2024-10-04 |
2025-05-10 |
2 |
True |
False |
False |
False |
argo_getdata, obis_data, c3s, spocc_occ |
UseGalaxy.eu |
UseGalaxy.be |
0 |
|
186 |
229 |
10.716667 |
0 |
|
Galaxy Community Building |
Creation of the labs in the different Galaxy instances for your community |
https://training.galaxyproject.org//topics/community/tutorials/community-lab/tutorial.html |
|
|
2025-10-04 |
2026-04-30 |
6 |
True |
False |
False |
False |
|
|
|
0 |
|
95 |
116 |
10.883333 |
0 |
|
Galaxy Community Building |
Creating community content |
https://training.galaxyproject.org//topics/community/tutorials/community_content/tutorial.html |
|
|
2024-12-20 |
2024-12-20 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
148 |
165 |
7.883333 |
0 |
|
Galaxy Community Building |
Creation of resources listing all the tools and their metadata relevant to your community |
https://training.galaxyproject.org//topics/community/tutorials/community-tool-table/tutorial.html |
|
|
2024-03-13 |
2026-04-30 |
6 |
True |
False |
False |
False |
|
|
|
0 |
|
149 |
174 |
10.233333 |
0 |
|
Galaxy Community Building |
What's a Special Interest Group? |
https://training.galaxyproject.org//topics/community/tutorials/sig_define/tutorial.html |
|
|
2024-07-08 |
2024-12-20 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
170 |
211 |
12.250000 |
0 |
|
Galaxy Community Building |
Creation of resources listing Galaxy workflow for your community |
https://training.galaxyproject.org//topics/community/tutorials/community-workflow-table/tutorial.html |
|
|
2025-09-17 |
2025-11-27 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
44 |
46 |
5.716667 |
0 |
|
Galaxy Community Building |
Make your tools available on your subdomain |
https://training.galaxyproject.org//topics/community/tutorials/tools_subdomains/tutorial.html |
|
|
2024-12-03 |
2024-12-20 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
76 |
91 |
10.450000 |
0 |
|
Galaxy Community Building |
Creation of a Galaxy tutorial table for your community |
https://training.galaxyproject.org//topics/community/tutorials/community-tutorial-table/tutorial.html |
|
|
2025-09-17 |
2025-10-28 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
57 |
61 |
11.916667 |
0 |
|
Galaxy Community Building |
Creating a Special Interest Group |
https://training.galaxyproject.org//topics/community/tutorials/sig_create/tutorial.html |
|
|
2024-07-08 |
2024-12-20 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
218 |
233 |
9.550000 |
0 |
|
Computational chemistry |
Protein target prediction of a bioactive ligand with Align-it and ePharmaLib |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/zauberkugel/tutorial.html |
|
|
2022-02-15 |
2024-06-14 |
10 |
True |
False |
False |
True |
split_file_to_collection, sort1, ctb_alignit, rdconf, openbabel_addh, tp_cat |
UseGalaxy.cz |
|
0 |
|
1432 |
2015 |
7.400000 |
0 |
|
Computational chemistry |
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/covid19-docking/tutorial.html |
|
|
2020-03-27 |
2023-11-09 |
10 |
True |
False |
False |
True |
sucos_max_score, split_file_to_collection, rxdock_rbdock, rdock_rbdock, enumerate_charges, rdock_rbcavity, xchem_pose_scoring, collapse_dataset, xchem_transfs_scoring, rxdock_rbcavity, openbabel_compound_convert, ctb_frankenstein_ligand |
|
|
0 |
|
3326 |
5391 |
8.266667 |
0 |
|
Computational chemistry |
Data management in Medicinal Chemistry |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/med-chem-data/tutorial.html |
|
|
2024-01-08 |
2024-09-13 |
4 |
True |
False |
True |
True |
ctb_silicos_qed, openbabel_svg_depiction, md_converter, get_pdb, ctb_im_rxn_maker, openbabel_compound_convert, chembl |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.no |
0 |
|
610 |
718 |
9.050000 |
0 |
|
Computational chemistry |
Analysis of molecular dynamics simulations |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/analysis-md-simulations/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
13 |
True |
False |
False |
True |
mdanalysis_rdf, bio3d_rmsf, bio3d_rmsd, mdanalysis_cosine_analysis, mdanalysis_ramachandran_plot, mdanalysis_dihedral, bio3d_pca, mdanalysis_distance |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no |
0 |
|
33461 |
58730 |
2.350000 |
0 |
|
Computational chemistry |
High Throughput Molecular Dynamics and Analysis |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/htmd-analysis/tutorial.html |
|
|
2020-05-20 |
2025-04-08 |
19 |
True |
False |
True |
True |
gmx_energy, vmd_hbonds, bio3d_rmsf, gmx_em, bio3d_rmsd, bio3d_pca_visualize, gmx_merge_topology_files, gmx_setup, gmx_sim, mdanalysis_cosine_analysis, ambertools_acpype, tp_grep_tool, gmx_editconf, md_converter, get_pdb, gmx_solvate, bio3d_pca, openbabel_compound_convert |
UseGalaxy.org.au, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
11698 |
20111 |
4.866667 |
0 |
|
Computational chemistry |
Running molecular dynamics simulations using GROMACS |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-gromacs/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
15 |
True |
False |
False |
True |
gmx_em, gmx_setup, gmx_sim, tp_grep_tool, gmx_editconf, get_pdb, gmx_solvate |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
28791 |
50210 |
2.433333 |
0 |
|
Computational chemistry |
Running molecular dynamics simulations using NAMD |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-namd/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
9 |
True |
False |
False |
True |
namd_nvt, minimizer, setup, namd_npt |
|
|
0 |
|
4421 |
7288 |
3.850000 |
0 |
|
Computational chemistry |
Protein-ligand docking |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/cheminformatics/tutorial.html |
|
|
2019-10-19 |
2025-12-04 |
17 |
True |
False |
False |
True |
ctb_change_title, ctb_np-likeness-calculator, tp_find_and_replace, ctb_remDuplicates, ctb_remIons, sdf_to_tab, collapse_dataset, get_pdb, chembl, fpocket, openbabel_svg_depiction, tp_cat, openbabel_compound_convert, tp_grep_tool, prepare_receptor, ctb_filter, ctb_chemfp_butina_clustering, ctb_chemfp_mol2fps, docking, ctb_online_data_fetch, ctb_chemfp_nxn_clustering, ctb_compound_convert, prepare_box, ctb_obgrep |
|
UseGalaxy.org (Main) |
0 |
|
21027 |
35346 |
3.200000 |
0 |
|
Computational chemistry |
Setting up molecular systems |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/setting-up-molecular-systems/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
14 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1947 |
2600 |
9.750000 |
0 |
|
Contributing to the Galaxy Training Material |
Contributing to the Galaxy Training Network with GitHub |
https://training.galaxyproject.org//topics/contributing/tutorials/github-contribution/tutorial.html |
|
|
2017-06-12 |
2025-03-14 |
2 |
True |
True |
False |
False |
|
|
|
0 |
|
3810452 |
9035507 |
13.350000 |
0 |
|
Contributing to the Galaxy Training Material |
Overview of the Galaxy Training Material |
https://training.galaxyproject.org//topics/contributing/tutorials/introduction/slides.html |
|
|
2017-06-25 |
2025-03-14 |
2 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035301 |
2.100000 |
0 |
|
Contributing to the Galaxy Training Material |
Contributing with GitHub via its interface |
https://training.galaxyproject.org//topics/contributing/tutorials/github-interface-contribution/tutorial.html |
|
|
2018-06-12 |
2023-11-09 |
17 |
True |
False |
False |
False |
|
|
|
0 |
|
717 |
1069 |
12.966667 |
0 |
|
Contributing to the Galaxy Training Material |
Updating diffs in admin training |
https://training.galaxyproject.org//topics/contributing/tutorials/admin-knitting/tutorial.html |
|
|
2021-06-07 |
2023-11-23 |
9 |
True |
False |
False |
False |
|
|
|
0 |
|
94 |
136 |
14.150000 |
0 |
|
Contributing to the Galaxy Training Material |
Preview the GTN website as you edit your training material |
https://training.galaxyproject.org//topics/contributing/tutorials/rendering_gtn/tutorial.html |
|
|
2025-03-14 |
2026-02-04 |
4 |
True |
False |
True |
False |
|
|
|
0 |
|
591 |
790 |
11.750000 |
0 |
|
Contributing to the Galaxy Training Material |
Principles of learning and how they apply to training and teaching |
https://training.galaxyproject.org//topics/contributing/tutorials/learning-principles/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
17 |
True |
False |
False |
False |
|
|
|
0 |
|
5710 |
6848 |
1.566667 |
0 |
|
Contributing to the Galaxy Training Material |
Adding Quizzes to your Tutorial |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-quiz/tutorial.html |
|
|
2022-05-19 |
2022-10-18 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
138 |
154 |
12.183333 |
0 |
|
Contributing to the Galaxy Training Material |
GTN Metadata |
https://training.galaxyproject.org//topics/contributing/tutorials/schemas/tutorial.html |
|
|
2022-06-02 |
2024-10-15 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
297 |
384 |
14.216667 |
0 |
|
Contributing to the Galaxy Training Material |
Adding auto-generated video to your slides |
https://training.galaxyproject.org//topics/contributing/tutorials/slides-with-video/tutorial.html |
|
|
2020-10-20 |
2023-11-09 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
301 |
384 |
14.950000 |
0 |
|
Contributing to the Galaxy Training Material |
Tools, Data, and Workflows for tutorials |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-technical/tutorial.html |
|
|
2017-06-25 |
2025-04-08 |
26 |
True |
False |
False |
False |
|
|
|
0 |
|
601 |
793 |
13.916667 |
0 |
|
Contributing to the Galaxy Training Material |
Teaching Python |
https://training.galaxyproject.org//topics/contributing/tutorials/python/tutorial.html |
|
|
2022-10-19 |
2023-11-23 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
389 |
705 |
8.716667 |
0 |
|
Contributing to the Galaxy Training Material |
Design and plan session, course, materials |
https://training.galaxyproject.org//topics/contributing/tutorials/design/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
697 |
916 |
9.816667 |
0 |
|
Contributing to the Galaxy Training Material |
Generating PDF artefacts of the website |
https://training.galaxyproject.org//topics/contributing/tutorials/generating-pdf/tutorial.html |
|
|
2018-06-04 |
2023-11-09 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
98 |
116 |
20.550000 |
0 |
|
Contributing to the Galaxy Training Material |
FAIR-by-Design methodology |
https://training.galaxyproject.org//topics/contributing/tutorials/fair-by-design/tutorial.html |
|
|
2024-10-17 |
2024-10-17 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
85 |
94 |
10.633333 |
0 |
|
Contributing to the Galaxy Training Material |
Including a new topic |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-topic/tutorial.html |
|
|
2018-06-04 |
2025-12-01 |
33 |
True |
False |
False |
False |
|
|
|
0 |
|
1314 |
1774 |
3.683333 |
0 |
|
Contributing to the Galaxy Training Material |
Creating Interactive Galaxy Tours |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-tours/tutorial.html |
|
|
2017-06-25 |
2025-04-08 |
13 |
True |
False |
False |
False |
|
|
|
0 |
|
339 |
497 |
13.183333 |
0 |
|
Contributing to the Galaxy Training Material |
Creating a new tutorial |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial/tutorial.html |
|
Data handling, Sequence file editing, Read mapping, Primer removal, Read pre-processing, Sequence trimming |
2018-06-20 |
2025-11-20 |
33 |
True |
False |
True |
True |
tp_sed_tool, tp_cut_tool, tp_sorted_uniq, Filter1, bowtie2, fastq_to_tabular, tp_cat, seqtk_subseq, Cut1, c3s, cutadapt, random_lines1, bam_to_sam |
|
|
0 |
|
1972 |
2849 |
12.983333 |
0 |
|
Contributing to the Galaxy Training Material |
FAIR Galaxy Training Material |
https://training.galaxyproject.org//topics/contributing/tutorials/fair-gtn/tutorial.html |
|
|
2026-05-21 |
2026-05-21 |
0 |
True |
False |
False |
False |
|
|
|
0 |
|
0 |
0 |
0.000000 |
0 |
|
Contributing to the Galaxy Training Material |
Single Cell Publication - Data Plotting |
https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-plot/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
81 |
81 |
13.733333 |
0 |
|
Contributing to the Galaxy Training Material |
Single Cell Publication - Data Analysis |
https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-data/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
112 |
116 |
9.900000 |
0 |
|
Contributing to the Galaxy Training Material |
Creating content in Markdown |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-content/tutorial.html |
|
Validation, Sequencing quality control |
2017-06-25 |
2025-04-08 |
85 |
True |
False |
False |
False |
upload1, multiqc |
|
|
0 |
|
3910 |
9960 |
7.150000 |
0 |
|
Contributing to the Galaxy Training Material |
Creating Slides |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-slides/slides.html |
|
|
2018-06-13 |
2024-11-08 |
17 |
False |
True |
True |
False |
|
|
|
0 |
|
3810266 |
9035307 |
2.100000 |
0 |
|
Contributing to the Galaxy Training Material |
Updating tool versions in a tutorial |
https://training.galaxyproject.org//topics/contributing/tutorials/updating_tutorial/tutorial.html |
|
|
2024-11-29 |
2024-11-29 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
165 |
187 |
14.016667 |
0 |
|
Variant Analysis |
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2-variant-discovery/tutorial.html |
|
Variant classification, Methylation analysis, Variant calling, Tree-based sequence alignment |
2021-06-30 |
2025-03-28 |
18 |
True |
False |
True |
False |
upload1, datamash_ops, Filter1, nextclade, fasta_regex_finder, pangolin |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
7708 |
13640 |
7.450000 |
0 |
|
Variant Analysis |
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2/tutorial.html |
|
Read mapping, Sequence alignment, Generation, Data handling, Validation, SNP detection, Genome indexing, Sequence contamination filtering, Formatting, Sequencing quality control |
2020-06-24 |
2024-06-14 |
16 |
True |
False |
True |
True |
Grep1, lofreq_indelqual, lofreq_viterbi, tp_cut_tool, multiqc, picard_MarkDuplicates, Filter1, fastp, samtools_stats, fasterq_dump, lofreq_call, snpeff_sars_cov_2, bwa_mem, snpSift_extractFields |
UseGalaxy.eu, UseGalaxy.org (Main) |
MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
14168 |
21174 |
6.466667 |
0 |
|
Using Galaxy and Managing your Data |
Submitting sequence data to ENA |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-data-to-ena/tutorial.html |
|
|
2021-08-10 |
2024-12-11 |
10 |
True |
True |
False |
True |
ena_upload, ena_consensus_submit |
|
|
0 |
|
3489587 |
7944954 |
6.666667 |
0 |
|
Using Galaxy and Managing your Data |
Automating Galaxy workflows using the command line |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-automation/tutorial.html |
|
Validation, Read mapping, Visualisation, Variant classification, Sequence contamination filtering, Sequencing quality control, Tree-based sequence alignment |
2021-06-08 |
2025-12-18 |
11 |
True |
False |
True |
True |
snpSift_filter, bcftools_consensus, multiqc, fastp, collapse_dataset, falco, compose_text_param, pangolin |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
3175 |
3956 |
8.683333 |
0 |
|
Sequence analysis |
Removal of human reads from SARS-CoV-2 sequencing data |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/human-reads-removal/tutorial.html |
|
Data handling, Sequence file editing, Read mapping, Sequence alignment, Generation, Genome indexing |
2021-08-04 |
2023-11-09 |
5 |
True |
False |
False |
True |
Grep1, __ZIP_COLLECTION__, __UNZIP_COLLECTION__, trimmomatic, samtools_fastx, seqtk_subseq, tp_replace_in_line, bwa_mem |
UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
4251 |
5984 |
9.250000 |
0 |
|
Using Galaxy and Managing your Data |
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/ncbi-sarf/tutorial.html |
|
Data handling, SNP detection |
2021-05-31 |
2024-06-14 |
12 |
True |
True |
True |
False |
snpeff_sars_cov_2, fastq_dump, query_tabular, fasterq_dump, tp_cat, jq, fastq_to_fasta_python |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
3591134 |
8281077 |
11.683333 |
0 |
|
Sequence analysis |
SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/sars-with-galaxy-on-anvil/tutorial.html |
|
Statistical calculation, Read mapping, Generation, Genome visualisation, Genome indexing, Sequence composition calculation, Sequence alignment, Sequencing quality control |
2023-07-10 |
2024-02-29 |
2 |
True |
False |
False |
False |
jbrowse, fastqc, bwa_mem |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
Galaxy@AuBi, Galaxy@Pasteur, GalaxyTrakr, MISSISSIPPI, UseGalaxy.cz |
0 |
|
1695 |
2163 |
11.033333 |
0 |
|
Foundations of Data Science |
Data Manipulation Olympics |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics/tutorial.html |
|
|
2026-05-21 |
2026-05-21 |
0 |
True |
False |
False |
True |
{{version_cut_columns}}, {{version_unique}}, Count1, {{version_cat}}, cat1, {{version_join}}, {{version_wc}}, regexColumn1, join1, {{version_sort}}, {{version_replace_text_column}}, tabular_to_csv, tp_split_on_column, tp_sort_header_tool, Filter1, {{version_cut_advanced}}, {{version_filter}}, tp_cat, wc_gnu, Grouping1, datamash_ops, Remove beginning1, {{version_split}}, Show beginning1, {{version_compute}}, Cut1, {{version_count}}, {{version_datamash}}, upload1, tp_sorted_uniq, {{version_replace_text_line}}, Add_a_column1, {{version_paste}}, {{version_select_first}}, {{version_remove_columns_by_header}}, {{version_remove_beginning}} |
|
|
0 |
|
1 |
1 |
0.000000 |
0 |
|
Foundations of Data Science |
Learning about one gene across biological resources and formats |
https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-gene/tutorial.html |
|
|
2023-09-07 |
2026-03-30 |
4 |
True |
True |
True |
False |
ncbi_blastp_wrapper |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@Pasteur, GalaxyTrakr, IPK Galaxy Blast Suite, MISSISSIPPI, PepSimili, PhagePromotor, UseGalaxy.no |
0 |
|
2241277 |
4484681 |
10.050000 |
0 |
|
Foundations of Data Science |
A (very) brief history of genomics |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture1/tutorial.html |
|
|
2024-01-09 |
2024-02-20 |
2 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2094926 |
4134301 |
28.250000 |
0 |
|
Foundations of Data Science |
Basics of using Git from the Command Line |
https://training.galaxyproject.org//topics/data-science/tutorials/git-cli/tutorial.html |
|
|
2022-06-16 |
2023-11-16 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
207 |
453 |
13.316667 |
0 |
|
Foundations of Data Science |
SQL with Python |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-python/tutorial.html |
|
|
2021-10-11 |
2023-11-16 |
7 |
True |
False |
False |
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https://training.galaxyproject.org//topics/data-science/tutorials/sql-advanced/tutorial.html |
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Foundations of Data Science |
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https://training.galaxyproject.org//topics/data-science/tutorials/sql-basic/tutorial.html |
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Foundations of Data Science |
One protein along the UniProt page |
https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-protein/tutorial.html |
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Foundations of Data Science |
Make & Snakemake |
https://training.galaxyproject.org//topics/data-science/tutorials/snakemake/tutorial.html |
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Foundations of Data Science |
Python - Math |
https://training.galaxyproject.org//topics/data-science/tutorials/python-math/tutorial.html |
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Foundations of Data Science |
Introduction to Python |
https://training.galaxyproject.org//topics/data-science/tutorials/python-basics/tutorial.html |
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2024-10-15 |
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Foundations of Data Science |
CLI Educational Game - Bashcrawl |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-bashcrawl/tutorial.html |
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2021-09-30 |
2024-10-15 |
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Foundations of Data Science |
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https://training.galaxyproject.org//topics/data-science/tutorials/python-warmup-stat-ml/tutorial.html |
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Foundations of Data Science |
SQL with R |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-r/tutorial.html |
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2023-11-16 |
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Foundations of Data Science |
SQL Educational Game - Murder Mystery |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-game/tutorial.html |
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2023-11-23 |
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Foundations of Data Science |
Advanced CLI in Galaxy |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-advanced/tutorial.html |
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2021-09-30 |
2024-10-15 |
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Foundations of Data Science |
Version Control with Git |
https://training.galaxyproject.org//topics/data-science/tutorials/bash-git/tutorial.html |
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2023-10-23 |
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interactive_tool_rstudio |
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Foundations of Data Science |
R basics in Galaxy |
https://training.galaxyproject.org//topics/data-science/tutorials/r-basics/tutorial.html |
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2024-06-14 |
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Foundations of Data Science |
CLI basics |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-basics/tutorial.html |
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2021-09-30 |
2024-10-15 |
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Foundations of Data Science |
Variant Calling Workflow |
https://training.galaxyproject.org//topics/data-science/tutorials/bash-variant-calling/tutorial.html |
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2022-07-07 |
2023-10-23 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Advanced R in Galaxy |
https://training.galaxyproject.org//topics/data-science/tutorials/r-advanced/tutorial.html |
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2019-12-09 |
2024-10-15 |
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interactive_tool_rstudio |
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Foundations of Data Science |
Advanced Python |
https://training.galaxyproject.org//topics/data-science/tutorials/python-advanced-np-pd/tutorial.html |
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2021-11-08 |
2024-10-15 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Functions |
https://training.galaxyproject.org//topics/data-science/tutorials/python-functions/tutorial.html |
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2022-04-25 |
2023-02-13 |
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Foundations of Data Science |
Introduction to sequencing with Python (part one) |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture2/tutorial.html |
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2024-01-23 |
2024-02-20 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Data visualisation Olympics - Visualization in R |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-viz-r/tutorial.html |
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2023-06-16 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Introduction to sequencing with Python (part two) |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture3/tutorial.html |
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2024-01-23 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Plotting in Python |
https://training.galaxyproject.org//topics/data-science/tutorials/python-plotting/tutorial.html |
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2021-11-08 |
2024-10-15 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
dplyr & tidyverse for data processing |
https://training.galaxyproject.org//topics/data-science/tutorials/r-dplyr/tutorial.html |
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2021-10-20 |
2024-10-15 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Basic Types & Type Conversion |
https://training.galaxyproject.org//topics/data-science/tutorials/python-types/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Data Manipulation Olympics - SQL |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-sql/tutorial.html |
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2023-06-16 |
2024-05-07 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Introduction to sequencing with Python (part three) |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture4/tutorial.html |
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2024-02-06 |
2024-02-20 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Data Manipulation Olympics - JQ |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-jq/tutorial.html |
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2023-06-16 |
2024-05-07 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Lists & Strings & Dictionaries |
https://training.galaxyproject.org//topics/data-science/tutorials/python-iterables/tutorial.html |
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2022-04-25 |
2024-06-25 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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2316 |
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Foundations of Data Science |
Python - Flow Control |
https://training.galaxyproject.org//topics/data-science/tutorials/python-flow/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Introduction to sequencing with Python (part four) |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture5/tutorial.html |
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2024-02-13 |
2024-02-20 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Loops |
https://training.galaxyproject.org//topics/data-science/tutorials/python-loops/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Data manipulation with Pandas |
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2024-02-20 |
2025-02-27 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Versioning your code and data with git |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture7/tutorial.html |
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2024-03-12 |
2024-03-12 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Files & CSV |
https://training.galaxyproject.org//topics/data-science/tutorials/python-files/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Python - Try & Except |
https://training.galaxyproject.org//topics/data-science/tutorials/python-exceptions/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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653 |
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4.283333 |
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Foundations of Data Science |
Python - Introductory Graduation |
https://training.galaxyproject.org//topics/data-science/tutorials/python-basics-recap/tutorial.html |
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2022-04-25 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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12.450000 |
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Foundations of Data Science |
Virtual Environments For Software Development |
https://training.galaxyproject.org//topics/data-science/tutorials/python-venv/tutorial.html |
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2022-10-19 |
2023-05-18 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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Foundations of Data Science |
Conda Environments For Software Development |
https://training.galaxyproject.org//topics/data-science/tutorials/python-conda/tutorial.html |
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2022-10-19 |
2023-05-18 |
3 |
True |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
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782 |
836 |
4.300000 |
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Foundations of Data Science |
Python - Testing |
https://training.galaxyproject.org//topics/data-science/tutorials/python-testing/tutorial.html |
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2022-10-19 |
2023-02-13 |
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True |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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266 |
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7.333333 |
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Foundations of Data Science |
Python - Type annotations |
https://training.galaxyproject.org//topics/data-science/tutorials/python-typing/tutorial.html |
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2022-10-19 |
2023-02-13 |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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667 |
704 |
3.950000 |
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Foundations of Data Science |
Python - Argparse |
https://training.galaxyproject.org//topics/data-science/tutorials/python-argparse/tutorial.html |
|
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2022-04-25 |
2023-01-24 |
5 |
True |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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1407 |
1524 |
2.500000 |
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Foundations of Data Science |
Python - Globbing |
https://training.galaxyproject.org//topics/data-science/tutorials/python-glob/tutorial.html |
|
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2022-04-25 |
2023-02-13 |
3 |
True |
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False |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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583 |
626 |
5.483333 |
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Foundations of Data Science |
Python - Subprocess |
https://training.galaxyproject.org//topics/data-science/tutorials/python-subprocess/tutorial.html |
|
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2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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1221 |
1411 |
2.566667 |
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Foundations of Data Science |
Python - Coding Style |
https://training.galaxyproject.org//topics/data-science/tutorials/python-linting/tutorial.html |
|
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2022-11-03 |
2023-05-18 |
2 |
True |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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278 |
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Foundations of Data Science |
Python - Multiprocessing |
https://training.galaxyproject.org//topics/data-science/tutorials/python-multiprocessing/tutorial.html |
|
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2022-10-19 |
2023-11-16 |
4 |
True |
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
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Development in Galaxy |
JavaScript plugins |
https://training.galaxyproject.org//topics/dev/tutorials/visualization-charts/tutorial.html |
|
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2017-06-22 |
2025-04-08 |
20 |
True |
True |
False |
False |
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3811020 |
9036213 |
7.050000 |
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Development in Galaxy |
Architecture 14 - Galaxy Startup Process |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-startup/slides.html |
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2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
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0 |
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329269 |
558930 |
1.283333 |
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Development in Galaxy |
Tool Dependencies and Conda |
https://training.galaxyproject.org//topics/dev/tutorials/conda/slides.html |
|
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2017-06-20 |
2023-04-14 |
33 |
False |
True |
False |
False |
|
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3810266 |
9035321 |
2.100000 |
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Development in Galaxy |
Architecture 06 - Dependency Injection in Galaxy |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-dependency-injection/slides.html |
|
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2026-02-19 |
2026-02-19 |
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False |
True |
False |
False |
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329269 |
558930 |
1.283333 |
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Development in Galaxy |
Generic plugins |
https://training.galaxyproject.org//topics/dev/tutorials/visualization-generic/tutorial.html |
|
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2016-09-30 |
2023-11-09 |
21 |
True |
True |
False |
False |
|
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0 |
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3810657 |
9035863 |
12.733333 |
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Development in Galaxy |
Architecture 10 - Galaxy File Sources Architecture |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-file-sources/slides.html |
|
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2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
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0 |
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329269 |
558930 |
1.283333 |
0 |
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Development in Galaxy |
ToolFactory: Generating Tools From Simple Scripts |
https://training.galaxyproject.org//topics/dev/tutorials/tool-generators/tutorial.html |
|
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2021-05-26 |
2024-06-14 |
10 |
True |
True |
True |
False |
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0 |
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3598837 |
8306181 |
8.916667 |
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Development in Galaxy |
Architecture 11 - Galaxy Markdown Architecture |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-markdown/slides.html |
|
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2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 01 - Galaxy Ecosystem and Projects |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-ecosystem/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Prerequisites for building software/conda packages |
https://training.galaxyproject.org//topics/dev/tutorials/conda_sys/slides.html |
|
|
2018-02-15 |
2021-05-28 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035321 |
2.100000 |
0 |
|
Development in Galaxy |
Galaxy Webhooks |
https://training.galaxyproject.org//topics/dev/tutorials/webhooks/tutorial.html |
|
|
2017-04-03 |
2025-04-08 |
16 |
True |
True |
False |
False |
|
|
|
0 |
|
3810485 |
9035604 |
10.600000 |
0 |
|
Development in Galaxy |
Architecture 07 - Galaxy Task Management with Celery |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-tasks/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Tool Dependencies and Containers |
https://training.galaxyproject.org//topics/dev/tutorials/containers/slides.html |
|
|
2017-06-20 |
2022-10-18 |
14 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035321 |
2.100000 |
0 |
|
Development in Galaxy |
Architecture 03 - Galaxy Architecture Principles |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-principles/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 12 - Galaxy Client Architecture |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-client/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Scripting Galaxy using the API and BioBlend |
https://training.galaxyproject.org//topics/dev/tutorials/bioblend-api/tutorial.html |
|
|
2017-01-17 |
2023-11-16 |
22 |
True |
True |
True |
False |
|
|
|
0 |
|
3811102 |
9036392 |
12.933333 |
0 |
|
Development in Galaxy |
Galaxy Interactive Tours |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-tours/slides.html |
|
|
2017-01-12 |
2021-07-27 |
14 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035321 |
2.100000 |
0 |
|
Development in Galaxy |
Galaxy Interactive Environments |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-environments/slides.html |
|
|
2017-02-05 |
2023-02-17 |
16 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035321 |
2.100000 |
0 |
|
Development in Galaxy |
Architecture 16 - Galaxy Testing |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-tests/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558930 |
1.283333 |
0 |
|
Development in Galaxy |
Tool development and integration into Galaxy |
https://training.galaxyproject.org//topics/dev/tutorials/tool-integration/slides.html |
|
|
2016-09-30 |
2025-04-08 |
30 |
external |
True |
False |
False |
|
|
|
0 |
|
3810272 |
9035331 |
14.750000 |
0 |
|
Development in Galaxy |
Architecture 15 - Galaxy Production Deployment |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-production/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 04 - Galaxy Files and Directory Structure |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-files/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 08 - Galaxy Application Components: Models, Managers, and Services |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-application-components/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 09 - Galaxy Plugin Architecture |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-plugins/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 02 - Galaxy Project Management and Contribution |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-project-management/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Tool Shed: sharing Galaxy tools |
https://training.galaxyproject.org//topics/dev/tutorials/toolshed/slides.html |
|
|
2017-06-12 |
2022-10-18 |
15 |
False |
True |
False |
False |
|
|
|
0 |
|
3810266 |
9035322 |
2.100000 |
0 |
|
Development in Galaxy |
Architecture 13 - Galaxy Dependencies Management |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-dependencies/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Architecture 05 - Galaxy Web Frameworks |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-frameworks/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
329269 |
558931 |
1.283333 |
0 |
|
Development in Galaxy |
Writing Automated Tests for Galaxy |
https://training.galaxyproject.org//topics/dev/tutorials/writing_tests/tutorial.html |
|
|
2022-07-15 |
2026-02-19 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
316 |
744 |
10.366667 |
0 |
|
Development in Galaxy |
Setting up a dev Onedata instance |
https://training.galaxyproject.org//topics/dev/tutorials/onedata-dev-instance/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
64 |
67 |
7.766667 |
0 |
|
Development in Galaxy |
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks |
https://training.galaxyproject.org//topics/dev/tutorials/tool-from-notebook/tutorial.html |
|
|
2025-12-04 |
2025-12-04 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
75 |
80 |
13.616667 |
0 |
|
Development in Galaxy |
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry |
https://training.galaxyproject.org//topics/dev/tutorials/tool-annotation/tutorial.html |
|
|
2024-03-06 |
2024-11-06 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
335 |
393 |
10.033333 |
0 |
|
Development in Galaxy |
ToolFactory: Generating Tools From More Complex Scripts |
https://training.galaxyproject.org//topics/dev/tutorials/tool-generators-advanced/tutorial.html |
|
|
2021-05-26 |
2024-09-27 |
12 |
True |
False |
True |
False |
|
|
|
0 |
|
482 |
566 |
11.166667 |
0 |
|
Development in Galaxy |
Creating Galaxy tools from Conda Through Deployment |
https://training.galaxyproject.org//topics/dev/tutorials/tool-from-scratch/tutorial.html |
|
|
2021-06-15 |
2024-10-08 |
15 |
True |
False |
True |
False |
|
|
|
0 |
|
2943 |
4698 |
6.150000 |
0 |
|
Development in Galaxy |
Contributing a New Feature to Galaxy Core |
https://training.galaxyproject.org//topics/dev/tutorials/core-contributing/tutorial.html |
|
|
2021-06-08 |
2026-02-19 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
831 |
1210 |
11.516667 |
0 |
|
Development in Galaxy |
Contributing to BioBlend as a developer |
https://training.galaxyproject.org//topics/dev/tutorials/bioblend-dev/tutorial.html |
|
|
2021-05-25 |
2023-11-09 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
286 |
377 |
13.500000 |
0 |
|
Development in Galaxy |
Data source integration |
https://training.galaxyproject.org//topics/dev/tutorials/data-source-integration/tutorial.html |
|
|
2016-09-30 |
2022-10-18 |
15 |
True |
False |
False |
False |
|
|
|
0 |
|
261 |
371 |
13.450000 |
0 |
|
Development in Galaxy |
Debugging Galaxy |
https://training.galaxyproject.org//topics/dev/tutorials/debugging/tutorial.html |
|
|
2021-06-15 |
2026-02-19 |
16 |
True |
False |
False |
False |
|
|
|
0 |
|
663 |
1269 |
9.300000 |
0 |
|
Development in Galaxy |
Galaxy Interactive Tools |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-tools/tutorial.html |
|
|
2022-03-02 |
2024-12-03 |
9 |
True |
False |
False |
False |
|
|
|
0 |
|
1404 |
1845 |
7.716667 |
0 |
|
Digital Humanities |
Transcribing Audio and Video files with Automated Speech Recognition |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/Whisper_speech_recognition/tutorial.html |
|
|
2026-04-08 |
2026-04-08 |
1 |
True |
False |
False |
True |
tp_grep_tool, tp_find_and_replace, whisperx |
UseGalaxy.eu |
|
0 |
|
54 |
60 |
4.383333 |
0 |
|
Digital Humanities |
Introduction to Digital Humanities in Galaxy |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/introduction_to_dh/tutorial.html |
|
|
2025-09-11 |
2026-05-04 |
6 |
True |
False |
False |
True |
tp_find_and_replace, Remove beginning1, tp_grep_tool, diff, tp_replace_in_line, wordcloud |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
188 |
226 |
10.450000 |
0 |
|
Digital Humanities |
OpenRefine Tutorial for researching cultural data |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/open-refine-tutorial/tutorial.html |
|
|
2025-09-24 |
2026-04-29 |
3 |
True |
False |
False |
True |
param_value_from_file, filter_tabular, compose_text_param, datamash_ops, Remove beginning1, tp_sort_header_tool, tp_grep_tool, Cut1, barchart_gnuplot, tp_head_tool, regexColumn1, wordcloud, interactive_tool_openrefine |
UseGalaxy.eu |
|
0 |
|
214 |
239 |
3.900000 |
0 |
|
Digital Humanities |
Text-Mining Differences in Chinese Newspaper Articles |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/text_mining_chinese/tutorial.html |
|
|
2025-02-28 |
2026-05-06 |
7 |
True |
False |
False |
True |
Grep1, datamash_ops, tp_sort_header_tool, Add_a_column1, Cut1, diff, tp_replace_in_line, wordcloud |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
239 |
269 |
5.366667 |
0 |
|
Ecology |
Biodiversity data exploration |
https://training.galaxyproject.org//topics/ecology/tutorials/biodiversity-data-exploration/tutorial.html |
|
|
2022-03-01 |
2026-04-24 |
16 |
True |
False |
True |
True |
ecology_link_between_var, ecology_homogeneity_normality, tp_cut_tool, Remove beginning1, ecology_beta_diversity, regexColumn1, tool_anonymization, ecology_presence_abs_abund, ecology_stat_presence_abs |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
1775 |
2458 |
10.566667 |
0 |
|
Ecology |
Life Traits Ecoregionalization workflow |
https://training.galaxyproject.org//topics/ecology/tutorials/ecoregiolifetraits/tutorial.html |
|
|
2025-06-02 |
2026-05-07 |
4 |
True |
False |
False |
False |
column_remove_by_header, unzip, tp_cut_tool, ecoregion_taxa_seeker, ecoregion_brt_analysis, WormsMeasurements, ecoregion_GeoNearestNeighbor, ecoregion_eco_map, Filter1, ClaraGuess, regexColumn1 |
UseGalaxy.eu |
|
0 |
|
73 |
76 |
23.000000 |
0 |
|
Ecology |
RAD-Seq to construct genetic maps |
https://training.galaxyproject.org//topics/ecology/tutorials/genetic-map-rad-seq/tutorial.html |
|
Data handling |
2017-02-14 |
2026-05-07 |
14 |
True |
False |
False |
True |
stacks_genotypes, stacks_denovomap |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
|
0 |
|
963 |
1325 |
8.316667 |
0 |
|
Ecology |
Marine Omics identifying biosynthetic gene clusters |
https://training.galaxyproject.org//topics/ecology/tutorials/marine_omics_bgc/tutorial.html |
|
Genome annotation, Protein feature detection, Sequence motif recognition |
2024-08-19 |
2025-06-03 |
3 |
True |
False |
False |
True |
SanntiS_marine, interproscan, prodigal, regex1, sanntis_marine |
|
|
0 |
|
285 |
325 |
11.550000 |
0 |
|
Ecology |
Metabarcoding/eDNA through Obitools |
https://training.galaxyproject.org//topics/ecology/tutorials/Obitools-metabarcoding/tutorial.html |
|
Sequence composition calculation, Statistical calculation, Sequence analysis, Sequencing quality control |
2022-02-28 |
2026-05-07 |
13 |
True |
False |
True |
True |
obi_illumina_pairend, obi_uniq, unzip, obi_annotate, fastqc, Filter1, fastq_groomer, obi_grep, obi_tab, obi_ngsfilter, Cut1, obi_clean, obi_stat, wc_gnu, seq_filter_by_id, join1, ncbi_blastn_wrapper |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no |
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
4998 |
6888 |
3.733333 |
0 |
|
Ecology |
Cleaning GBIF data for the use in Ecology |
https://training.galaxyproject.org//topics/ecology/tutorials/gbif_cleaning/tutorial.html |
|
|
2022-10-28 |
2025-06-03 |
6 |
True |
False |
False |
True |
Summary_Statistics1, Count1, Filter1, gdal_ogr2ogr, spocc_occ |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no |
|
0 |
|
770 |
943 |
5.616667 |
0 |
|
Ecology |
Preparing genomic data for phylogeny reconstruction |
https://training.galaxyproject.org//topics/ecology/tutorials/phylogeny-data-prep/tutorial.html |
|
Multiple sequence alignment, Sequence analysis, Genome annotation, Sequence assembly validation, Sequence clustering, Genetic variation analysis |
2022-10-21 |
2025-06-03 |
5 |
True |
False |
False |
True |
phykit_alignment_based, repeatmasker_wrapper, Filter1, proteinortho, glimmer_gbk_to_orf, proteinortho_grab_proteins, regex1, clustalw, collapse_dataset, clipkit, busco, tp_replace_in_line, funannotate_predict |
UseGalaxy.be |
|
0 |
|
2439 |
3311 |
6.800000 |
0 |
|
Ecology |
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities |
https://training.galaxyproject.org//topics/ecology/tutorials/MetaShARK_tutorial/tutorial.html |
|
|
2024-03-04 |
2026-05-07 |
9 |
True |
False |
False |
False |
interactive_tool_metashark |
UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
326 |
386 |
4.450000 |
0 |
|
Ecology |
Checking expected species and contamination in bacterial isolate |
https://training.galaxyproject.org//topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.html |
Whole genome sequencing, Genomics, Microbiology, Microbial ecology |
Cross-assembly, Expression analysis, Taxonomic classification, Statistical calculation |
2024-03-04 |
2026-04-08 |
6 |
True |
False |
False |
True |
recentrifuge, upload1, kraken2, est_abundance |
UseGalaxy.eu, UseGalaxy.fr |
Galaxy@AuBi, GalaxyTrakr, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.org (Main) |
0 |
|
1036 |
1378 |
8.266667 |
0 |
|
Ecology |
Taxonomic Analysis of eDNA |
https://training.galaxyproject.org//topics/ecology/tutorials/eDNA-taxonomic-analysis/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control |
2025-06-02 |
2026-05-07 |
3 |
True |
False |
False |
True |
ncbi_blastn_wrapper, Count1, fastp, cshl_fastq_to_fasta |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.no |
0 |
|
734 |
902 |
3.850000 |
0 |
|
Ecology |
Phylodiversity analysis quick tutorial |
https://training.galaxyproject.org//topics/ecology/tutorials/phylodiversity_workflow/tutorial.html |
|
|
2025-06-06 |
2026-05-07 |
2 |
True |
False |
False |
False |
estimate_endem, phylo_index, crsconverter, phylogenetic_occupancy_matcher |
UseGalaxy.eu |
|
0 |
|
139 |
165 |
8.783333 |
0 |
|
Ecology |
Ecoregionalization workflow tutorial |
https://training.galaxyproject.org//topics/ecology/tutorials/Ecoregionalization_tutorial/tutorial.html |
|
|
2024-09-16 |
2025-06-03 |
7 |
True |
False |
False |
True |
unzip, filter_tabular, tp_cut_tool, ecoregion_cluster_estimate, ecoregion_taxa_seeker, ecoregion_brt_analysis, ecoregion_GeoNearestNeighbor, ecoregion_eco_map, mergeCols1, interactive_tool_jupyter_notebook, regexColumn1, ecoregion_clara_cluster |
UseGalaxy.eu |
|
0 |
|
431 |
537 |
7.383333 |
0 |
|
Ecology |
RAD-Seq Reference-based data analysis |
https://training.galaxyproject.org//topics/ecology/tutorials/ref-based-rad-seq/tutorial.html |
|
Read mapping, Statistical calculation, Generation, Data handling, Validation, Genome indexing, Sequence composition calculation, Sequence alignment, Sequencing quality control |
2017-02-14 |
2026-05-07 |
16 |
True |
False |
False |
True |
Summary_Statistics1, Grep1, bwa, Count1, multiqc, tp_sort_header_tool, fastqc, Filter1, cat1, addValue, bwa_wrapper, stacks_procrad, regex_replace, Cut1, Convert characters1, stacks_populations, stacks_refmap, tp_replace_in_line |
|
|
0 |
|
3467 |
5297 |
4.700000 |
0 |
|
Ecology |
Sentinel 2 biodiversity |
https://training.galaxyproject.org//topics/ecology/tutorials/remote-sensing/tutorial.html |
|
|
2023-04-13 |
2025-12-08 |
7 |
True |
False |
False |
True |
srs_process_data, srs_spectral_indices, srs_global_indices, srs_pca, srs_diversity_maps, srs_preprocess_s2 |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
695 |
879 |
6.616667 |
0 |
|
Ecology |
Compute and analyze biodiversity metrics with PAMPA toolsuite |
https://training.galaxyproject.org//topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.html |
|
|
2020-11-19 |
2026-05-07 |
24 |
True |
False |
True |
True |
pampa_plotglm, Count1, tp_cut_tool, tp_sort_header_tool, Filter1, mergeCols1, tp_cat, regex1, pampa_communitymetrics, datamash_transpose, tp_easyjoin_tool, pampa_glmsp, pampa_glmcomm, regexColumn1, pampa_presabs |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
1172 |
1544 |
10.700000 |
0 |
|
Ecology |
From NDVI data with OpenEO to time series visualisation with Holoviews |
https://training.galaxyproject.org//topics/ecology/tutorials/ndvi_openeo/tutorial.html |
|
|
2024-01-24 |
2024-06-29 |
3 |
True |
False |
False |
True |
interactive_tool_copernicus_notebook, interactive_tool_holoviz |
UseGalaxy.eu |
|
0 |
|
266 |
307 |
7.516667 |
0 |
|
Ecology |
Regional GAM |
https://training.galaxyproject.org//topics/ecology/tutorials/regionalGAM/tutorial.html |
Ecology |
Visualisation |
2019-07-04 |
2026-05-07 |
19 |
True |
False |
False |
True |
tab2csv_R, regionalgam_gls, Count1, Paste1, ggplot2_point, tp_awk_tool, Remove beginning1, regionalgam_autocor_acf, csv2tab_R, Filter1, regionalgam_flight_curve, regionalgam_plot_trend, mergeCols1, regionalgam_ab_index, flight-curve, regionalgam_glmmpql, regexColumn1 |
UseGalaxy.be |
|
0 |
|
382 |
500 |
16.033333 |
0 |
|
Ecology |
Visualization of Climate Data using NetCDF xarray Map Plotting |
https://training.galaxyproject.org//topics/ecology/tutorials/x-array-map-plot/tutorial.html |
|
|
2022-10-26 |
2024-06-27 |
9 |
True |
False |
False |
True |
xarray_metadata_info, cdo_operations, xarray_mapplot, xarray_coords_info, graphicsmagick_image_montage |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
2560 |
2942 |
1.566667 |
0 |
|
Ecology |
Data submission using ENA upload Tool |
https://training.galaxyproject.org//topics/ecology/tutorials/ENA_Biodiv_submission/tutorial.html |
|
Validation, Read mapping, Primer removal, Read pre-processing, Visualisation, Sequence trimming, Sequencing quality control |
2024-12-13 |
2026-05-07 |
3 |
True |
False |
False |
False |
Paste1, collection_element_identifiers, __FILTER_EMPTY_DATASETS__, multiqc, ab1_fastq_converter, fastq_groomer, falco, regex1, __RELABEL_FROM_FILE__, fastq_filter, cutadapt, bg_uniq, ncbi_blastn_wrapper, fastq_to_fasta_python |
UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
364 |
387 |
4.000000 |
0 |
|
Ecology |
Species distribution modeling |
https://training.galaxyproject.org//topics/ecology/tutorials/species-distribution-modeling/tutorial.html |
|
|
2019-07-04 |
2026-05-07 |
19 |
True |
False |
False |
True |
tp_find_and_replace, tp_cut_tool, interactive_tool_wallace, tabular_to_csv, Filter1, spocc_occ |
UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
3448 |
5157 |
3.933333 |
0 |
|
Ecology |
RAD-Seq de-novo data analysis |
https://training.galaxyproject.org//topics/ecology/tutorials/de-novo-rad-seq/tutorial.html |
|
Data handling, Sequence composition calculation, Statistical calculation, Sequencing quality control |
2017-02-14 |
2026-05-07 |
15 |
True |
False |
False |
True |
fastqc, stacks_denovomap, stacks_populations, stacks_procrad |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no |
0 |
|
2810 |
4421 |
5.250000 |
0 |
|
Ecology |
Champs blocs indicators |
https://training.galaxyproject.org//topics/ecology/tutorials/champs-blocs/tutorial.html |
|
|
2023-01-04 |
2026-05-07 |
13 |
True |
False |
False |
True |
cb_ivr, cb_qecb, cb_eco, cb_div, cb_dissim |
|
|
0 |
|
212 |
365 |
15.383333 |
0 |
|
Ecology |
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS |
https://training.galaxyproject.org//topics/ecology/tutorials/Metashrimps_tutorial/tutorial.html |
|
|
2024-01-22 |
2026-05-07 |
7 |
True |
False |
False |
False |
interactive_tool_metashrimps |
UseGalaxy.eu |
|
0 |
|
147 |
158 |
9.000000 |
0 |
|
Ecology |
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos |
https://training.galaxyproject.org//topics/ecology/tutorials/SAM3/tutorial.html |
|
|
2026-05-07 |
2026-05-12 |
3 |
True |
False |
False |
False |
interactive_tool_anylabeling, sam3_semantic_segmentation |
UseGalaxy.eu |
|
0 |
|
54 |
70 |
10.266667 |
0 |
|
Ecology |
Obis marine indicators |
https://training.galaxyproject.org//topics/ecology/tutorials/obisindicators/tutorial.html |
Biodiversity, Ecology, Data mining |
|
2023-04-11 |
2026-05-19 |
10 |
True |
False |
False |
True |
obisindicators, obis_data, tp_cut_tool |
UseGalaxy.eu |
UseGalaxy.be |
0 |
|
361 |
445 |
12.416667 |
0 |
|
Ecology |
QGIS Web Feature Services |
https://training.galaxyproject.org//topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.html |
|
|
2023-10-11 |
2026-05-07 |
7 |
True |
False |
False |
False |
interactive_tool_qgis |
UseGalaxy.eu |
|
0 |
|
355 |
402 |
7.366667 |
0 |
|
Ecology |
Visualize EBV cube data with Panoply netCDF viewer |
https://training.galaxyproject.org//topics/ecology/tutorials/panoply_ebv/tutorial.html |
|
|
2022-10-28 |
2026-05-07 |
10 |
True |
False |
False |
False |
interactive_tool_panoply |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
303 |
366 |
6.650000 |
0 |
|
Ecology |
Audio data annotation with NEAL (Nature + Energy Audio labeler) |
https://training.galaxyproject.org//topics/ecology/tutorials/NEAL_tutorial/tutorial.html |
|
|
2025-10-14 |
2025-11-06 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
109 |
124 |
3.700000 |
0 |
|
Ecology |
Cleaning GBIF data using OpenRefine |
https://training.galaxyproject.org//topics/ecology/tutorials/openrefine_gbif/tutorial.html |
|
|
2025-01-21 |
2026-05-07 |
7 |
True |
False |
False |
False |
regex1, interactive_tool_openrefine |
UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
253 |
305 |
7.566667 |
0 |
|
Ecology |
Object detection with YOLO |
https://training.galaxyproject.org//topics/ecology/tutorials/yolo_predict_deepsea/tutorial.html |
|
|
2026-05-06 |
2026-05-08 |
3 |
True |
False |
False |
True |
yolo_predict, yolo_training, unzip |
UseGalaxy.eu |
|
0 |
|
40 |
47 |
11.450000 |
0 |
|
Teaching and Hosting Galaxy training |
Assessment and feedback in training and teachings |
https://training.galaxyproject.org//topics/teaching/tutorials/assessment/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
1400 |
1624 |
4.650000 |
0 |
|
Teaching and Hosting Galaxy training |
Train-the-Trainer: putting it all together |
https://training.galaxyproject.org//topics/teaching/tutorials/workshop-final-exercise/tutorial.html |
|
|
2023-06-12 |
2025-03-11 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
132 |
154 |
19.600000 |
0 |
|
Teaching and Hosting Galaxy training |
Training techniques to enhance learner participation and engagement |
https://training.galaxyproject.org//topics/teaching/tutorials/learner_participation_engagement/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
14 |
True |
False |
False |
False |
|
|
|
0 |
|
1723 |
2028 |
2.950000 |
0 |
|
Teaching and Hosting Galaxy training |
Motivation and Demotivation |
https://training.galaxyproject.org//topics/teaching/tutorials/motivation_demotivation/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
2038 |
2427 |
2.216667 |
0 |
|
Statistics and machine learning |
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-pretraining/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1862 |
2345 |
3.616667 |
0 |
|
Statistics and machine learning |
Foundational Aspects of Machine Learning using Python |
https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-python/tutorial.html |
|
|
2025-03-11 |
2025-05-19 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1122 |
1391 |
5.833333 |
0 |
|
Statistics and machine learning |
Fine-tuning a LLM for DNA Sequence Classification |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-finetuning/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1076 |
1364 |
3.150000 |
0 |
|
Statistics and machine learning |
Neural networks using Python |
https://training.galaxyproject.org//topics/statistics/tutorials/neural-networks-with-python/tutorial.html |
|
|
2025-03-11 |
2025-03-11 |
1 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1436795 |
2518494 |
12.183333 |
0 |
|
Statistics and machine learning |
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-zeroshot-prediction/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
370 |
437 |
5.066667 |
0 |
|
Statistics and machine learning |
Deep Learning (without Generative Artificial Intelligence) using Python |
https://training.galaxyproject.org//topics/statistics/tutorials/deep-learning-without-gai-with-python/tutorial.html |
|
|
2025-03-11 |
2025-03-11 |
1 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1436792 |
2518491 |
9.000000 |
0 |
|
Statistics and machine learning |
Generating Artificial Yeast DNA Sequences using a DNA LLM |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-generation/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
271 |
311 |
6.100000 |
0 |
|
Statistics and machine learning |
Optimizing DNA Sequences for Biological Functions using a DNA LLM |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-optimization/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
64 |
78 |
5.583333 |
0 |
|
Statistics and machine learning |
Regulations/standards for AI using DOME |
https://training.galaxyproject.org//topics/statistics/tutorials/dome/tutorial.html |
|
|
2025-03-11 |
2025-05-19 |
3 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1436865 |
2518579 |
7.883333 |
0 |
|
Epigenetics |
Formation of the Super-Structures on the Inactive X |
https://training.galaxyproject.org//topics/epigenetics/tutorials/formation_of_super-structures_on_xi/tutorial.html |
|
Peak calling, Gene regulatory network analysis, Structure visualisation, Pathway visualisation, Read mapping, Primer removal, Statistical calculation, Mapping, Genome visualisation, Sequence composition calculation, Read pre-processing, Enrichment analysis, Sequence trimming, Sequencing quality control |
2018-09-17 |
2026-04-13 |
16 |
True |
True |
False |
True |
deeptools_plot_fingerprint, cat1, samtools_idxstats, deeptools_bam_compare, Filter1, macs2_callpeak, bowtie2, __FLATTEN__, deeptools_compute_matrix, deeptools_plot_correlation, trim_galore, fastqc, deeptools_bam_coverage, bedtools_sortbed, bedtools_mergebed, jbrowse2, deeptools_plot_heatmap, bbgtobigwig, deeptools_multi_bam_summary |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
3816714 |
9047820 |
9.500000 |
0 |
|
Epigenetics |
Identification of the binding sites of the Estrogen receptor |
https://training.galaxyproject.org//topics/epigenetics/tutorials/estrogen-receptor-binding-site-identification/tutorial.html |
|
Peak calling, Gene regulatory network analysis, Statistical calculation, Read mapping, Primer removal, Sequence composition calculation, Read pre-processing, Enrichment analysis, Sequence trimming, Sequencing quality control |
2017-09-18 |
2025-04-08 |
10 |
True |
False |
False |
True |
deeptools_bam_compare, deeptools_plot_fingerprint, fastqc, bam_to_sam, macs2_callpeak, bowtie2, deeptools_compute_gc_bias, deeptools_plot_heatmap, deeptools_bam_coverage, deeptools_multi_bam_summary, deeptools_compute_matrix, deeptools_plot_correlation, samtools_idxstats, trim_galore |
UseGalaxy.be |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
2063 |
3002 |
6.583333 |
0 |
|
Epigenetics |
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer |
https://training.galaxyproject.org//topics/epigenetics/tutorials/hicexplorer/tutorial.html |
|
Visualisation, Formatting, Read mapping |
2018-02-23 |
2026-03-16 |
31 |
True |
False |
False |
True |
hicexplorer_hicbuildmatrix, hicexplorer_hicfindrestrictionsites, hicexplorer_hicpca, hicexplorer_hicmergematrixbins, pygenomeTracks, hicexplorer_hicinfo, hicexplorer_hicdetectloops, hicexplorer_hicfindtads, bowtie2, hicexplorer_hiccorrectmatrix, hicexplorer_hicplotmatrix |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
8031 |
13209 |
3.633333 |
0 |
|
Epigenetics |
DNA Methylation data analysis |
https://training.galaxyproject.org//topics/epigenetics/tutorials/methylation-seq/tutorial.html |
Epigenomics |
Sequence composition calculation, Statistical calculation, Visualisation, Sequencing quality control, Read mapping |
2017-02-16 |
2025-04-03 |
24 |
True |
False |
False |
True |
metilene, bwameth, wig_to_bigWig, tp_awk_tool, deeptools_plot_profile, fastqc, replace_column_with_key_value_file, tp_tail_tool, falco, deeptools_compute_matrix, pileometh |
|
|
0 |
|
16046 |
26237 |
4.583333 |
0 |
|
Epigenetics |
ATAC-Seq data analysis |
https://training.galaxyproject.org//topics/epigenetics/tutorials/atac-seq/tutorial.html |
|
Sequence alignment analysis, Peak calling, Gene regulatory network analysis, Read mapping, Primer removal, Statistical calculation, Mapping, Visualisation, Data handling, Sequence composition calculation, Read pre-processing, Enrichment analysis, Formatting, Sequence trimming, Sequencing quality control |
2019-09-02 |
2025-12-18 |
24 |
True |
True |
True |
True |
pygenomeTracks, bedtools_bamtobed, samtools_idxstats, tp_sort_header_tool, Filter1, macs2_callpeak, bowtie2, __FLATTEN__, cutadapt, deeptools_compute_matrix, bedtools_intersectbed, bamFilter, wig_to_bigWig, fastqc, Cut1, pe_histogram, Grep1, picard_MarkDuplicates, deeptools_plot_heatmap |
|
|
0 |
|
3878349 |
9155959 |
4.883333 |
0 |
|
Epigenetics |
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) |
https://training.galaxyproject.org//topics/epigenetics/tutorials/tal1-binding-site-identification/tutorial.html |
ChIP-seq |
Peak calling, Gene regulatory network analysis, Statistical calculation, Read mapping, Mapping, Generation, Genome indexing, Sequence composition calculation, Enrichment analysis, Sequence alignment, Sequencing quality control |
2016-12-20 |
2025-04-08 |
11 |
True |
False |
False |
True |
bwa, deeptools_bam_compare, deeptools_plot_correlation, deeptools_plot_fingerprint, fastqc, trimmomatic, macs2_callpeak, bedtools_intersectbed, deeptools_compute_gc_bias, deeptools_plot_heatmap, deeptools_multi_bam_summary, deeptools_compute_matrix, deeptools_correct_gc_bias, samtools_idxstats |
UseGalaxy.be, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
7748 |
14124 |
7.333333 |
0 |
|
Epigenetics |
CUT&RUN data analysis |
https://training.galaxyproject.org//topics/epigenetics/tutorials/cut_and_run/tutorial.html |
|
Sequence alignment analysis, Peak calling, Gene regulatory network analysis, Read mapping, Primer removal, Mapping, Visualisation, Data handling, Validation, Read pre-processing, Enrichment analysis, Formatting, Sequence trimming, Sequencing quality control |
2024-03-06 |
2025-03-19 |
5 |
True |
False |
False |
True |
multiqc, deeptools_plot_fingerprint, bedtools_bamtobed, idr, macs2_callpeak, bowtie2, datamash_transpose, __FLATTEN__, deeptools_compute_matrix, bedtools_intersectbed, trim_galore, bamFilter, wig_to_bigWig, __EXTRACT_DATASET__, meme_chip, pe_histogram, Grep1, picard_MarkDuplicates, Extract genomic DNA 1, deeptools_plot_heatmap, falco |
|
|
0 |
|
8013 |
10152 |
2.400000 |
0 |
|
Epigenetics |
Infinium Human Methylation BeadChip |
https://training.galaxyproject.org//topics/epigenetics/tutorials/ewas-suite/tutorial.html |
|
|
2018-08-27 |
2024-10-15 |
21 |
True |
True |
False |
True |
minfi_analysis, chipeakanno_annopeaks, clusterprofiler_go, Remove beginning1, Cut1, clusterprofiler_bitr |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
|
0 |
|
3812468 |
9038750 |
8.816667 |
0 |
|
Epigenetics |
Introduction to DNA Methylation data analysis |
https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-dna-methylation/slides.html |
|
|
2016-10-05 |
2024-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810266 |
9035334 |
2.100000 |
0 |
|
Epigenetics |
Introduction to ChIP-Seq data analysis |
https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-chip-seq/slides.html |
|
|
2017-06-12 |
2024-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810266 |
9035334 |
2.100000 |
0 |
|
Evolution |
Phylogenetics - Back to basics |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo/tutorial.html |
|
Phylogenetic analysis, Multiple sequence alignment, Phylogenetic tree generation (maximum likelihood and Bayesian methods), Phylogenetic tree generation (from molecular sequences), Phylogenetic tree analysis, Sequence analysis, Phylogenetic tree reconstruction, Phylogenetic tree generation |
2024-05-10 |
2024-05-10 |
1 |
True |
False |
False |
True |
rbc_mafft, newick_display, fasttree, iqtree |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
7251 |
9242 |
3.700000 |
0 |
|
Evolution |
Tree thinking for tuberculosis evolution and epidemiology |
https://training.galaxyproject.org//topics/evolution/tutorials/mtb_phylogeny/tutorial.html |
Genomics, Microbiology, Phylogeny, Infectious disease |
Phylogenetic tree analysis, Sequence analysis |
2022-03-16 |
2025-06-04 |
12 |
True |
False |
False |
True |
upload1, raxml, interactive_tool_rstudio |
UseGalaxy.eu |
|
0 |
|
2502 |
3565 |
8.050000 |
0 |
|
Evolution |
Identifying tuberculosis transmission links: from SNPs to transmission clusters |
https://training.galaxyproject.org//topics/evolution/tutorials/mtb_transmission/tutorial.html |
Genomics, Microbiology, Infectious disease, DNA polymorphism |
Phylogenetic tree visualisation, Antimicrobial resistance prediction, Variant calling, Phylogenetic tree generation |
2022-03-16 |
2025-05-26 |
13 |
True |
False |
False |
True |
addName, __MERGE_COLLECTION__, trimmomatic, collapse_dataset, tp_replace_in_line, snippy, samtools_view, tp_cat, tp_sed_tool, tb_variant_filter, bcftools_consensus, snp_sites, tp_grep_tool, tb_profiler_profile, upload1, Grep1, clustering_from_distmat, snp_dists, tp_easyjoin_tool |
UseGalaxy.eu |
|
0 |
|
3555 |
5077 |
7.800000 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Introduction |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-intro/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656637 |
1.650000 |
0 |
|
Evolution |
Phylogenetic analysis for bacterial comparative genomics |
https://training.galaxyproject.org//topics/evolution/tutorials/bacterial-comparative-genomics/tutorial.html |
Genomics, Microbiology, Phylogeny |
Phylogenetic tree generation (maximum likelihood and Bayesian methods), Phylogenetic tree generation (from molecular sequences) |
2025-03-14 |
2025-03-14 |
1 |
True |
False |
False |
False |
upload1, fasttree |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
GalaxyTrakr |
0 |
|
198 |
239 |
10.266667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Terminology |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-terminology/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656638 |
1.650000 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Multiple Sequence Alignment |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-msa/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656638 |
1.650000 |
0 |
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Evolution |
Phylogenetics - Back to Basics - Building Trees |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-trees/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656638 |
1.650000 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Estimating trees from alignments |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-mle-trees/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656638 |
1.650000 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Phylogenetic Networks |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-networks/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1894343 |
3656638 |
1.650000 |
0 |
|
FAIR Data, Workflows, and Research |
Data management in Medicinal Chemistry |
https://training.galaxyproject.org//topics/fair/tutorials/med-chem-data/tutorial.html |
|
|
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
ctb_silicos_qed, openbabel_svg_depiction, md_converter, get_pdb, ctb_im_rxn_maker, openbabel_compound_convert, chembl |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.no |
0 |
|
7 |
7 |
0.000000 |
0 |
|
FAIR Data, Workflows, and Research |
An earth-system RO-Crate |
https://training.galaxyproject.org//topics/fair/tutorials/earth_system_rocrate/slides.html |
|
|
2024-12-02 |
2024-12-02 |
1 |
False |
True |
True |
False |
|
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1586674 |
2886941 |
1.433333 |
0 |
|
FAIR Data, Workflows, and Research |
Uploading Data to Zenodo from Galaxy |
https://training.galaxyproject.org//topics/fair/tutorials/zenodo-in-galaxy/tutorial.html |
|
|
2025-11-06 |
2025-11-06 |
1 |
True |
False |
False |
False |
|
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UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
106 |
109 |
15.333333 |
0 |
|
FAIR Data, Workflows, and Research |
Making clinical datasets FAIR |
https://training.galaxyproject.org//topics/fair/tutorials/fair-clinical/tutorial.html |
|
|
2023-10-24 |
2024-09-13 |
5 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
409 |
516 |
8.066667 |
0 |
|
FAIR Data, Workflows, and Research |
Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub |
https://training.galaxyproject.org//topics/fair/tutorials/data-management-peatlands/tutorial.html |
|
|
2024-09-13 |
2024-09-13 |
1 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
143 |
176 |
6.466667 |
0 |
|
FAIR Data, Workflows, and Research |
Workflow Run RO-Crate Introduction |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-workflow-run-ro-crate/tutorial.html |
|
|
2023-05-11 |
2023-05-11 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
439 |
539 |
4.916667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR and its Origins |
https://training.galaxyproject.org//topics/fair/tutorials/fair-origin/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
202 |
224 |
7.650000 |
0 |
|
FAIR Data, Workflows, and Research |
RO-Crate - Introduction |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-intro/tutorial.html |
|
|
2023-05-23 |
2025-04-08 |
5 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
720 |
924 |
6.366667 |
0 |
|
FAIR Data, Workflows, and Research |
Sequence data submission to ENA |
https://training.galaxyproject.org//topics/fair/tutorials/fair-ena/tutorial.html |
|
|
2023-11-01 |
2024-06-25 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
768 |
892 |
2.166667 |
0 |
|
FAIR Data, Workflows, and Research |
Integrating InvenioRDM-compatible Repositories with Galaxy |
https://training.galaxyproject.org//topics/fair/tutorials/inveniordm-integration/tutorial.html |
|
|
2025-11-06 |
2025-11-06 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
78 |
85 |
5.883333 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR in a nutshell |
https://training.galaxyproject.org//topics/fair/tutorials/fair-intro/tutorial.html |
|
|
2023-05-30 |
2024-04-30 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1034 |
1302 |
7.733333 |
0 |
|
FAIR Data, Workflows, and Research |
DataPLANT ARCs |
https://training.galaxyproject.org//topics/fair/tutorials/dataplant-arcs/tutorial.html |
|
|
2024-10-22 |
2025-09-17 |
4 |
True |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1648097 |
3031417 |
7.066667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR data management solutions |
https://training.galaxyproject.org//topics/fair/tutorials/data-management/tutorial.html |
|
|
2023-05-30 |
2025-01-16 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
452 |
545 |
9.033333 |
0 |
|
FAIR Data, Workflows, and Research |
RO-Crate in Python |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-python/tutorial.html |
|
|
2023-05-11 |
2025-04-08 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
306 |
341 |
5.633333 |
0 |
|
FAIR Data, Workflows, and Research |
Exporting Workflow Run RO-Crates from Galaxy |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-galaxy/tutorial.html |
|
|
2023-05-11 |
2024-08-26 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
340 |
409 |
10.750000 |
0 |
|
FAIR Data, Workflows, and Research |
Metadata |
https://training.galaxyproject.org//topics/fair/tutorials/fair-metadata/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
280 |
325 |
6.466667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR Galaxy Training Material |
https://training.galaxyproject.org//topics/fair/tutorials/fair-gtn/tutorial.html |
|
|
2023-05-30 |
2024-03-27 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
196 |
233 |
11.216667 |
0 |
|
FAIR Data, Workflows, and Research |
Data Registration |
https://training.galaxyproject.org//topics/fair/tutorials/fair-data-registration/tutorial.html |
|
|
2024-03-26 |
2024-09-27 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
127 |
134 |
9.216667 |
0 |
|
FAIR Data, Workflows, and Research |
Best practices for workflows in GitHub repositories |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-galaxy-best-practices/tutorial.html |
|
|
2023-05-11 |
2025-04-08 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
461 |
529 |
8.900000 |
0 |
|
FAIR Data, Workflows, and Research |
Access |
https://training.galaxyproject.org//topics/fair/tutorials/fair-access/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
110 |
122 |
11.566667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR Bioimage Metadata |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-metadata/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
395 |
464 |
10.800000 |
0 |
|
FAIR Data, Workflows, and Research |
Submitting workflows to LifeMonitor |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-submitting-life-monitor/tutorial.html |
|
|
2023-05-11 |
2024-09-26 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
98 |
116 |
10.833333 |
0 |
|
FAIR Data, Workflows, and Research |
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-REMBI/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
9 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
418 |
480 |
7.583333 |
0 |
|
FAIR Data, Workflows, and Research |
Persistent Identifiers |
https://training.galaxyproject.org//topics/fair/tutorials/fair-persistent-identifiers/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
337 |
408 |
4.966667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIRification of an RNAseq dataset |
https://training.galaxyproject.org//topics/fair/tutorials/fair-rna/tutorial.html |
|
|
2024-03-27 |
2024-03-27 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
353 |
416 |
6.933333 |
0 |
|
Using Galaxy and Managing your Data |
Using Workflow Parameters |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-parameters/tutorial.html |
|
|
2019-06-27 |
2024-06-14 |
15 |
True |
False |
True |
True |
tp_head_tool |
Galaxy@AuBi, GalaxyTrakr, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
HyPhy HIV NGS Tools, MISSISSIPPI |
0 |
|
2107 |
2675 |
8.766667 |
0 |
|
Using Galaxy and Managing your Data |
InterMine integration with Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/intermine/tutorial.html |
|
|
2020-12-09 |
2024-02-29 |
9 |
True |
False |
False |
True |
intermine, galaxy_intermine_exchange |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
|
0 |
|
239 |
305 |
21.416667 |
0 |
|
Using Galaxy and Managing your Data |
Workflow Reports |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-reports/tutorial.html |
|
Visualisation |
2022-06-02 |
2024-06-14 |
9 |
True |
False |
True |
True |
upload1, Grouping1, datamash_ops, ggplot2_point, tp_sorted_uniq, Remove beginning1, csv_to_tabular, Cut1 |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.cz |
0 |
|
989 |
1337 |
9.400000 |
0 |
|
Using Galaxy and Managing your Data |
Creating, Editing and Importing Galaxy Workflows |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-editor/tutorial.html |
|
|
2020-07-17 |
2023-11-09 |
12 |
True |
False |
False |
True |
Show beginning1, Paste1, tp_tac |
Galaxy@AuBi, GalaxyTrakr, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
HyPhy HIV NGS Tools, MISSISSIPPI |
0 |
|
6435 |
7974 |
7.316667 |
0 |
|
Using Galaxy and Managing your Data |
Getting data into Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/get-data/slides.html |
|
|
2017-05-24 |
2022-10-18 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810266 |
9035338 |
2.100000 |
0 |
|
Using Galaxy and Managing your Data |
Galaxy workflows in Dockstore |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-on-dockstore/slides.html |
|
|
2022-01-14 |
2022-10-27 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3262428 |
7199358 |
2.000000 |
0 |
|
Using Galaxy and Managing your Data |
Creating high resolution images of Galaxy Workflows |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-posters/tutorial.html |
|
|
2024-02-05 |
2025-04-08 |
3 |
True |
False |
False |
False |
graphicsmagick_image_convert |
UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
359 |
438 |
13.666667 |
0 |
|
Using Galaxy and Managing your Data |
Importing (uploading) data from Onedata |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-import/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
365 |
475 |
12.783333 |
0 |
|
Using Galaxy and Managing your Data |
Searching Your History |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/search/tutorial.html |
|
|
2020-07-15 |
2023-11-16 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
465 |
687 |
18.766667 |
0 |
|
Using Galaxy and Managing your Data |
Getting started with Onedata distributed storage |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-getting-started/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
284 |
385 |
11.016667 |
0 |
|
Using Galaxy and Managing your Data |
Annotate, prepare tests and publish Galaxy workflows in workflow registries |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-fairification/tutorial.html |
|
Validation, Read mapping, Visualisation, Sequencing quality control |
2025-05-26 |
2025-05-26 |
1 |
True |
False |
False |
False |
multiqc, falco |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr |
0 |
|
427 |
505 |
8.466667 |
0 |
|
Using Galaxy and Managing your Data |
Rule Based Uploader: Advanced |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules-advanced/tutorial.html |
|
|
2018-05-25 |
2024-06-14 |
11 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
904 |
1203 |
14.883333 |
0 |
|
Using Galaxy and Managing your Data |
Onedata user-owned storage |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-byos/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
167 |
197 |
13.366667 |
0 |
|
Using Galaxy and Managing your Data |
Group tags for complex experimental designs |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/group-tags/tutorial.html |
|
|
2019-03-06 |
2023-11-09 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2901 |
3885 |
10.450000 |
0 |
|
Using Galaxy and Managing your Data |
JupyterLab in Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/jupyterlab/tutorial.html |
|
|
2020-03-05 |
2025-04-25 |
9 |
True |
False |
False |
False |
interactive_tool_jupyter_notebook |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
2260 |
3573 |
9.550000 |
0 |
|
Using Galaxy and Managing your Data |
RStudio in Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/rstudio/tutorial.html |
|
|
2019-10-08 |
2026-02-25 |
16 |
True |
False |
False |
False |
interactive_tool_rstudio |
UseGalaxy.eu |
|
0 |
|
5528 |
8596 |
7.733333 |
0 |
|
Using Galaxy and Managing your Data |
Downloading and Deleting Data in Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/download-delete-data/tutorial.html |
|
|
2019-10-17 |
2026-01-23 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
7921 |
10416 |
4.316667 |
0 |
|
Using Galaxy and Managing your Data |
Use Jupyter notebooks in Galaxy |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-intro-jupyter/tutorial.html |
|
|
2018-07-02 |
2025-12-17 |
11 |
True |
False |
True |
False |
interactive_tool_jupyter_notebook |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
2766 |
3627 |
8.366667 |
0 |
|
Using Galaxy and Managing your Data |
Understanding Galaxy history system |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history/tutorial.html |
|
|
2017-02-20 |
2025-04-28 |
12 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
5937 |
7590 |
9.900000 |
0 |
|
Using Galaxy and Managing your Data |
Extracting Workflows from Histories |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history-to-workflow/tutorial.html |
|
|
2017-10-18 |
2024-12-02 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3212 |
4137 |
10.083333 |
0 |
|
Using Galaxy and Managing your Data |
Rule Based Uploader |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules/tutorial.html |
|
|
2020-07-04 |
2024-06-14 |
11 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
5740 |
7386 |
10.433333 |
0 |
|
Using Galaxy and Managing your Data |
Exporting to Onedata remote |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-export/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
100 |
112 |
15.033333 |
0 |
|
Using Galaxy and Managing your Data |
Using dataset collections |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/collections/tutorial.html |
|
Sequence alignment, Generation, Genome indexing, Read mapping |
2016-09-30 |
2024-12-05 |
20 |
True |
False |
True |
False |
collapse_dataset, bwa_mem, lofreq_call, snpSift_extractFields |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
GalaxyTrakr, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
17147 |
23292 |
8.600000 |
0 |
|
Using Galaxy and Managing your Data |
Name tags for following complex histories |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/name-tags/tutorial.html |
|
|
2019-04-08 |
2023-11-09 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1807 |
2388 |
11.300000 |
0 |
|
Genome Annotation |
Genome annotation with Prokka |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis |
Coding region prediction, Gene prediction, Genome annotation, Genome visualisation |
2018-03-06 |
2026-01-23 |
27 |
True |
True |
True |
True |
jbrowse, prokka |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3829962 |
9068268 |
7.166667 |
0 |
|
Genome Annotation |
Refining Genome Annotations with Apollo (prokaryotes) |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis |
Genome visualisation |
2021-06-04 |
2025-05-15 |
22 |
True |
True |
True |
True |
jbrowse, iframe, list_organism, create_account, create_or_update |
|
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
3585787 |
8259740 |
13.183333 |
0 |
|
Genome Annotation |
Bacterial Genome Annotation |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-annotation/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis, Whole genome sequencing, Functional genomics, Mobile genetic elements |
Protein feature detection, Structural variation detection, Genome assembly, Scaffolding, Multilocus sequence typing, Genome visualisation, Nucleic acid feature detection, Sequence motif recognition, Genome annotation |
2024-02-01 |
2024-10-15 |
6 |
True |
False |
True |
True |
isescan, upload1, Grouping1, plasmidfinder, integron_finder, tbl2gff3, jbrowse, tp_tail_tool, tp_replace_in_column, bakta |
UseGalaxy.eu, UseGalaxy.fr |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.org (Main) |
0 |
|
8485 |
11611 |
7.716667 |
0 |
|
Genome Annotation |
From small to large-scale genome comparison |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/hpc-for-lsgc/tutorial.html |
|
Multiple sequence alignment |
2021-02-08 |
2024-07-31 |
8 |
True |
True |
False |
True |
tp_awk_tool, gecko, clustalw, chromeister |
UseGalaxy.org.au, UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.cz |
0 |
|
3766211 |
8875935 |
9.766667 |
0 |
|
Genome Annotation |
Identification of AMR genes in an assembled bacterial genome |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/amr-gene-detection/tutorial.html |
Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Sequence analysis, Infectious disease, Antimicrobial resistance |
Genome annotation, Antimicrobial resistance prediction, Genome visualisation, Read mapping |
2024-01-23 |
2025-12-18 |
10 |
True |
False |
True |
True |
upload1, Grep1, tbl2gff3, jbrowse, bowtie2, staramr_search, bakta |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
UseGalaxy.org (Main) |
0 |
|
4294 |
5838 |
9.300000 |
0 |
|
Genome Annotation |
Genome annotation with Helixer |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/helixer/tutorial.html |
Biodiversity, Genomics, Zoology, Plant biology |
Gene prediction, Differential protein expression profiling, Sequence annotation, Genome annotation, Sequence assembly validation, Genome visualisation |
2024-08-21 |
2025-06-04 |
8 |
True |
False |
False |
True |
gffread, jcvi_gff_stats, jbrowse, omark, helixer, busco |
|
|
0 |
|
1671 |
1964 |
6.233333 |
0 |
|
Genome Annotation |
Masking repeats with RepeatMasker |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/repeatmasker/tutorial.html |
Sequence composition, complexity and repeats, Genomics |
Repeat sequence detection, RNA-Seq analysis, Mapping, Genome annotation, Editing |
2021-11-29 |
2025-06-03 |
22 |
True |
False |
True |
True |
repeatmodeler, red, repeatmasker_wrapper, bedtools_maskfastabed |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
11090 |
14026 |
4.133333 |
0 |
|
Genome Annotation |
Comparison of two annotation tools - Helixer and Braker3 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/comparison-braker-helixer-annotation/tutorial.html |
Sequence assembly, Genomics |
Differential protein expression profiling, Sequence alignment, Sequence assembly validation, Genome visualisation, Gene prediction, Sequence annotation, Genome annotation |
2025-06-20 |
2025-06-25 |
2 |
True |
False |
False |
True |
braker3, gffread, rna_star, jbrowse, omark, helixer, busco |
|
|
0 |
|
727 |
831 |
6.533333 |
0 |
|
Genome Annotation |
Secondary metabolite discovery |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/secondary-metabolite-discovery/tutorial.html |
|
Data handling, Service invocation, Gene prediction, Differential gene expression analysis, Sequence clustering |
2024-02-21 |
2024-09-27 |
2 |
True |
False |
False |
True |
ctb_np-likeness-calculator, edu.tamu.cpt.gff3.customGbkToGff, ncbi_acc_download, tp_awk_tool, ctb_silicos_qed, Remove beginning1, antismash, interactive_tool_jupyter_notebook, collapse_dataset, ctb_chemfp_mol2fps, bp_genbank2gff3, openbabel_remDuplicates, ctb_simsearch |
UseGalaxy.eu |
|
0 |
|
919 |
1138 |
3.466667 |
0 |
|
Genome Annotation |
Genome annotation with Braker3 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/braker3/tutorial.html |
Sequence assembly, Genomics, Biodiversity, Zoology, Plant biology |
Sequence annotation, Gene prediction, Differential protein expression profiling, Sequence alignment, Genome annotation, Sequence assembly validation, Genome visualisation |
2025-03-17 |
2025-06-20 |
4 |
True |
False |
False |
True |
braker3, gffread, rna_star, jbrowse, omark, fasta-stats, busco |
|
|
0 |
|
2160 |
2599 |
4.583333 |
0 |
|
Genome Annotation |
Introduction to Genome Annotation |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/introduction/slides.html |
|
|
2019-05-13 |
2025-04-23 |
5 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035973 |
2.100000 |
0 |
|
Genome Annotation |
Bacterial pangenomics |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-pangenomics/tutorial.html |
Genomics, Microbiology |
Essential dynamics, Rarefaction, Genome annotation, Sequence assembly |
2025-03-14 |
2025-03-14 |
1 |
True |
False |
False |
False |
upload1, ppanggolin_msa, ppanggolin_all |
UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
162 |
187 |
6.466667 |
0 |
|
Genome Annotation |
Creating an Official Gene Set |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/official-gene-set/tutorial.html |
|
|
2023-11-02 |
2024-02-29 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
53 |
59 |
15.600000 |
0 |
|
Genome Annotation |
Bacterial genome quality control |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-quality-control/tutorial.html |
Genomics, Microbiology |
Validation, Genome comparison, Sequence composition calculation, Statistical calculation, Sequence assembly validation, Sequencing quality control |
2025-03-14 |
2025-03-14 |
1 |
True |
False |
False |
False |
checkm2, drep_dereplicate, upload1 |
UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.cz |
0 |
|
195 |
233 |
7.733333 |
0 |
|
Genome Annotation |
Dataset construction for bacterial comparative genomics |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-comparative-genomics-dataset-construction/tutorial.html |
Genomics, Microbiology |
Data handling, Data retrieval, Sequence database search |
2025-03-14 |
2026-04-13 |
2 |
True |
False |
False |
False |
upload1, sort1, Remove beginning1, cat1, Cut1, datasets_download_genome, bg_uniq |
UseGalaxy.fr |
UseGalaxy.cz |
0 |
|
115 |
133 |
11.683333 |
0 |
|
Genome Annotation |
Genome Annotation |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/genome-annotation/tutorial.html |
|
|
2015-06-29 |
2025-06-10 |
19 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
35433 |
64330 |
2.016667 |
0 |
|
Genome Annotation |
Comparative gene analysis in unannotated genomes |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/gene-centric/tutorial.html |
Genomics, Gene and protein families, Sequence analysis, Phylogeny, Comparative genomics |
Sequence alignment analysis, Multiple sequence alignment, Database search, De-novo assembly, Transcriptome assembly, Coding region prediction, Phylogenetic tree generation |
2022-09-08 |
2025-06-03 |
10 |
True |
False |
False |
True |
bg_diamond_makedb, gops_intersect_1, bg_diamond_view, tp_split_on_column, bg_diamond, Filter1, cat1, Add_a_column1, orfipy, tab2fasta, rbc_mafft, collapse_dataset, Cut1, rapidnj, regexColumn1, join1 |
UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
2056 |
2827 |
9.833333 |
0 |
|
Genome Annotation |
Genome annotation with Funannotate |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/funannotate/tutorial.html |
Gene and protein families |
Sequence annotation, Protein feature detection, Query and retrieval, Sequence assembly validation, Genome visualisation, Homology-based gene prediction, Fold recognition, Sequence motif recognition, Information extraction, Formatting, Sequence alignment, Genome annotation |
2021-11-29 |
2025-06-10 |
26 |
True |
False |
True |
True |
rna_star, jbrowse, interproscan, picard_MergeSamFiles, busco, funannotate_compare, eggnog_mapper, aegean_parseval, funannotate_annotate, funannotate_predict |
UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz |
0 |
|
11973 |
16703 |
5.550000 |
0 |
|
Genome Annotation |
Genome annotation with Maker (short) |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker-short/tutorial.html |
|
Sequence annotation, Genome annotation, Sequence assembly validation, Genome visualisation |
2021-01-12 |
2024-02-29 |
3 |
True |
False |
False |
True |
gffread, jcvi_gff_stats, jbrowse, maker, fasta-stats, busco, maker_map_ids |
|
UseGalaxy.be |
0 |
|
4299 |
5978 |
9.133333 |
0 |
|
Genome Annotation |
Essential genes detection with Transposon insertion sequencing |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/tnseq/tutorial.html |
Genomics, Microbiology, Sequence analysis, Mobile genetic elements |
Primer removal, Sequence trimming, Transposon prediction, Read pre-processing |
2019-07-02 |
2024-03-18 |
12 |
True |
True |
False |
True |
transit_gumbel, __EXTRACT_DATASET__, tp_sort_header_tool, Filter1, Add_a_column1, gff_to_prot, Cut1, deeptools_bam_coverage, tp_easyjoin_tool, cutadapt, bowtie_wrapper, bg_find_subsequences |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.no |
UseGalaxy.cz, UseGalaxy.eu |
0 |
|
3819196 |
9051236 |
5.700000 |
0 |
|
Genome Annotation |
Genome annotation with Maker |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker/tutorial.html |
|
Operation, Sequence assembly validation, Genome visualisation, Gene prediction, Homology-based gene prediction, Ab-initio gene prediction, Sequence annotation, Genome annotation |
2018-09-24 |
2024-02-29 |
14 |
True |
False |
False |
True |
snap_training, gffread, jcvi_gff_stats, jbrowse, maker, augustus_training, fasta-stats, busco, maker_map_ids |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
14317 |
25057 |
4.366667 |
0 |
|
Genome Annotation |
Functional annotation of protein sequences |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/functional/tutorial.html |
Function analysis, Protein sites, features and motifs |
Sequence alignment analysis, Genome annotation, Homology-based gene prediction, Fold recognition, Protein feature detection, Sequence motif recognition, Information extraction, Query and retrieval |
2022-07-20 |
2025-06-03 |
12 |
True |
False |
False |
True |
ncbi_blastp_wrapper, eggnog_mapper, bg_diamond, interproscan |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.no |
0 |
|
5028 |
6606 |
6.166667 |
0 |
|
Genome Annotation |
Refining Genome Annotations with Apollo (eukaryotes) |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo-euk/tutorial.html |
Genomics |
Genome visualisation |
2022-08-22 |
2025-06-03 |
16 |
True |
False |
False |
False |
create_or_update, jbrowse, iframe |
UseGalaxy.no |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
0 |
|
1705 |
2499 |
9.800000 |
0 |
|
Genome Annotation |
Long non-coding RNAs (lncRNAs) annotation with FEELnc |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/lncrna/tutorial.html |
|
RNA-Seq analysis, Transcriptome assembly, Sequence annotation, Annotation, Classification |
2022-09-23 |
2024-09-18 |
11 |
True |
False |
True |
True |
feelnc, stringtie, gffread, Extract_features1, tp_cat |
|
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
2137 |
2820 |
9.250000 |
0 |
|
Genome Annotation |
CRISPR screen analysis |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/crispr-screen/tutorial.html |
|
Statistical calculation, Primer removal, Genetic variation analysis, Validation, Sequence composition calculation, Read pre-processing, Sequence trimming, Sequencing quality control |
2021-10-15 |
2024-08-08 |
12 |
True |
True |
True |
True |
mageck_test, volcanoplot, mageck_count, tp_awk_tool, multiqc, fastqc, cutadapt, mageck_mle |
UseGalaxy.org.au, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3420110 |
7673672 |
4.716667 |
0 |
|
Variant Analysis |
Microbial Variant Calling |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/microbial-variants/tutorial.html |
Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation |
Phylogenetic tree visualisation, Variant calling, Genome visualisation, Phylogenetic tree generation |
2018-02-26 |
2026-01-23 |
25 |
True |
False |
False |
True |
jbrowse, snippy |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
16133 |
25453 |
5.000000 |
0 |
|
Visualisation |
Genomic Data Visualisation with JBrowse |
https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse/tutorial.html |
|
Genome visualisation |
2020-01-10 |
2026-04-29 |
17 |
True |
True |
False |
False |
jbrowse |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
Galaxy@Pasteur, GalaxyTrakr, MISSISSIPPI, UseGalaxy.cz |
0 |
|
3815989 |
9043081 |
10.350000 |
0 |
|
Visualisation |
Genomic Data Visualisation with JBrowse2 |
https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse2/tutorial.html |
|
Pathway visualisation, Structure visualisation, Genome visualisation |
2026-04-29 |
2026-04-29 |
1 |
True |
False |
False |
False |
jbrowse2 |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@Pasteur, UseGalaxy.org.au |
0 |
|
156 |
160 |
3.133333 |
0 |
|
Imaging |
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools |
https://training.galaxyproject.org//topics/imaging/tutorials/electrophoresis-gel-bands-image-analysis/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2025-08-11 |
2025-11-26 |
3 |
True |
False |
False |
True |
ip_imageinfo, __EXTRACT_DATASET__, ip_split_image, ip_2d_feature_extraction, graphicsmagick_image_convert, interactive_tool_qupath, ip_points_to_label |
UseGalaxy.eu |
|
0 |
|
478 |
555 |
3.716667 |
0 |
|
Imaging |
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/parameter-tuning/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2025-04-28 |
2026-01-21 |
4 |
True |
False |
False |
True |
ip_filter_standard, param_value_from_file, tp_split_on_column, ip_threshold, ip_segmetrics, ip_histogram_equalization, collapse_dataset |
UseGalaxy.be |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
0 |
|
154 |
169 |
10.783333 |
0 |
|
Imaging |
Using BioImage.IO models for image analysis in Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/process-image-bioimageio/tutorial.html |
|
Image analysis |
2025-04-09 |
2026-02-05 |
9 |
True |
False |
False |
True |
ip_threshold, __EXTRACT_DATASET__, ip_overlay_images, ip_split_image, ip_binary_to_labelimage, image_math, bioimage_inference |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
272 |
319 |
6.833333 |
0 |
|
Imaging |
Where to start with bioimage analysis in Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/where-to-start-bioimaging-galaxy/tutorial.html |
|
Data handling, Quantification, Image annotation, Parsing, Formatting, Visualisation, Image analysis |
2026-02-17 |
2026-02-19 |
4 |
True |
False |
False |
False |
libcarna_render, interactive_tool_cellpose, ip_overlay_images, interactive_tool_ilastik, ip_split_image, bioimage_inference, ip_color_deconvolution, cellpose, ip_histogram_equalization, idr_download_by_ids, ip_threshold, ip_convertimage, bf2raw, ip_filter_standard, interactive_tool_cellprofiler, ip_imageinfo, interactive_tool_qupath, cp_overlay_outlines, cellposesam |
|
|
0 |
|
194 |
247 |
7.116667 |
0 |
|
Imaging |
Tracking of mitochondria and capturing mitoflashes |
https://training.galaxyproject.org//topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html |
|
Image analysis |
2024-11-20 |
2025-11-26 |
5 |
True |
False |
False |
True |
ip_points_association_nn, ip_curve_fitting, ip_spot_detection_2d |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
258 |
294 |
7.383333 |
0 |
|
Imaging |
End-to-End Tissue Microarray Image Analysis with Galaxy-ME |
https://training.galaxyproject.org//topics/imaging/tutorials/multiplex-tissue-imaging-TMA/tutorial.html |
|
|
2023-02-14 |
2025-11-26 |
9 |
True |
False |
False |
True |
squidpy_spatial, palom, gate_finder, rename_tiff_channels, basic_illumination, ip_convertimage, scanpy_compute_graph, mesmer, vitessce_spatial, quantification, ashlar, scimap_phenotyping, celesta, unet_coreograph, scimap_mcmicro_to_anndata |
|
|
0 |
|
1655 |
2216 |
4.666667 |
0 |
|
Imaging |
Nucleoli segmentation and feature extraction using CellProfiler |
https://training.galaxyproject.org//topics/imaging/tutorials/tutorial-CP/tutorial.html |
|
Parsing, Quantification, Image analysis |
2020-07-01 |
2025-11-26 |
12 |
True |
True |
False |
True |
cp_measure_image_intensity, cp_identify_primary_objects, cp_mask_image, cp_cellprofiler, cp_convert_objects_to_image, cp_enhance_or_suppress_features, cp_display_data_on_image, cp_measure_object_intensity, cp_save_images, cp_measure_image_area_occupied, cp_common, idr_download_by_ids, cp_export_to_spreadsheet, cp_relate_objects, cp_image_math, cp_gray_to_color, cp_measure_granularity, cp_measure_image_quality, cp_measure_texture, cp_measure_object_size_shape |
UseGalaxy.be, UseGalaxy.eu |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
3814575 |
9041769 |
5.516667 |
0 |
|
Imaging |
Training Custom YOLO Models for Segmentation of Bioimages |
https://training.galaxyproject.org//topics/imaging/tutorials/yolo-segmentation-training/tutorial.html |
|
Data handling, Visualisation, Image analysis, Image annotation |
2025-07-25 |
2025-11-26 |
7 |
True |
False |
False |
True |
unzip, yolo_training, graphicsmagick_image_convert, interactive_tool_anylabeling, ip_histogram_equalization, json2yolosegment |
UseGalaxy.eu |
|
0 |
|
409 |
481 |
2.716667 |
0 |
|
Imaging |
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/omero-suite/tutorial.html |
|
Image analysis |
2024-12-04 |
2026-04-28 |
9 |
True |
False |
False |
True |
param_value_from_file, split_file_to_collection, omero_get_value, omero_metadata_import, omero_import, omero_get_id, omero_roi_import, Convert characters1, omero_filter, tp_replace_in_line |
UseGalaxy.eu |
UseGalaxy.org (Main) |
0 |
|
330 |
444 |
7.966667 |
0 |
|
Imaging |
Object tracking using CellProfiler |
https://training.galaxyproject.org//topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html |
|
Parsing, Quantification, Image analysis |
2021-03-17 |
2025-11-26 |
11 |
True |
False |
False |
True |
cp_export_to_spreadsheet, unzip, cp_measure_object_intensity, cp_track_objects, cp_identify_primary_objects, cp_cellprofiler, cp_tile, cp_color_to_gray, cp_overlay_outlines, cp_measure_object_size_shape, cp_save_images, cp_common |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz |
0 |
|
2300 |
2844 |
4.400000 |
0 |
|
Imaging |
Voronoi segmentation |
https://training.galaxyproject.org//topics/imaging/tutorials/voronoi-segmentation/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2025-05-13 |
2026-02-20 |
8 |
True |
False |
False |
True |
ip_filter_standard, unzip, ip_count_objects, ip_imageinfo, ip_threshold, ip_convertimage, ip_2d_feature_extraction, ip_overlay_images, voronoi_tessellation, ip_binary_to_labelimage, colorize_labels, image_math, repeat_channels |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
472 |
655 |
6.266667 |
0 |
|
Imaging |
Execute a BiaPy workflow in Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/biapy/tutorial.html |
|
Image analysis |
2026-02-11 |
2026-02-17 |
2 |
True |
False |
False |
True |
libcarna_render, biapy, ip_overlay_images, __EXTRACT_DATASET__, ip_convertimage, ip_binary_to_labelimage |
UseGalaxy.eu |
|
0 |
|
49 |
57 |
13.366667 |
0 |
|
Imaging |
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines |
https://training.galaxyproject.org//topics/imaging/tutorials/2D-spot-detection/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2025-03-20 |
2025-11-26 |
5 |
True |
False |
False |
True |
unzip, ip_overlay_images, __EXTRACT_DATASET__, ip_histogram_equalization, ip_points_to_label, ip_binary_to_labelimage, idr_download_by_ids, ip_spot_detection_2d |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
|
0 |
|
279 |
331 |
5.516667 |
0 |
|
Imaging |
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM |
https://training.galaxyproject.org//topics/imaging/tutorials/iscc-suite/tutorial.html |
|
Image analysis |
2026-02-14 |
2026-02-16 |
2 |
True |
False |
False |
True |
param_value_from_file, iscc_sum_verify, ip_threshold, __EXTRACT_DATASET__, iscc_sum, ip_split_image, iscc_sum_similarity |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
40 |
40 |
37.066667 |
0 |
|
Imaging |
Segmentation of Anatomical Structures in Medical 3-D Images |
https://training.galaxyproject.org//topics/imaging/tutorials/dicom-anatomical-3d/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2026-02-26 |
2026-02-26 |
1 |
True |
False |
False |
True |
libcarna_render, query_tabular, compose_text_param, tp_replace_in_line, ip_2d_filter_segmentation_by_features, unzip, tp_sort_header_tool, tp_text_file_with_recurring_lines, ridge_filter_skimage, ip_threshold, ip_2d_feature_extraction, ip_binary_to_labelimage, ip_scale_image, param_value_from_file, highdicom_dicom2tiff, Add_a_column1, clip_image, add_line_to_file, Convert characters1, ip_concat_channels |
UseGalaxy.eu |
|
0 |
|
92 |
105 |
9.783333 |
0 |
|
Imaging |
Analyse HeLa fluorescence siRNA screen |
https://training.galaxyproject.org//topics/imaging/tutorials/hela-screen-analysis/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2019-08-13 |
2026-01-18 |
16 |
True |
False |
False |
True |
ip_filter_standard, unzip, ip_threshold, ip_2d_feature_extraction, collapse_dataset, ip_binary_to_labelimage, ip_2d_filter_segmentation_by_features |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.no |
0 |
|
856 |
1105 |
14.400000 |
0 |
|
Imaging |
Introduction to Image Analysis using Galaxy |
https://training.galaxyproject.org//topics/imaging/tutorials/imaging-introduction/tutorial.html |
|
Data handling, Image annotation, Visualisation, Image analysis |
2019-08-13 |
2026-01-18 |
18 |
True |
False |
False |
True |
ip_filter_standard, unzip, ip_count_objects, ip_imageinfo, ip_threshold, ip_overlay_images, ip_histogram_equalization, ip_binary_to_labelimage |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
|
0 |
|
2930 |
4042 |
8.900000 |
0 |
|
Introduction to Galaxy Analyses |
From peaks to genes |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html |
|
|
2016-03-29 |
2026-03-30 |
69 |
True |
False |
True |
True |
upload1, Grouping1, get_flanks1, gops_intersect_1, tp_sort_header_tool, Add_a_column1, CONVERTER_interval_to_bed_0, tp_tail_tool, Cut1, tp_replace_in_column |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
21304 |
34828 |
10.550000 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Genomics and Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-strands/tutorial.html |
|
|
2017-10-18 |
2026-05-17 |
43 |
True |
False |
True |
True |
gops_intersect_1, tp_sort_header_tool, Filter1, cat1, tp_cat, gene2exon1 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
MISSISSIPPI, UseGalaxy.no |
0 |
|
21201 |
33127 |
9.616667 |
0 |
|
Introduction to Galaxy Analyses |
How to reproduce published Galaxy analyses |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-reproduce/tutorial.html |
|
Visualisation |
2021-08-25 |
2024-10-15 |
12 |
True |
False |
False |
True |
upload1, Grouping1, datamash_ops, ggplot2_point, tp_sorted_uniq, Remove beginning1, csv_to_tabular, Cut1 |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
MISSISSIPPI, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
2379 |
3153 |
16.633333 |
0 |
|
Introduction to Galaxy Analyses |
Data Manipulation Olympics |
https://training.galaxyproject.org//topics/introduction/tutorials/data-manipulation-olympics/tutorial.html |
|
|
2022-07-20 |
2026-04-13 |
16 |
True |
False |
False |
True |
{{version_cut_columns}}, {{version_unique}}, Count1, {{version_cat}}, cat1, {{version_join}}, {{version_wc}}, regexColumn1, join1, {{version_sort}}, {{version_replace_text_column}}, tabular_to_csv, tp_split_on_column, tp_sort_header_tool, Filter1, {{version_cut_advanced}}, {{version_filter}}, tp_cat, wc_gnu, Grouping1, datamash_ops, Remove beginning1, {{version_split}}, Show beginning1, {{version_compute}}, Cut1, {{version_count}}, {{version_datamash}}, upload1, tp_sorted_uniq, {{version_replace_text_line}}, Add_a_column1, {{version_paste}}, {{version_select_first}}, {{version_remove_columns_by_header}}, {{version_remove_beginning}} |
|
|
0 |
|
6786 |
9771 |
11.250000 |
0 |
|
Introduction to Galaxy Analyses |
NGS data logistics |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-ngs-data-managment/tutorial.html |
|
Read mapping, Sequence contamination filtering, Generation, Data handling, Validation, Genome indexing, SNP detection, Sequence alignment, Formatting, Sequencing quality control |
2017-02-22 |
2026-01-06 |
40 |
True |
False |
True |
True |
bwa, lofreq_indelqual, lofreq_viterbi, multiqc, snpEff_build_gb, picard_MarkDuplicates, Filter1, fastp, samtools_stats, samtools_view, snpEff, fasterq_dump, collapse_dataset, lofreq_call, snpeff_sars_cov_2, bwa_mem2, bwa_mem, snpSift_extractFields |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz |
0 |
|
21431 |
36141 |
9.400000 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/introduction/slides.html |
|
|
2016-09-30 |
2025-09-23 |
6 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035979 |
2.100000 |
0 |
|
Introduction to Galaxy Analyses |
Options for using Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/options-for-using-galaxy/slides.html |
|
|
2017-05-24 |
2022-09-23 |
14 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035979 |
2.100000 |
0 |
|
Introduction to Galaxy Analyses |
Upload data to Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/dummy/tutorial.html |
|
|
2022-09-23 |
2023-11-09 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
523 |
595 |
10.200000 |
0 |
|
Introduction to Galaxy Analyses |
IGV Introduction |
https://training.galaxyproject.org//topics/introduction/tutorials/igv-introduction/tutorial.html |
|
|
2016-03-30 |
2023-02-17 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
8567 |
11941 |
5.350000 |
0 |
|
Introduction to Galaxy Analyses |
Best Practices for Citing Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-cite/tutorial.html |
|
|
2025-11-06 |
2026-02-24 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
268 |
293 |
6.550000 |
0 |
|
Introduction to Galaxy Analyses |
A short introduction to Galaxy |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-short/tutorial.html |
|
Sequence composition calculation, Sequencing quality control, Statistical calculation |
2018-08-27 |
2026-01-23 |
44 |
True |
True |
True |
True |
cshl_fastq_quality_filter, fastqc |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@Pasteur, GalaxyTrakr, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3870706 |
9129196 |
12.216667 |
0 |
|
Introduction to Galaxy Analyses |
Galaxy Basics for genomics |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101/tutorial.html |
|
Mapping |
2016-12-19 |
2025-04-22 |
68 |
True |
False |
True |
True |
upload1, datamash_ops, comp1, tp_sort_header_tool, tp_head_tool, bedtools_intersectbed |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.be, UseGalaxy.no |
0 |
|
54440 |
86844 |
8.550000 |
0 |
|
Introduction to Galaxy Analyses |
Galaxy Basics for everyone |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101-everyone/tutorial.html |
|
Visualisation |
2019-11-14 |
2025-11-06 |
35 |
True |
False |
True |
True |
upload1, Grouping1, datamash_ops, ggplot2_point, tp_sorted_uniq, Remove beginning1, csv_to_tabular, Cut1 |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.cz |
0 |
|
26962 |
42318 |
10.100000 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Galaxy as an RDM platform |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-rdm/tutorial.html |
|
Visualisation |
2026-03-19 |
2026-03-20 |
2 |
True |
False |
False |
True |
Summary_Statistics1, imagemagick_image_montage, column_remove_by_header, unzip, export_remote, Add_a_column1, ggplot2_histogram |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
226 |
284 |
11.900000 |
0 |
|
Introduction to Galaxy Analyses |
Very Short Introductions: QC |
https://training.galaxyproject.org//topics/introduction/tutorials/vsi_qc/tutorial.html |
|
Validation, Sequence contamination filtering, Sequencing quality control |
2024-03-26 |
2024-06-25 |
4 |
True |
False |
False |
False |
fastp, multiqc |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr, MISSISSIPPI, UseGalaxy.no |
0 |
|
413 |
484 |
6.083333 |
0 |
|
Materials Science |
Finding the muon stopping site with pymuon-suite in Galaxy |
https://training.galaxyproject.org//topics/materials-science/tutorials/muon-stopping-sites-muairss-uep/tutorial.html |
|
|
2024-01-22 |
2024-06-14 |
2 |
True |
False |
True |
True |
pm_muairss_read, pm_uep_opt |
UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.be |
0 |
|
359 |
450 |
4.366667 |
0 |
|
Metabolomics |
Molecular formula assignment and mass recalibration with MFAssignR package |
https://training.galaxyproject.org//topics/metabolomics/tutorials/mfassignr/tutorial.html |
|
Deisotoping, Visualisation, Annotation, Mass spectra calibration |
2025-05-19 |
2025-05-19 |
1 |
True |
False |
False |
True |
mfassignr_histnoise, mfassignr_isofiltr, mfassignr_snplot, mfassignr_mfassignCHO, mfassignr_recallist, mfassignr_recal, mfassignr_findRecalSeries, mfassignr_kmdnoise, mfassignr_mfassign |
|
|
0 |
|
271 |
320 |
4.433333 |
0 |
|
Metabolomics |
Predicting EI+ mass spectra with QCxMS |
https://training.galaxyproject.org//topics/metabolomics/tutorials/qcxms-predictions/tutorial.html |
|
|
2024-10-01 |
2024-10-01 |
1 |
True |
True |
False |
True |
ctb_im_conformers, param_value_from_file, split_file_to_collection, tp_cut_tool, xtb_molecular_optimization, qcxms_neutral_run, qcxms_getres, tp_cat, qcxms_production_run, openbabel_compound_convert, __FILTER_FAILED_DATASETS__ |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be |
0 |
|
1686703 |
3147341 |
5.900000 |
0 |
|
Metabolomics |
Mass spectrometry imaging: Finding differential analytes |
https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-finding-nglycans/tutorial.html |
|
|
2019-04-13 |
2023-11-09 |
9 |
True |
False |
False |
True |
Summary_Statistics1, Grep1, cardinal_mz_images, cardinal_quality_report, cardinal_segmentations, Filter1, cardinal_preprocessing, cardinal_classification, cardinal_combine, maldi_quant_peak_detection, maldi_quant_preprocessing, join_files_on_column_fuzzy |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
2177 |
3056 |
8.683333 |
0 |
|
Metabolomics |
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms) |
https://training.galaxyproject.org//topics/metabolomics/tutorials/gc_ms_with_xcms/tutorial.html |
|
Correlation, Chromatographic alignment, Data filtering, Peak detection, Standardisation and normalisation, Spectral library search, Mass spectrum visualisation, Chromatogram visualisation, Format validation, Clustering, Formatting, Filtering, Validation, Label-free quantification, Imputation |
2023-05-08 |
2023-11-09 |
5 |
True |
False |
False |
True |
abims_xcms_retcor, msconvert, waveica, abims_xcms_fillPeaks, riassigner, matchms_formatter, ramclustr, abims_xcms_xcmsSet, matchms_filtering, msnbase_readmsdata, ramclustr_define_experiment, xcms_merge, matchms_similarity, abims_xcms_group |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
3163 |
4018 |
4.016667 |
0 |
|
Metabolomics |
Mass spectrometry imaging: Examining the spatial distribution of analytes |
https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-analyte-distribution/tutorial.html |
|
|
2019-02-21 |
2024-10-15 |
18 |
True |
False |
False |
True |
cardinal_mz_images, cardinal_data_exporter, cardinal_quality_report, Filter1, cardinal_filtering, cardinal_spectra_plots |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3315 |
4639 |
9.000000 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS analysis |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms/tutorial.html |
|
Chromatographic alignment, Data filtering, Peak detection, Validation, Label-free quantification, Mass spectrum visualisation, Chromatogram visualisation |
2019-07-02 |
2025-09-21 |
13 |
True |
False |
False |
True |
xcms_export_samplemetadata, abims_xcms_retcor, abims_xcms_fillPeaks, generic_filter, Univariate, abims_xcms_xcmsSet, msnbase_readmsdata, quality_metrics, xcms_merge, xcms_plot_chromatogram, abims_CAMERA_annotateDiffreport, wsdl_hmdb, Batch_correction, abims_xcms_group |
|
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no |
0 |
|
13874 |
22362 |
3.633333 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS preprocessing with XCMS |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html |
|
Chromatographic alignment, Data filtering, Peak detection, Validation, Label-free quantification, Mass spectrum visualisation, Chromatogram visualisation |
2020-02-04 |
2024-10-15 |
14 |
True |
True |
False |
False |
xcms_export_samplemetadata, abims_xcms_retcor, abims_xcms_summary, intens_check, abims_xcms_fillPeaks, abims_xcms_xcmsSet, msnbase_readmsdata, idchoice, xcms_merge, xcms_plot_chromatogram, abims_CAMERA_annotateDiffreport, abims_xcms_group |
UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
3817193 |
9046282 |
7.150000 |
0 |
|
Metabolomics |
Introduction to Metabolomics |
https://training.galaxyproject.org//topics/metabolomics/tutorials/introduction/slides.html |
|
|
2018-11-20 |
2023-01-12 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035982 |
2.100000 |
0 |
|
Metabolomics |
Mass spectrometry: GC-MS analysis with the metaMS package |
https://training.galaxyproject.org//topics/metabolomics/tutorials/gcms/tutorial.html |
|
Chromatographic alignment, Data filtering, Peak detection, Validation, Label-free quantification, Mass spectrum visualisation, Chromatogram visualisation |
2021-09-22 |
2025-10-01 |
8 |
True |
False |
False |
False |
xcms_export_samplemetadata, abims_xcms_fillPeaks, abims_xcms_xcmsSet, metams_runGC, msnbase_readmsdata, xcms_merge, xcms_plot_chromatogram, abims_xcms_group |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.no |
0 |
|
1885 |
2849 |
3.600000 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS data processing |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-dataprocessing/tutorial.html |
|
|
2021-12-14 |
2024-10-15 |
8 |
True |
False |
False |
False |
intens_check, generic_filter, normalization, Multivariate, quality_metrics, Batch_correction |
UseGalaxy.fr |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
3270 |
4350 |
6.066667 |
0 |
|
Microbiome |
Introduction to Microbiome Analysis |
https://training.galaxyproject.org//topics/microbiome/tutorials/introduction/slides.html |
|
|
2017-06-22 |
2024-08-08 |
5 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035982 |
2.100000 |
0 |
|
Microbiome |
Analyses of metagenomics data - The global picture |
https://training.galaxyproject.org//topics/microbiome/tutorials/general-tutorial/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Phylogenetic analysis, Taxonomic classification, Sequencing quality control, Visualisation, Sequence read processing, Sequence clustering, DNA barcoding |
2017-06-22 |
2024-08-09 |
4 |
True |
False |
False |
True |
mothur_filter_seqs, humann2_renorm_table, mothur_pre_cluster, humann2, mothur_cluster_split, metaphlan2, mothur_align_seqs, mothur_screen_seqs, mothur_make_biom, mothur_make_group, mothur_classify_otu, mothur_make_shared, mothur_summary_seqs, taxonomy_krona_chart, krona-text, mothur_merge_files, metaphlan2krona, mothur_unique_seqs, mothur_classify_seqs, humann2_regroup_table, mothur_count_seqs |
|
UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.no |
0 |
|
11137 |
14970 |
5.733333 |
0 |
|
Microbiome |
Calculating α and β diversity from microbiome taxonomic data |
https://training.galaxyproject.org//topics/microbiome/tutorials/diversity/tutorial.html |
|
Visualisation, Aggregation |
2024-08-01 |
2025-06-17 |
7 |
True |
False |
True |
True |
krakentools_alpha_diversity, krakentools_beta_diversity |
Galaxy@Pasteur, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr |
0 |
|
9532 |
11416 |
3.733333 |
0 |
|
Microbiome |
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 |
https://training.galaxyproject.org//topics/microbiome/tutorials/lotus2-identifying-fungi/tutorial.html |
|
Sequence feature detection, DNA barcoding |
2024-09-30 |
2024-09-30 |
2 |
True |
False |
False |
True |
lotus2 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
973 |
1207 |
5.016667 |
0 |
|
Microbiome |
Metatranscriptomics analysis using microbiome RNA-seq data (short) |
https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics-short/tutorial.html |
Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis |
Sequence alignment analysis, Phylogenetic tree visualisation, Statistical calculation, Primer removal, Phylogenetic inference, Visualisation, Species frequency estimation, Sequence composition calculation, Sequence comparison, Phylogenetic tree editing, Phylogenetic analysis, Taxonomic classification, Conversion, Validation, Sequence similarity search, Read pre-processing, Sequence trimming, Sequencing quality control |
2020-02-13 |
2025-06-16 |
6 |
True |
False |
True |
True |
graphlan_annotate, tp_find_and_replace, graphlan, multiqc, bg_sortmerna, tp_sort_header_tool, export2graphlan, cutadapt, fastq_paired_end_interlacer, fastqc, Cut1, humann_renorm_table, humann, Grep1, taxonomy_krona_chart, metaphlan, combine_metaphlan2_humann2, humann_rename_table, humann_regroup_table, humann_unpack_pathways, humann_split_stratified_table |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
1036 |
1323 |
9.983333 |
0 |
|
Microbiome |
Clinical Metaproteomics 3: Verification |
https://training.galaxyproject.org//topics/microbiome/tutorials/clinical-mp-3-verification/tutorial.html |
|
|
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
Grouping1, Remove beginning1, query_tabular, Filter1, pepquery2, tp_cat, dbbuilder, Cut1, collapse_dataset, uniprotxml_downloader, fasta_merge_files_and_filter_unique_sequences |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.org (Main) |
0 |
|
0 |
0 |
0.000000 |
0 |
|
Microbiome |
Clinical Metaproteomics 1: Database-Generation |
https://training.galaxyproject.org//topics/microbiome/tutorials/clinical-mp-1-database-generation/tutorial.html |
|
Expression analysis, de Novo sequencing, Tag-based peptide identification, Protein identification, Target-Decoy |
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
metanovo, dbbuilder, fasta_merge_files_and_filter_unique_sequences, uniprotxml_downloader |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.org (Main) |
0 |
|
0 |
0 |
0.000000 |
0 |
|
Microbiome |
Taxonomic Profiling and Visualization of Metagenomic Data |
https://training.galaxyproject.org//topics/microbiome/tutorials/taxonomic-profiling/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis |
Taxonomic classification, Aggregation, Statistical calculation, Visualisation, Genome annotation |
2023-05-03 |
2026-05-11 |
8 |
True |
False |
True |
True |
taxonomy_krona_chart, interactive_tool_phinch, est_abundance, kraken_biom, metaphlan, __UNZIP_COLLECTION__, krakentools_kreport2krona, interactive_tool_pavian, kraken2 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
14694 |
19544 |
5.583333 |
0 |
|
Microbiome |
Antibiotic resistance detection |
https://training.galaxyproject.org//topics/microbiome/tutorials/plasmid-metagenomics-nanopore/tutorial.html |
Metagenomic sequencing, Public health and epidemiology, Metagenomics, Microbiology, Infectious disease, Sequence analysis, Antimicrobial resistance |
Scatter plot plotting, De-novo assembly, Sequence assembly visualisation, Sequence analysis, Genome assembly, Pairwise sequence alignment, Antimicrobial resistance prediction, Box-Whisker plot plotting, Aggregation, Mapping assembly |
2019-06-25 |
2024-06-14 |
4 |
True |
False |
True |
True |
PlasFlow, bandage_image, nanoplot, miniasm, unicycler, racon, staramr_search, gfa_to_fa, minimap2 |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
4171 |
5713 |
6.783333 |
0 |
|
Microbiome |
Clinical Metaproteomics 2: Discovery |
https://training.galaxyproject.org//topics/microbiome/tutorials/clinical-mp-2-discovery/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Filtering, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Formatting, Imputation |
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
Grep1, Grouping1, filter_tabular, msconvert, ident_params, Remove beginning1, query_tabular, Filter1, fasta2tab, maxquant, tp_cat, dbbuilder, Cut1, fasta_cli, peptide_shaker, fasta_merge_files_and_filter_unique_sequences, search_gui |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.fr |
0 |
|
0 |
0 |
0.000000 |
0 |
|
Microbiome |
16S Microbial analysis with Nanopore data |
https://training.galaxyproject.org//topics/microbiome/tutorials/nanopore-16S-metagenomics/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Sequence contamination filtering, Validation, Sequence composition calculation, Taxonomic classification, Statistical calculation, Visualisation, Sequencing quality control |
2020-11-24 |
2024-07-31 |
5 |
True |
False |
False |
True |
taxonomy_krona_chart, porechop, datamash_reverse, multiqc, Remove beginning1, fastqc, fastp, tp_replace_in_line, kraken2 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
10045 |
13873 |
5.433333 |
0 |
|
Microbiome |
Binning of metagenomic sequencing data |
https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-binning/tutorial.html |
Metagenomics, Sequence assembly |
Read mapping, Statistical calculation, Sequencing quality control, Sequence assembly validation, Read binning, Validation, Genome comparison, Sequence composition calculation, Sequence clustering, Genome annotation, Sequence assembly |
2023-12-05 |
2026-04-09 |
9 |
True |
False |
True |
True |
concoct, concoct_cut_up_fasta, __BUILD_LIST__, Fasta_to_Contig2Bin, concoct_coverage_table, das_tool, metabat2_jgi_summarize_bam_contig_depths, bowtie2, samtools_sort, drep_dereplicate, maxbin2, metabat2, concoct_merge_cut_up_clustering, semibin, binette, checkm_lineage_wf, concoct_extract_fasta_bins |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
GalaxyTrakr, UseGalaxy.org.au, UseGalaxy.org (Main) |
0 |
|
7203 |
8810 |
5.333333 |
0 |
|
Microbiome |
MGnify v5.0 Amplicon Pipeline |
https://training.galaxyproject.org//topics/microbiome/tutorials/mgnify-amplicon/tutorial.html |
Metagenomics, Taxonomy, Sequence analysis |
Sequence feature detection, Statistical calculation, Visualisation, Mapping, Analysis, Sequence composition calculation, Formatting, DNA barcoding, k-mer counting, Nucleic acid design, Alignment, Validation, Nucleic acid feature detection, Read pre-processing, Comparison, Sequence contamination filtering, Sequence trimming, Sequencing quality control |
2025-07-30 |
2025-11-18 |
3 |
True |
False |
False |
True |
tp_find_and_replace, filter_tabular, multiqc, __MERGE_COLLECTION__, infernal_cmsearch, ampvis2_heatmap, query_tabular, fastp, trimmomatic, fastq_dl, seqprep, collapse_dataset, fastq_filter, mapseq, CONVERTER_gz_to_uncompressed, mgnify_seqprep, __UNZIP_COLLECTION__, CONVERTER_uncompressed_to_gz, bedtools_maskfastabed, bedtools_getfastabed, wc_gnu, fastq_to_fasta_python, Grouping1, biom_convert, __FILTER_EMPTY_DATASETS__, tp_awk_tool, fastqc, cshl_fasta_formatter, cmsearch_deoverlap, prinseq, gops_concat_1, taxonomy_krona_chart, param_value_from_file, lotus2, collection_element_identifiers, ampvis2_load, Add_a_column1, __FILTER_FROM_FILE__, collection_column_join |
|
|
0 |
|
385 |
499 |
11.800000 |
0 |
|
Microbiome |
Remove contamination and host reads |
https://training.galaxyproject.org//topics/microbiome/tutorials/host-removal/tutorial.html |
|
Validation, Sequencing quality control, Read mapping |
2025-12-18 |
2026-05-12 |
3 |
True |
False |
True |
True |
bowtie2, __ZIP_COLLECTION__, multiqc |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr, MISSISSIPPI, UseGalaxy.no |
0 |
|
355 |
431 |
6.166667 |
0 |
|
Microbiome |
Clinical Metaproteomics 4: Quantitation |
https://training.galaxyproject.org//topics/microbiome/tutorials/clinical-mp-4-quantitation/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Imputation |
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
Grep1, maxquant, Grouping1, Cut1 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
0 |
0 |
0.000000 |
0 |
|
Microbiome |
Metatranscriptomics analysis using microbiome RNA-seq data |
https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics/tutorial.html |
Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis |
Sequence alignment analysis, Phylogenetic tree visualisation, Statistical calculation, Primer removal, Phylogenetic inference, Visualisation, Species frequency estimation, Sequence composition calculation, Sequence comparison, Phylogenetic tree editing, Phylogenetic analysis, Taxonomic classification, Conversion, Validation, Sequence similarity search, Aggregation, Read pre-processing, Sequence trimming, Sequencing quality control |
2019-11-21 |
2025-06-16 |
6 |
True |
True |
True |
True |
graphlan_annotate, tp_find_and_replace, graphlan, multiqc, bg_sortmerna, tp_sort_header_tool, export2graphlan, cutadapt, fastq_paired_end_interlacer, Grouping1, fastqc, combine_metaphlan_humann, Cut1, humann_renorm_table, humann, Grep1, taxonomy_krona_chart, metaphlan, humann_rename_table, humann_regroup_table, humann_unpack_pathways, humann_split_stratified_table |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.eu |
0 |
|
3818338 |
9046054 |
6.816667 |
0 |
|
Microbiome |
Building an amplicon sequence variant (ASV) table from 16S data using DADA2 |
https://training.galaxyproject.org//topics/microbiome/tutorials/dada-16S/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Analysis, Deposition, Visualisation, Variant calling, DNA barcoding |
2024-06-05 |
2026-04-13 |
12 |
True |
False |
True |
True |
dada2_plotQualityProfile, dada2_mergePairs, cat1, tp_replace_in_column, tp_replace_in_line, __UNZIP_COLLECTION__, tp_head_tool, phyloseq_from_dada2, Grouping1, dada2_makeSequenceTable, __SORTLIST__, dada2_removeBimeraDenovo, collection_element_identifiers, dada2_assignTaxonomyAddspecies, dada2_filterAndTrim, Add_a_column1, dada2_seqCounts, interactive_tool_phyloseq, dada2_dada, dada2_learnErrors |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
9282 |
13212 |
5.466667 |
0 |
|
Microbiome |
Clinical Metaproteomics 5: Data Interpretation |
https://training.galaxyproject.org//topics/microbiome/tutorials/clinical-mp-5-data-interpretation/tutorial.html |
|
Visualisation, Prediction and recognition |
2026-05-21 |
2026-05-21 |
0 |
True |
False |
True |
True |
Grep1, unipept, msstatstmt |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
0 |
0 |
0.000000 |
0 |
|
Microbiome |
Assembly of metagenomic sequencing data |
https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-assembly/tutorial.html |
Metagenomics, Sequence assembly |
Sequence alignment analysis, Statistical calculation, Primer removal, Genome assembly, Visualisation, Local alignment, Sequence composition calculation, Formatting, Variant calling, Sequence file editing, Sequence assembly visualisation, Read mapping, Sequence assembly validation, Data handling, Read pre-processing, Sequence contamination filtering, Sequence trimming, Sequencing quality control |
2022-12-05 |
2026-05-11 |
11 |
True |
False |
True |
True |
metaspades, collection_column_join, bandage_image, filter_tabular, coverm_contig, megahit_contig2fastg, bamtools, fastqc, bandage_info, megahit, bowtie2, tp_cat, quast, ngsutils_bam_filter, seqtk_subseq, random_lines1, cutadapt, bg_uniq |
|
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
0 |
|
5414 |
7491 |
10.150000 |
0 |
|
Microbiome |
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data |
https://training.galaxyproject.org//topics/microbiome/tutorials/metaplasmidome_query/tutorial.html |
Genomics, Microbiology, Sequence analysis, Mobile genetic elements |
Visualisation, Pairwise sequence alignment |
2025-01-07 |
2026-04-13 |
2 |
True |
False |
False |
True |
Grouping1, CONVERTER_fasta_to_tabular, sort1, histogram_rpy, tp_sorted_uniq, Add_a_column1, Filter1, cat1, MQoutputfilter, tab2fasta, tp_tail_tool, ggplot2_histogram, Cut1, tp_replace_in_column, minimap2, count_gff_features, join1, add_column_headers |
UseGalaxy.fr |
|
0 |
|
462 |
529 |
5.633333 |
0 |
|
Microbiome |
Identification of the micro-organisms in a beer using Nanopore sequencing |
https://training.galaxyproject.org//topics/microbiome/tutorials/beer-data-analysis/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis |
Sequence contamination filtering, Sequence composition calculation, Aggregation, Statistical calculation, Taxonomic classification, Visualisation, Sequencing quality control |
2022-09-29 |
2024-11-29 |
5 |
True |
False |
True |
True |
taxonomy_krona_chart, porechop, fastqc, Filter1, fastp, krakentools_kreport2krona, kraken2 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3449 |
5021 |
8.383333 |
0 |
|
Microbiome |
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition |
https://training.galaxyproject.org//topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.html |
Metagenomics, Public health and epidemiology, Taxonomy, Sequence assembly, Pathology, Sequence analysis |
Sequence alignment analysis, Statistical calculation, Genome assembly, Visualisation, Antimicrobial resistance prediction, Mapping, Phylogenetic tree generation (maximum likelihood and Bayesian methods), Box-Whisker plot plotting, Sequence composition calculation, Phylogenetic tree generation (from molecular sequences), Base-calling, Phylogenetic tree analysis, Variant calling, Sequence assembly, Phylogenetic tree reconstruction, Phylogenetic tree generation, Scatter plot plotting, De-novo assembly, Taxonomic classification, Sequence assembly visualisation, Pairwise sequence alignment, Multilocus sequence typing, Data handling, Validation, Multiple sequence alignment, Aggregation, Cross-assembly, Mapping assembly, Sequence contamination filtering, Sequencing quality control |
2023-01-26 |
2025-11-18 |
12 |
True |
False |
True |
True |
ggplot2_heatmap, Count1, Paste1, tp_find_and_replace, abricate, multiqc, fastp, table_compute, collapse_dataset, barchart_gnuplot, tp_replace_in_column, compose_text_param, minimap2, regexColumn1, mlst, __FILTER_FAILED_DATASETS__, CONVERTER_gz_to_uncompressed, __BUILD_LIST__, clair3, tp_split_on_column, krakentools_extract_kraken_reads, bamtools_split_mapped, samtools_fastx, tab2fasta, krakentools_kreport2krona, tp_head_tool, bedtools_getfastabed, fasta_merge_files_and_filter_unique_sequences, medaka_consensus_pipeline, Grouping1, split_file_to_collection, bcftools_consensus, tp_cut_tool, __FILTER_EMPTY_DATASETS__, samtools_coverage, snpSift_filter, Remove beginning1, fastqc, flye, fasta2tab, newick_display, regex1, Cut1, snpSift_extractFields, bcftools_norm, Grep1, tp_multijoin_tool, param_value_from_file, taxonomy_krona_chart, bandage_image, collection_element_identifiers, fasttree, nanoplot, tp_sorted_uniq, porechop, Add_a_column1, add_line_to_file, clustalw, samtools_depth, collection_column_join, kraken2 |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz |
0 |
|
5672 |
8267 |
8.566667 |
0 |
|
Microbiome |
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads |
https://training.galaxyproject.org//topics/microbiome/tutorials/mags-building/tutorial.html |
Metagenomics, Sequence assembly |
Data handling, Validation, Genome comparison, Sequence composition calculation, Statistical calculation, Genome annotation, Sequence assembly validation, Sequencing quality control |
2025-12-18 |
2026-05-18 |
6 |
True |
False |
True |
False |
Summary_Statistics1, Grouping1, multiqc, Remove beginning1, __EXTRACT_DATASET__, tp_sort_header_tool, checkm_lineage_wf, cat1, fasterq_dump, drep_dereplicate, collapse_dataset, Cut1, kmetashot, tp_replace_in_column, collection_column_join, join1, bakta |
UseGalaxy.eu |
|
0 |
|
1022 |
1315 |
5.666667 |
0 |
|
Microbiome |
Indexing and profiling microbes with MetaSBT |
https://training.galaxyproject.org//topics/microbiome/tutorials/metasbt/tutorial.html |
Microbial ecology, Taxonomy |
|
2025-08-25 |
2025-08-25 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
117 |
127 |
19.366667 |
0 |
|
Microbiome |
QIIME 2 Cancer Microbiome Intervention |
https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-cancer-microbiome-intervention/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
|
2024-02-12 |
2024-03-14 |
3 |
external |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
518 |
857 |
10.133333 |
0 |
|
Microbiome |
QIIME 2 Moving Pictures |
https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-moving-pictures/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
|
2024-03-14 |
2026-02-18 |
2 |
external |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
771 |
1141 |
7.250000 |
0 |
|
Microbiome |
16S Microbial Analysis with mothur (extended) |
https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Phylogenetic analysis, Taxonomic classification, Sequencing quality control, Visualisation, Phylogenetic tree generation, Sequence read processing, Phylogenetic tree analysis, Phylogenetic tree reconstruction, Sequence clustering, DNA barcoding |
2017-02-12 |
2025-12-18 |
5 |
True |
False |
False |
True |
mothur_dist_shared, mothur_filter_seqs, mothur_count_seqs, mothur_tree_shared, mothur_rarefaction_single, mothur_dist_seqs, mothur_summary_single, mothur_chimera_vsearch, XY_Plot_1, mothur_pre_cluster, mothur_cluster, mothur_cluster_split, mothur_align_seqs, mothur_sub_sample, mothur_screen_seqs, mothur_taxonomy_to_krona, mothur_make_biom, mothur_remove_groups, mothur_classify_otu, mothur_count_groups, mothur_make_shared, newick_display, mothur_get_groups, mothur_summary_seqs, mothur_venn, taxonomy_krona_chart, mothur_seq_error, mothur_remove_lineage, mothur_unique_seqs, mothur_classify_seqs, mothur_make_contigs, mothur_remove_seqs, mothur_heatmap_sim |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
14146 |
20833 |
5.016667 |
0 |
|
Microbiome |
16S Microbial Analysis with mothur (short) |
https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop-short/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Phylogenetic analysis, Taxonomic classification, Sequencing quality control, Visualisation, Phylogenetic tree generation, Sequence read processing, Phylogenetic tree analysis, Phylogenetic tree reconstruction, Sequence clustering, DNA barcoding |
2019-05-13 |
2025-12-18 |
6 |
True |
False |
True |
True |
mothur_dist_shared, mothur_filter_seqs, mothur_count_seqs, mothur_tree_shared, mothur_rarefaction_single, mothur_dist_seqs, mothur_summary_single, collapse_dataset, mothur_chimera_vsearch, XY_Plot_1, mothur_pre_cluster, mothur_cluster, mothur_cluster_split, mothur_sub_sample, mothur_screen_seqs, mothur_remove_groups, mothur_classify_otu, mothur_count_groups, mothur_make_shared, newick_display, mothur_summary_seqs, mothur_venn, mothur_remove_lineage, mothur_unique_seqs, mothur_classify_seqs, mothur_remove_seqs, mothur_heatmap_sim |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.fr |
0 |
|
6699 |
11212 |
7.700000 |
0 |
|
Variant Analysis |
Pox virus genome analysis from tiled-amplicon sequencing data |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/pox-tiled-amplicon/tutorial.html |
|
Sequence alignment analysis, Sequence analysis, Primer removal, Read mapping, Sequence alignment, Global alignment, Local alignment, Generation, Multiple sequence alignment, Genome indexing, Sequence contamination filtering, Sequencing quality control |
2023-05-15 |
2024-03-20 |
4 |
True |
False |
False |
True |
mimodd_info, qualimap_bamqc, fastp, fatovcf, compose_text_param, fasta_compute_length, samtools_view, rbc_mafft, samtools_merge, EMBOSS: maskseq51, datamash_ops, __ZIP_COLLECTION__, ivar_consensus, Cut1, fasta_regex_finder, upload1, Grep1, param_value_from_file, __APPLY_RULES__, Add_a_column1, ivar_trim, bwa_mem |
UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.org (Main) |
0 |
|
1233 |
1448 |
8.066667 |
0 |
|
Variant Analysis |
M. tuberculosis Variant Analysis |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/tb-variant-analysis/tutorial.html |
Genomics, Microbiology, Sequence assembly, Genetic variation, Public health and epidemiology, Infectious disease |
Sequence alignment analysis, Phylogenetic tree visualisation, Taxonomic classification, Sequence analysis, Statistical calculation, Sequence alignment, Global alignment, Genome visualisation, Local alignment, Antimicrobial resistance prediction, Validation, Sequence composition calculation, Sequence contamination filtering, Variant calling, Sequencing quality control, Phylogenetic tree generation |
2020-07-25 |
2026-01-06 |
32 |
True |
False |
True |
True |
kraken2, multiqc, jbrowse, qualimap_bamqc, fastp, samtools_stats, EMBOSS: seqret84, jvarkit_wgscoverageplotter, mosdepth, snippy, EMBOSS:%20seqret84, __FLATTEN__, tp_sed_tool, tb_variant_filter, bcftools_consensus, tp_awk_tool, fastqc, tb_profiler_profile, upload1, tbvcfreport |
|
|
0 |
|
8399 |
12705 |
7.716667 |
0 |
|
Variant Analysis |
Avian influenza viral strain analysis from gene segment sequencing data |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/aiv-analysis/tutorial.html |
|
Phylogenetic analysis, Sequence alignment analysis, Sequence file editing, De-novo assembly, Sequence analysis, Primer removal, Read mapping, Sequence alignment, Generation, Data retrieval, Data handling, Multiple sequence alignment, Genome indexing, Sequence contamination filtering, Sequencing quality control |
2022-11-21 |
2024-10-04 |
10 |
True |
False |
False |
False |
upload1, Grep1, tp_find_and_replace, iqtree, qualimap_bamqc, Show beginning1, fastp, ivar_consensus, samtools_view, rbc_mafft, bamtools_split_ref, collapse_dataset, seqtk_subseq, __RELABEL_FROM_FILE__, vapor, bwa_mem |
UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
2345 |
3330 |
8.033333 |
0 |
|
Sequence analysis |
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/tapscan-streptophyte-algae/tutorial.html |
|
Phylogenetic analysis, Multiple sequence alignment, Phylogenetic inference (from molecular sequences), Sequence analysis, Phylogenetic tree editing |
2025-03-26 |
2025-04-27 |
2 |
True |
False |
True |
True |
ete_treeviewer, trimal, iqtree, Remove beginning1, tapscan_classify, Filter1, quicktree, rbc_mafft, Cut1, filter_by_fasta_ids |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
404 |
529 |
12.033333 |
0 |
|
Transcriptomics |
Whole transcriptome analysis of Arabidopsis thaliana |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/mirna-target-finder/tutorial.html |
|
Gene expression analysis, Read mapping, Primer removal, RNA-Seq quantification, Visualisation, Validation, Sequence composition calculation, RNA-Seq analysis, Read pre-processing, Differential gene expression analysis, Sequence trimming, Sequencing quality control |
2021-04-08 |
2026-04-13 |
19 |
True |
True |
True |
True |
targetfinder, deseq2, sample_seqs, rbc_mirdeep2_mapper, sort1, multiqc, __MERGE_COLLECTION__, rbc_mirdeep2_quantifier, Filter1, cat1, Cut1, salmon, falco, filter_by_fasta_ids, trim_galore |
UseGalaxy.cz |
|
0 |
|
3672236 |
8534163 |
8.533333 |
0 |
|
Sequence analysis |
NCBI BLAST+ against the MAdLand |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-blast-against-the-madland/tutorial.html |
|
Sequence alignment analysis |
2023-01-16 |
2024-07-31 |
9 |
True |
False |
False |
False |
ncbi_blastp_wrapper, bg_diamond, ncbi_blastx_wrapper |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@Pasteur, IPK Galaxy Blast Suite, UseGalaxy.no |
0 |
|
1931 |
2446 |
10.350000 |
0 |
|
Single Cell |
Analysis of plant scRNA-Seq Data with Scanpy |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plant/tutorial.html |
|
Principal component visualisation, Differential gene expression analysis, Expression profile clustering |
2021-04-08 |
2025-02-13 |
7 |
True |
False |
True |
True |
scanpy_normalize, scanpy_cluster_reduce_dimension, anndata_import, scanpy_remove_confounders, anndata_manipulate, scanpy_filter, scanpy_inspect, scanpy_plot |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3149 |
3930 |
6.100000 |
0 |
|
Proteomics |
Statistical analysis of DIA data |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_MSstats/tutorial.html |
|
Tag-based peptide identification, Spectrum calculation, Differential protein expression profiling |
2020-12-02 |
2023-11-09 |
9 |
True |
False |
False |
True |
histogram_rpy, Grep1, Filter1, msstats |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
1514 |
2106 |
8.200000 |
0 |
|
Proteomics |
Peptide and Protein ID using SearchGUI and PeptideShaker |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-sg-ps/tutorial.html |
|
|
2017-06-12 |
2025-04-08 |
28 |
True |
False |
False |
True |
Grep1, PeakPickerHiRes, FileConverter, peptide_shaker, search_gui |
|
|
0 |
|
3411 |
5334 |
5.883333 |
0 |
|
Proteomics |
Clinical Metaproteomics 3: Verification |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-3-verification/tutorial.html |
|
|
2024-02-06 |
2025-08-10 |
7 |
True |
False |
True |
True |
Grouping1, Remove beginning1, query_tabular, Filter1, pepquery2, tp_cat, dbbuilder, Cut1, collapse_dataset, uniprotxml_downloader, fasta_merge_files_and_filter_unique_sequences |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.org (Main) |
0 |
|
246 |
314 |
26.600000 |
0 |
|
Proteomics |
EncyclopeDIA |
https://training.galaxyproject.org//topics/proteomics/tutorials/encyclopedia/tutorial.html |
|
Formatting, Filtering |
2021-06-21 |
2025-05-19 |
12 |
True |
False |
True |
True |
msconvert, encyclopedia_quantify, encyclopedia_searchtolib |
|
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
0 |
|
2116 |
2851 |
8.333333 |
0 |
|
Proteomics |
Peptide Library Data Analysis |
https://training.galaxyproject.org//topics/proteomics/tutorials/peptide-library-data-analysis/tutorial.html |
|
|
2021-01-22 |
2023-11-09 |
5 |
True |
False |
False |
True |
pdaug_peptide_sequence_analysis, pdaug_merge_dataframes, pdaug_addclasslabel, pdaug_peptide_data_access, pdaug_fishers_plot, pdaug_basic_plots, pdaug_sequence_property_based_descriptors, pdaug_tsvtofasta |
UseGalaxy.be |
|
0 |
|
804 |
1070 |
9.833333 |
0 |
|
Proteomics |
Biomarker candidate identification |
https://training.galaxyproject.org//topics/proteomics/tutorials/biomarker_selection/tutorial.html |
|
|
2019-06-13 |
2023-11-09 |
9 |
True |
False |
False |
True |
tp_cut_tool, prot_features, Jvenn, MQoutputfilter, retrieve_from_hpa, IDconverter, retr_pepatlas1, rna_abbased_data |
|
UseGalaxy.be, UseGalaxy.fr |
0 |
|
1880 |
2553 |
9.716667 |
0 |
|
Proteomics |
Machine Learning Modeling of Anticancer Peptides |
https://training.galaxyproject.org//topics/proteomics/tutorials/ml-modeling-of-anti-cancer-peptides/tutorial.html |
|
|
2021-01-22 |
2023-11-09 |
8 |
True |
False |
False |
True |
pdaug_merge_dataframes, pdaug_addclasslabel, pdaug_ml_models, pdaug_basic_plots, pdaug_sequence_property_based_descriptors |
UseGalaxy.be |
|
0 |
|
1112 |
1641 |
11.766667 |
0 |
|
Proteomics |
Clinical Metaproteomics 1: Database-Generation |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-1-database-generation/tutorial.html |
|
Expression analysis, de Novo sequencing, Tag-based peptide identification, Protein identification, Target-Decoy |
2024-02-06 |
2025-07-30 |
7 |
True |
False |
True |
True |
metanovo, dbbuilder, fasta_merge_files_and_filter_unique_sequences, uniprotxml_downloader |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.org (Main) |
0 |
|
697 |
1007 |
18.400000 |
0 |
|
Proteomics |
Label-free data analysis using MaxQuant |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-label-free/tutorial.html |
|
Protein quantification, Differential protein expression profiling, Statistical calculation, Tag-based peptide identification, Visualisation, Standardisation and normalisation, Heat map generation, Spectrum calculation, Principal component plotting, Clustering, Imputation |
2020-04-29 |
2025-05-21 |
14 |
True |
False |
False |
True |
Grep1, histogram_rpy, tp_sort_header_tool, Add_a_column1, Filter1, maxquant, msstats, Cut1 |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
20902 |
30367 |
3.716667 |
0 |
|
Proteomics |
Neoantigen 4: Variant Annotation |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-variant-annotation/tutorial.html |
|
|
2025-01-14 |
2025-12-03 |
5 |
True |
False |
False |
False |
column_regex_find_and_replace, query_tabular, tab2fasta, select, Convert characters1, pep_pointer, regexColumn1, cut |
|
|
0 |
|
165 |
184 |
8.750000 |
0 |
|
Proteomics |
Peptide and Protein Quantification via Stable Isotope Labelling (SIL) |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-quant-sil/tutorial.html |
|
|
2017-03-17 |
2025-04-08 |
32 |
True |
False |
False |
True |
Summary_Statistics1, Grep1, FidoAdapter, ProteinQuantifier, histogram_rpy, FileInfo, FalseDiscoveryRate, TextExporter, IDScoreSwitcher, IDMapper, XTandemAdapter, tp_tail_tool, MultiplexResolver, IDConflictResolver, PeptideIndexer, IDPosteriorErrorProbability, FeatureFinderMultiplex |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
1474 |
2015 |
8.966667 |
0 |
|
Proteomics |
Clinical Metaproteomics 2: Discovery |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-2-discovery/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Filtering, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Formatting, Imputation |
2024-02-06 |
2025-08-10 |
5 |
True |
False |
True |
True |
Grep1, Grouping1, filter_tabular, msconvert, ident_params, Remove beginning1, query_tabular, Filter1, fasta2tab, maxquant, tp_cat, dbbuilder, Cut1, fasta_cli, peptide_shaker, fasta_merge_files_and_filter_unique_sequences, search_gui |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.fr |
0 |
|
409 |
524 |
22.050000 |
0 |
|
Proteomics |
metaQuantome 1: Data creation |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-data-creation/tutorial.html |
Proteomics, Proteogenomics, Biodiversity, Taxonomy |
Prediction and recognition, Label-free quantification, Visualisation, Formatting, Filtering |
2020-10-16 |
2024-03-14 |
20 |
True |
False |
False |
True |
Grep1, msconvert, peptide_shaker, Remove beginning1, flashlfq, query_tabular, Filter1, unipept, regex1, tp_replace_in_column, Cut1, tp_replace_in_line, search_gui |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
937 |
1558 |
9.366667 |
0 |
|
Proteomics |
Single Cell Proteomics data analysis with bioconductor-scp |
https://training.galaxyproject.org//topics/proteomics/tutorials/bioconductor-scp/tutorial.html |
|
Expression analysis, Visualisation |
2025-02-07 |
2025-02-10 |
2 |
True |
False |
False |
False |
Grouping1, bioconductor_scp |
UseGalaxy.org.au, UseGalaxy.eu |
|
0 |
|
446 |
518 |
5.283333 |
0 |
|
Proteomics |
Proteogenomics 1: Database Creation |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbcreation/tutorial.html |
|
Sequence annotation, RNA-Seq analysis, Transcriptome assembly, Sequence alignment, Statistical calculation, Variant calling |
2018-11-20 |
2026-04-20 |
30 |
True |
False |
True |
True |
bed_to_protein_map, translate_bed, freebayes, filter_tabular, stringtie, cat_multi_datasets, hisat2, sqlite_to_tabular, query_tabular, gffcompare, fasta2tab, tab2fasta, tp_replace_in_column, custom_pro_db, gffcompare_to_bed, regexColumn1, fasta_merge_files_and_filter_unique_sequences |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
6370 |
10280 |
6.833333 |
0 |
|
Proteomics |
Clinical Metaproteomics 4: Quantitation |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-4-quantitation/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Imputation |
2024-02-06 |
2025-08-10 |
5 |
True |
False |
True |
True |
Grep1, maxquant, Grouping1, Cut1 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
234 |
300 |
28.100000 |
0 |
|
Proteomics |
Neoantigen 1a: Fusion-Database-Generation |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fusion-database-generation/tutorial.html |
|
Sequence alignment |
2025-01-14 |
2025-12-03 |
4 |
True |
False |
False |
False |
CONVERTER_gz_to_uncompressed, tp_awk_tool, rna_star, arriba_get_filters, query_tabular, tab2fasta, regex1, arriba |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
308 |
379 |
5.116667 |
0 |
|
Proteomics |
Peptide and Protein ID using OpenMS tools |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-oms/tutorial.html |
|
Formatting, Filtering |
2017-10-16 |
2025-04-08 |
32 |
True |
False |
False |
True |
Grep1, FidoAdapter, TextExporter, FalseDiscoveryRate, msconvert, PeakPickerHiRes, IDScoreSwitcher, XTandemAdapter, IDMerger, IDFilter, ConsensusID, PeptideIndexer, MSGFPlusAdapter, IDPosteriorErrorProbability, FileInfo |
|
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
3718 |
6157 |
7.716667 |
0 |
|
Proteomics |
Annotating a protein list identified by LC-MS/MS experiments |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteome_annotation/tutorial.html |
|
|
2019-09-12 |
2024-06-14 |
11 |
True |
False |
True |
True |
Jvenn, MQoutputfilter, reactome_analysis, retrieve_from_hpa, IDconverter, rna_abbased_data, cluter_profiler |
UseGalaxy.be |
UseGalaxy.fr |
0 |
|
3230 |
4642 |
7.983333 |
0 |
|
Proteomics |
Metaproteomics tutorial |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaproteomics/tutorial.html |
Proteomics, Proteogenomics, Biodiversity, Taxonomy |
Visualisation, Prediction and recognition |
2017-06-28 |
2026-05-11 |
42 |
True |
False |
True |
True |
sqlite_to_tabular, query_tabular, unipept, peptide_shaker, search_gui |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3109 |
4879 |
9.833333 |
0 |
|
Proteomics |
Neoantigen 3: PepQuery2 Verification |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-peptide-verification/tutorial.html |
|
Formatting, Filtering |
2025-01-14 |
2025-12-03 |
4 |
True |
False |
False |
False |
msconvert, ncbi_blastp_wrapper, query_tabular, pepquery2, tab2fasta |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz |
0 |
|
148 |
160 |
9.733333 |
0 |
|
Proteomics |
Neoantigen 2: Database merge and FragPipe discovery |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fragpipe-discovery/tutorial.html |
|
|
2025-01-14 |
2025-12-03 |
4 |
True |
False |
False |
False |
Grep1, Remove beginning1, query_tabular, fragpipe_manifest_generator, validate_fasta_database, collapse_dataset, fasta_merge_files_and_filter_unique_sequences, fragpipe |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
369 |
425 |
4.133333 |
0 |
|
Proteomics |
Mass spectrometry imaging: Loading and exploring MSI data |
https://training.galaxyproject.org//topics/proteomics/tutorials/mass-spectrometry-imaging-loading-exploring-data/tutorial.html |
Proteomics |
|
2018-11-27 |
2025-04-08 |
18 |
True |
False |
False |
True |
cardinal_data_exporter, Grep1, tp_sort_header_tool, cardinal_quality_report |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3000 |
4514 |
5.516667 |
0 |
|
Proteomics |
Neoantigen 5b: IEDB binding Validated Neopeptides |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-hla-binding-novel-peptides/tutorial.html |
|
|
2025-01-14 |
2025-12-03 |
5 |
True |
False |
False |
False |
table_compute, iedb_api, query_tabular, Filter1, fasta_to_tabular |
|
|
0 |
|
145 |
154 |
6.233333 |
0 |
|
Proteomics |
Clinical Metaproteomics 5: Data Interpretation |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-5-data-interpretation/tutorial.html |
|
Visualisation, Prediction and recognition |
2024-02-06 |
2025-08-10 |
4 |
True |
False |
True |
True |
Grep1, unipept, msstatstmt |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
354 |
448 |
20.350000 |
0 |
|
Proteomics |
Multiomics data analysis using MultiGSEA |
https://training.galaxyproject.org//topics/proteomics/tutorials/multiGSEA-tutorial/tutorial.html |
|
Pathway analysis, Aggregation, Gene-set enrichment analysis |
2025-03-10 |
2025-03-11 |
2 |
True |
False |
False |
True |
tp_grep_tool, Filter1, multigsea |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
528 |
585 |
5.550000 |
0 |
|
Proteomics |
MaxQuant and MSstats for the analysis of label-free data |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-dda-lfq/tutorial.html |
|
Protein quantification, Differential protein expression profiling, Statistical calculation, Tag-based peptide identification, Visualisation, Standardisation and normalisation, Heat map generation, Spectrum calculation, Principal component plotting, Clustering, Imputation |
2021-02-17 |
2025-09-22 |
19 |
True |
False |
True |
True |
Summary_Statistics1, Grep1, datamash_ops, ggplot2_heatmap2, uniprot, Filter1, fasta2tab, maxquant, msstats, Cut1, tp_replace_in_column, tp_easyjoin_tool |
|
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
9201 |
14597 |
6.216667 |
0 |
|
Proteomics |
metaQuantome 3: Taxonomy |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-taxonomy/tutorial.html |
Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics, Taxonomy |
Statistical inference, Functional clustering, Visualisation, Differential protein expression analysis, Principal component visualisation, Heat map generation, Quantification, Query and retrieval, Filtering, Indexing |
2020-10-29 |
2024-03-15 |
14 |
True |
False |
False |
True |
metaquantome_viz, metaquantome_expand, metaquantome_db, metaquantome_sample, metaquantome_filter, metaquantome_stat |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
485 |
626 |
14.650000 |
0 |
|
Proteomics |
MaxQuant and MSstats for the analysis of TMT data |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Imputation |
2021-08-13 |
2025-01-08 |
11 |
True |
False |
False |
True |
maxquant, msstatstmt |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.org (Main) |
0 |
|
4515 |
6017 |
3.900000 |
0 |
|
Proteomics |
Proteogenomics 2: Database Search |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbsearch/tutorial.html |
|
Peptide database search, Conversion |
2018-11-20 |
2026-04-22 |
25 |
True |
False |
True |
True |
mz_to_sqlite, ident_params, query_tabular, tab2fasta, peptide_shaker, search_gui |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
1694 |
2485 |
12.166667 |
0 |
|
Proteomics |
Secretome Prediction |
https://training.galaxyproject.org//topics/proteomics/tutorials/secretome-prediction/tutorial.html |
|
|
2017-04-13 |
2025-04-08 |
15 |
True |
False |
False |
True |
Grep1, term_id_vs_term_name, tp_cut_tool, comp1, tp_sorted_uniq, uniprot, Filter1, get_subontology_from, Convert characters1, tp_easyjoin_tool, wolf_psort, bg_uniq |
|
|
0 |
|
692 |
1012 |
8.250000 |
0 |
|
Proteomics |
Protein FASTA Database Handling |
https://training.galaxyproject.org//topics/proteomics/tutorials/database-handling/tutorial.html |
Proteomics |
|
2017-02-14 |
2025-04-08 |
30 |
True |
False |
False |
True |
DecoyDatabase, fasta2tab, addValue, tab2fasta, dbbuilder, fasta_merge_files_and_filter_unique_sequences |
UseGalaxy.org.au, UseGalaxy.eu |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
5029 |
7896 |
7.983333 |
0 |
|
Proteomics |
Proteogenomics 3: Novel peptide analysis |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-novel-peptide-analysis/tutorial.html |
|
|
2018-11-20 |
2025-05-15 |
20 |
True |
False |
True |
True |
ncbi_blastp_wrapper, pep_pointer, peptide_genomic_coordinate, query_tabular |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
1853 |
2652 |
13.233333 |
0 |
|
Proteomics |
Detection and quantitation of N-termini (degradomics) via N-TAILS |
https://training.galaxyproject.org//topics/proteomics/tutorials/ntails/tutorial.html |
Proteomics |
|
2017-02-14 |
2025-04-08 |
16 |
True |
False |
False |
True |
HighResPrecursorMassCorrector, FalseDiscoveryRate, IDMapper, IDMerger, FileMerger, IDFilter, ConsensusID, IDConflictResolver, MSGFPlusAdapter, MzTabExporter, PeptideIndexer, FileFilter, FeatureFinderMultiplex |
|
|
0 |
|
949 |
1278 |
6.050000 |
0 |
|
Proteomics |
Neoantigen 5a: Predicting HLA Binding |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-predicting-hla-binding/tutorial.html |
|
Genetic variation analysis, Read mapping |
2025-01-14 |
2025-12-03 |
4 |
True |
False |
False |
False |
tp_awk_tool, optitype, query_tabular, seq2hla |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
156 |
168 |
6.650000 |
0 |
|
Proteomics |
metaQuantome 2: Function |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-function/tutorial.html |
Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics |
Statistical inference, Functional clustering, Visualisation, Differential protein expression analysis, Principal component visualisation, Heat map generation, Quantification, Query and retrieval, Filtering, Indexing |
2020-10-29 |
2024-03-15 |
14 |
True |
False |
False |
True |
metaquantome_viz, metaquantome_expand, metaquantome_db, metaquantome_sample, metaquantome_filter, metaquantome_stat |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
452 |
626 |
15.466667 |
0 |
|
Proteomics |
DIA Analysis using OpenSwathWorkflow |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_OSW/tutorial.html |
|
Formatting, Filtering |
2020-12-02 |
2025-05-20 |
12 |
True |
False |
False |
True |
Grep1, pyprophet_merge, msconvert, pyprophet_peptide, OpenSwathWorkflow, pyprophet_score, pyprophet_protein, pyprophet_export |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
3454 |
4848 |
8.116667 |
0 |
|
Proteomics |
Library Generation for DIA Analysis |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_lib_OSW/tutorial.html |
|
Protein quantification, Statistical calculation, Visualisation, Standardisation and normalisation, Heat map generation, Principal component plotting, Clustering, Imputation |
2020-12-02 |
2025-06-02 |
12 |
True |
False |
False |
True |
diapysef, TargetedFileConverter, OpenSwathDecoyGenerator, Filter1, maxquant, OpenSwathAssayGenerator |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.no |
0 |
|
4853 |
6286 |
4.266667 |
0 |
|
Proteomics |
Neoantigen 1b: Non-Reference-Database-Generation |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-non-reference-database-generation/tutorial.html |
|
Sequence annotation, RNA-Seq analysis, Statistical calculation, Sequence alignment, Variant calling, Transcriptome assembly |
2025-01-14 |
2025-12-03 |
6 |
True |
False |
False |
False |
bed_to_protein_map, translate_bed, freebayes, CONVERTER_gz_to_uncompressed, concatenate, sqlite_to_tabular, column_regex_find_and_replace, hisat2, stringtie, gffcompare, fasta2tab, tab2fasta, custom_pro_db, gffcompare_to_bed, regexColumn1, fasta_merge_files_and_filter_unique_sequences |
|
|
0 |
|
196 |
215 |
5.966667 |
0 |
|
Proteomics |
Introduction to proteomics, protein identification, quantification and statistical modelling |
https://training.galaxyproject.org//topics/proteomics/tutorials/introduction/slides.html |
|
|
2017-12-01 |
2024-08-08 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035993 |
2.100000 |
0 |
|
Proteomics |
Label-free versus Labelled - How to Choose Your Quantitation Method |
https://training.galaxyproject.org//topics/proteomics/tutorials/labelfree-vs-labelled/tutorial.html |
|
|
2017-03-17 |
2025-05-27 |
18 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
7818 |
12539 |
2.566667 |
0 |
|
Sequence analysis |
Mapping |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/mapping/tutorial.html |
Mapping |
Sequence alignment analysis, Statistical calculation, Read mapping, Primer removal, Genome visualisation, Data handling, Validation, Sequence composition calculation, Read pre-processing, Sequence trimming, Sequencing quality control |
2016-10-04 |
2026-03-30 |
46 |
True |
True |
True |
True |
bamFilter, multiqc, jbrowse, fastqc, samtools_stats, bowtie2, __FLATTEN__, trim_galore |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no |
0 |
|
3880202 |
9151262 |
9.500000 |
0 |
|
Sequence analysis |
Screening assembled genomes for contamination using NCBI FCS |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-fcs/tutorial.html |
|
Sequence trimming, Sequence assembly validation, Sequence contamination filtering |
2024-04-16 |
2024-04-16 |
2 |
True |
False |
False |
True |
ncbi_fcs_adaptor, ncbi_fcs_gx |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
2387 |
3169 |
3.683333 |
0 |
|
Sequence analysis |
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/viral_primer_design/tutorial.html |
|
Sequence alignment analysis, Local alignment, PCR primer design, Multiple sequence alignment, Sequence analysis, Sequence alignment, Global alignment |
2025-03-20 |
2025-11-20 |
3 |
True |
False |
False |
True |
EMBOSS: degapseq20, split_file_to_collection, varvamp, fasta_compute_length, rbc_mafft, ncbi_makeblastdb |
UseGalaxy.be, UseGalaxy.eu |
|
0 |
|
1116 |
1343 |
3.150000 |
0 |
|
Sequence analysis |
Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.html |
Whole genome sequencing, Genomics, Microbiology, Microbial ecology |
Expression analysis, Taxonomic classification, Statistical calculation, Read mapping, Visualisation, Cross-assembly, Sequence contamination filtering, Sequencing quality control |
2024-07-15 |
2025-12-18 |
5 |
True |
False |
True |
True |
upload1, est_abundance, fastp, falco, recentrifuge, kraken2 |
GalaxyTrakr, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
2057 |
2730 |
10.500000 |
0 |
|
Sequence analysis |
Quality Control |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-control/tutorial.html |
|
Scatter plot plotting, Statistical calculation, Primer removal, Validation, Box-Whisker plot plotting, Sequence composition calculation, Read pre-processing, Sequence trimming, Sequencing quality control |
2016-10-04 |
2026-03-30 |
49 |
True |
True |
True |
True |
pycoqc, nanoplot, multiqc, fastqc, fastqe, cutadapt |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
Galaxy@AuBi, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
3925303 |
9241524 |
9.066667 |
0 |
|
Sequence analysis |
Clean and manage Sanger sequences from raw files to aligned consensus |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.html |
|
Phylogenetic analysis, Sequence file editing, Taxonomic classification, Visualisation, Data handling, Sequence read processing, Demultiplexing, Sequence clustering, Sequencing quality control, DNA barcoding |
2024-01-08 |
2024-03-05 |
2 |
True |
False |
False |
True |
aligned_to_consensus, unzip, qiime_align_seqs, tab2fasta, filter_by_fasta_ids, seqtk_mergepe, ncbi_blastn_wrapper, mothur_degap_seqs, __SORTLIST__, ab1_fastq_converter, regex1, seqtk_trimfq, __FILTER_FROM_FILE__, collection_element_identifiers, mothur_merge_files, fastq_groomer, fastq_to_tabular, cshl_fastq_to_fasta, cshl_fastx_reverse_complement, fastq_masker_by_quality |
UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
|
0 |
|
4022 |
4984 |
6.300000 |
0 |
|
Single Cell |
Single-cell quality control with scater |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scater-qc/tutorial.html |
|
Sequence visualisation, Read pre-processing, Sequencing quality control |
2019-10-23 |
2025-02-14 |
6 |
True |
False |
False |
True |
scater_filter, scater_plot_dist_scatter, scater_create_qcmetric_ready_sce, scater_plot_pca |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no |
UseGalaxy.cz |
0 |
|
769 |
861 |
5.566667 |
0 |
|
Single Cell |
Generating a single cell matrix using Alevin |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin/tutorial.html |
|
RNA-Seq quantification, Sequence composition calculation, Gene expression analysis |
2021-03-03 |
2025-11-18 |
25 |
True |
False |
True |
True |
sceasy_convert, _dropletBarcodePlot, _salmon_kallisto_mtx_to_10x, anndata_manipulate, anndata_inspect, Cut1, alevin, _ensembl_gtf2gene_list, join1, dropletutils_read_10x, dropletutils_empty_drops |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
3782 |
5707 |
10.716667 |
0 |
|
Single Cell |
GO Enrichment Analysis on Single-Cell RNA-Seq Data |
https://training.galaxyproject.org//topics/single-cell/tutorials/GO-enrichment/tutorial.html |
|
Gene-set enrichment analysis |
2024-09-17 |
2025-04-08 |
8 |
True |
True |
False |
True |
gprofiler_gost, tp_split_on_column, goenrichment, Cut1 |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
|
0 |
|
1712593 |
3210319 |
5.550000 |
0 |
|
Single Cell |
Pseudobulk Analysis with Decoupler and EdgeR |
https://training.galaxyproject.org//topics/single-cell/tutorials/pseudobulk-analysis/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2025-02-12 |
2025-05-09 |
8 |
True |
False |
True |
True |
volcanoplot, column_remove_by_header, decoupler_pseudobulk, tp_awk_tool, __EXTRACT_DATASET__, edger, anndata_manipulate, anndata_inspect, scanpy_filter, tp_replace_in_column, tp_replace_in_line |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
2267 |
2577 |
2.716667 |
0 |
|
Single Cell |
Converting between common single cell data formats |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-ingest/tutorial.html |
|
Loading, Community profiling |
2024-02-13 |
2025-03-11 |
4 |
True |
False |
False |
True |
sceasy_convert, tp_cut_tool, scanpy_filter_cells, dropletutils, seurat_read10x, Filter1, anndata_ops, fastq_to_tabular, tp_tail_tool, monocle3_create, anndata_inspect, Cut1, datamash_transpose, regexColumn1, join1, dropletutils_read_10x, tabular_to_fastq |
|
UseGalaxy.org (Main) |
0 |
|
3061 |
3589 |
3.800000 |
0 |
|
Single Cell |
Bulk RNA Deconvolution with MuSiC |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music/tutorial.html |
|
|
2022-02-11 |
2025-02-14 |
10 |
True |
False |
True |
True |
music_construct_eset, music_inspect_eset, music_deconvolution |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
4443 |
5552 |
3.950000 |
0 |
|
Single Cell |
Pre-processing of Single-Cell RNA Data |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing/tutorial.html |
|
Data handling, Validation, Sequence alignment analysis, RNA-Seq quantification, Read summarisation, Sequence alignment, Sequencing quality control |
2019-02-22 |
2025-04-08 |
5 |
True |
True |
False |
True |
bamFilter, tp_sed_tool, multiqc, rna_star, umi_tools_extract, umi_tools_count, samtools_stats, __FLATTEN__, featurecounts, collection_column_join |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
3817433 |
9044876 |
8.550000 |
0 |
|
Single Cell |
Pre-processing of 10X Single-Cell ATAC-seq Datasets |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-preprocessing-tenx/tutorial.html |
|
Peak calling, Gene regulatory network analysis, Statistical calculation, Read mapping, Visualisation, Mapping, Generation, Differential gene expression analysis, Genome indexing, Principal component visualisation, Sequence composition calculation, Enrichment analysis, Expression profile clustering, Sequence alignment, Sequencing quality control, Imputation |
2023-04-24 |
2025-10-16 |
10 |
True |
False |
False |
True |
tp_sorted_uniq, fastqc, episcanpy_preprocess, sinto_fragments, macs2_callpeak, sinto_barcode, anndata_inspect, falco, bedtools_sortbed, bwa_mem, scanpy_plot, episcanpy_build_matrix |
UseGalaxy.org.au, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz |
0 |
|
6562 |
7712 |
2.416667 |
0 |
|
Single Cell |
Pre-processing of 10X Single-Cell RNA Datasets |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing-tenx/tutorial.html |
|
Validation, Loading, Sequence alignment, Sequencing quality control, Community profiling |
2019-09-11 |
2025-04-29 |
13 |
True |
False |
True |
True |
multiqc, rna_starsolo, dropletutils |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.fr, UseGalaxy.no |
0 |
|
13961 |
18057 |
5.750000 |
0 |
|
Single Cell |
An introduction to scRNA-seq data analysis |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-intro/slides.html |
|
|
2021-01-29 |
2025-02-13 |
8 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3778115 |
8921952 |
2.083333 |
0 |
|
Single Cell |
Generating a single cell matrix using Alevin and combining datasets (bash + R) |
https://training.galaxyproject.org//topics/single-cell/tutorials/alevin-commandline/tutorial.html |
|
|
2023-12-08 |
2025-04-22 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
748 |
998 |
9.883333 |
0 |
|
Single Cell |
Understanding Barcodes |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-umis/tutorial.html |
|
Sequence composition calculation, Sequencing quality control, Statistical calculation |
2019-02-20 |
2025-02-14 |
11 |
True |
False |
True |
True |
seq_filter_by_id, fastqc, umi_tools_extract |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, UseGalaxy.no |
0 |
|
6871 |
8526 |
4.983333 |
0 |
|
Single Cell |
Removing the effects of the cell cycle |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_cell-cycle/tutorial.html |
|
Principal component visualisation, Differential gene expression analysis, Expression profile clustering |
2023-01-25 |
2026-04-13 |
15 |
True |
False |
False |
True |
table_compute, sort1, scanpy_cluster_reduce_dimension, scanpy_regress_variable, cat1, addValue, anndata_manipulate, anndata_inspect, tp_easyjoin_tool, scanpy_inspect, scanpy_plot |
|
|
0 |
|
2350 |
2756 |
3.050000 |
0 |
|
Single Cell |
Comparing inferred cell compositions using MuSiC deconvolution |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-4-compare/tutorial.html |
|
|
2023-01-20 |
2025-02-13 |
10 |
True |
False |
False |
True |
music_compare |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
363 |
513 |
11.716667 |
0 |
|
Single Cell |
Single-cell ATAC-seq standard processing with SnapATAC2 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-standard-processing-snapatac2/tutorial.html |
|
Essential dynamics, Dimensionality reduction, Read mapping, Generation, Differential gene expression analysis, Principal component visualisation, Gene expression profiling, Expression profile clustering, Sequence alignment, Genome indexing |
2024-07-11 |
2025-07-02 |
5 |
True |
False |
False |
True |
scanpy_normalize, anndata_ops, fasta_compute_length, anndata_manipulate, scanpy_inspect, snapatac2_peaks_and_motif, replace_column_with_key_value_file, snapatac2_preprocessing, anndata_inspect, scanpy_filter, Cut1, snapatac2_plotting, snapatac2_clustering, bwa_mem, scanpy_plot |
|
|
0 |
|
2137 |
2518 |
2.883333 |
0 |
|
Single Cell |
Combining single cell datasets after pre-processing |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial.html |
|
|
2022-09-08 |
2025-11-18 |
23 |
True |
False |
True |
True |
Paste1, anndata_ops, anndata_manipulate, anndata_inspect, tp_replace_in_column, Cut1 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.org (Main) |
0 |
|
2723 |
3798 |
10.466667 |
0 |
|
Single Cell |
Filter, plot, and explore single cell RNA-seq data with Seurat (R) |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio/tutorial.html |
|
|
2023-10-02 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3791 |
4295 |
3.133333 |
0 |
|
Single Cell |
Importing files from public atlases |
https://training.galaxyproject.org//topics/single-cell/tutorials/EBI-retrieval/tutorial.html |
|
|
2023-11-14 |
2025-03-11 |
8 |
True |
False |
True |
True |
sceasy_convert, tp_find_and_replace, scanpy_read_10x, hca_matrix_downloader, seurat_read10x, anndata_ops, tp_grep_tool, retrieve_scxa, regexColumn1 |
|
|
0 |
|
671 |
865 |
11.883333 |
0 |
|
Single Cell |
Clustering 3K PBMCs with Scanpy |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scanpy-pbmc3k/tutorial.html |
|
Principal component visualisation, Differential gene expression analysis, Expression profile clustering |
2019-12-19 |
2026-05-05 |
17 |
True |
True |
True |
True |
scanpy_normalize, datamash_ops, scanpy_cluster_reduce_dimension, anndata_import, scanpy_remove_confounders, anndata_manipulate, celltypist, anndata_inspect, scanpy_filter, scanpy_inspect, scanpy_plot |
UseGalaxy.eu |
|
0 |
|
3819557 |
9048588 |
7.983333 |
0 |
|
Single Cell |
Downstream Single-cell RNA analysis with RaceID |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-raceid/tutorial.html |
|
Molecular dynamics, Expression analysis, Expression profile clustering |
2019-03-25 |
2025-02-14 |
7 |
True |
False |
False |
True |
tp_sed_tool, datamash_ops, raceid_clustering, raceid_inspecttrajectory, raceid_inspectclusters, raceid_trajectory, datamash_transpose, tp_head_tool, raceid_filtnormconf |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
1176 |
1382 |
7.650000 |
0 |
|
Single Cell |
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-jupyter_basic-pipeline/tutorial.html |
|
|
2023-08-25 |
2025-03-11 |
13 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3750 |
4417 |
4.100000 |
0 |
|
Single Cell |
Filter, plot, and explore single cell RNA-seq data with Seurat |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExplore_SeuratTools/tutorial.html |
|
|
2024-04-09 |
2025-03-11 |
10 |
True |
False |
False |
True |
seurat_find_markers, seurat_filter_cells, seurat_scale_data, seurat_read10x, seurat_find_variable_genes, retrieve_scxa, seurat_find_clusters, seurat_find_neighbours, seurat_plot, seurat_run_umap, seurat_run_pca, seurat_normalise_data |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
|
0 |
|
2652 |
3154 |
5.750000 |
0 |
|
Single Cell |
Converting NCBI Data to the AnnData Format |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-ncbi-anndata/tutorial.html |
|
|
2023-12-13 |
2025-03-11 |
7 |
True |
False |
True |
True |
unzip, Paste1, scanpy_filter_cells, anndata_import, anndata_ops, anndata_manipulate, anndata_inspect, tp_replace_in_column, Cut1 |
UseGalaxy.org.au, UseGalaxy.be |
UseGalaxy.cz |
0 |
|
557 |
652 |
10.633333 |
0 |
|
Single Cell |
Evaluating Reference Data for Bulk RNA Deconvolution |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-deconvolution-evaluate/tutorial.html |
|
Visualisation, Annotation |
2025-02-02 |
2025-03-11 |
3 |
True |
False |
False |
True |
annotatemyids, Count1, Paste1, ggplot2_point, collapse_dataset, join1, music_construct_eset, datamash_transpose, tp_sed_tool, tp_cut_tool, music_deconvolution, tp_awk_tool, Remove beginning1, Cut1, bg_column_arrange_by_header, table_compute, tp_multijoin_tool, Add_a_column1, tp_easyjoin_tool, __DUPLICATE_FILE_TO_COLLECTION__, ggplot2_violin, collection_column_join |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.be, UseGalaxy.cz |
0 |
|
190 |
216 |
9.683333 |
0 |
|
Single Cell |
Clustering 3K PBMCs with Seurat |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-seurat-pbmc3k/tutorial.html |
|
|
2025-01-23 |
2025-05-09 |
5 |
True |
False |
True |
True |
seurat_preprocessing, seurat_clustering, Filter1, seurat_create, seurat_reduce_dimension, csv_to_tabular, seurat_plot, Cut1, seurat_data |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
MISSISSIPPI |
0 |
|
2374 |
2879 |
4.716667 |
0 |
|
Single Cell |
Multi-sample batch correction with Harmony and SnapATAC2 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-batch-correction-snapatac2/tutorial.html |
|
Essential dynamics, Dimensionality reduction, Gene expression profiling |
2025-02-28 |
2025-07-02 |
2 |
True |
False |
False |
True |
collection_element_identifiers, snapatac2_clustering, __EXTRACT_DATASET__, Show beginning1, fasta_compute_length, anndata_manipulate, snapatac2_peaks_and_motif, snapatac2_preprocessing, anndata_inspect, snapatac2_plotting, __FILTER_FROM_FILE__ |
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
736 |
803 |
2.366667 |
0 |
|
Single Cell |
Scanpy Parameter Iterator |
https://training.galaxyproject.org//topics/single-cell/tutorials/scanpy_parameter_iterator/tutorial.html |
|
|
2023-07-19 |
2025-02-13 |
8 |
True |
False |
False |
True |
scanpy_find_cluster, scanpy_plot_embed, scanpy_compute_graph, scanpy_run_umap, scanpy_run_tsne, scanpy_parameter_iterator |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.org (Main) |
|
0 |
|
359 |
396 |
6.300000 |
0 |
|
Single Cell |
Filter, plot and explore single-cell RNA-seq data with Scanpy |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html |
|
Principal component visualisation, Differential gene expression analysis, Expression profile clustering |
2021-03-24 |
2025-04-23 |
24 |
True |
False |
True |
True |
scanpy_cluster_reduce_dimension, scanpy_plot_embed, anndata_manipulate, scanpy_normalise_data, scanpy_run_tsne, join1, scanpy_inspect, scanpy_plot, scanpy_scale_data, scanpy_compute_graph, scanpy_find_variable_genes, anndata_inspect, scanpy_filter, interactive_tool_cellxgene_vip, scanpy_filter_cells, Cut1, scanpy_find_markers, scanpy_normalize, scanpy_find_cluster, scanpy_filter_genes, anndata_ops, retrieve_scxa, scanpy_run_pca, scanpy_run_umap |
|
|
0 |
|
5923 |
9215 |
7.750000 |
0 |
|
Single Cell |
Plates, Batches, and Barcodes |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plates-batches-barcodes/slides.html |
|
|
2019-02-16 |
2025-02-13 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9035996 |
2.100000 |
0 |
|
Single Cell |
Inferring single cell trajectories with Scanpy (Python) |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_JUPYTER-trajectories/tutorial.html |
|
|
2021-04-07 |
2025-03-11 |
20 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
5098 |
5954 |
3.516667 |
0 |
|
Single Cell |
Inferring single cell trajectories with Scanpy |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_trajectories/tutorial.html |
|
|
2023-12-08 |
2025-03-11 |
13 |
True |
False |
False |
True |
scanpy_find_cluster, scanpy_plot_embed, scanpy_compute_graph, anndata_manipulate, scanpy_run_fdg, scanpy_run_paga, scanpy_run_dpt, scanpy_plot_trajectory, scanpy_run_diffmap |
|
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.org (Main) |
0 |
|
1532 |
1905 |
7.266667 |
0 |
|
Single Cell |
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-2-preparescref/tutorial.html |
|
Annotation |
2023-01-20 |
2024-02-13 |
8 |
True |
False |
False |
True |
table_compute, tp_sed_tool, music_construct_eset, annotatemyids, sort1, tp_cut_tool, scanpy_read_10x, tp_awk_tool, add_line_to_file, retrieve_scxa, regex1, anndata_inspect, Cut1, datamash_transpose, tp_easyjoin_tool, music_manipulate_eset, join1 |
|
UseGalaxy.cz |
0 |
|
820 |
1328 |
7.933333 |
0 |
|
Single Cell |
Single-cell Formats and Resources |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-formats/slides.html |
|
|
2024-07-26 |
2025-02-13 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
1782273 |
3380767 |
1.583333 |
0 |
|
Single Cell |
Inferring single cell trajectories with Monocle3 (R) |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-rstudio/tutorial.html |
|
|
2023-04-12 |
2025-03-11 |
13 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
7317 |
8257 |
1.583333 |
0 |
|
Single Cell |
Inferring single cell trajectories with Monocle3 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-trajectories/tutorial.html |
|
|
2022-09-30 |
2025-04-23 |
24 |
True |
False |
True |
True |
monocle3_plotCells, monocle3_diffExp, tp_cut_tool, monocle3_topmarkers, monocle3_partition, monocle3_learnGraph, Filter1, anndata_inspect, monocle3_reduceDim, Cut1, datamash_transpose, monocle3_orderCells, regexColumn1, join1, monocle3_create, monocle3_preprocess |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
4280 |
5270 |
3.916667 |
0 |
|
Single Cell |
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-3-preparebulk/tutorial.html |
|
Annotation |
2023-01-20 |
2024-02-13 |
8 |
True |
False |
False |
True |
table_compute, tp_sed_tool, music_construct_eset, annotatemyids, sort1, tp_cut_tool, column_remove_by_header, tp_awk_tool, regex1, tp_easyjoin_tool, music_manipulate_eset |
|
UseGalaxy.cz |
0 |
|
850 |
1275 |
7.650000 |
0 |
|
Single Cell |
Trajectory analysis |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-trajectories/slides.html |
|
|
2022-09-30 |
2025-02-13 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2855292 |
5949682 |
1.883333 |
0 |
|
Single Cell |
Automated Cell Annotation |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-cell-annotation/slides.html |
|
|
2023-09-04 |
2025-02-27 |
7 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2248673 |
4501674 |
1.766667 |
0 |
|
Statistics and machine learning |
Machine learning: classification and regression |
https://training.galaxyproject.org//topics/statistics/tutorials/classification_regression/tutorial.html |
|
|
2019-03-07 |
2025-04-08 |
13 |
True |
False |
False |
True |
plotly_ml_performance_plots, sklearn_svm_classifier, plotly_regression_performance_plots, sklearn_ensemble |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
|
0 |
|
5854 |
10414 |
2.516667 |
0 |
|
Statistics and machine learning |
Clustering in Machine Learning |
https://training.galaxyproject.org//topics/statistics/tutorials/clustering_machinelearning/tutorial.html |
|
Visualisation |
2020-05-08 |
2025-04-08 |
14 |
True |
False |
False |
True |
csv_to_tabular, sklearn_numeric_clustering, ggplot2_point |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
8734 |
14332 |
2.466667 |
0 |
|
Statistics and machine learning |
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy |
https://training.galaxyproject.org//topics/statistics/tutorials/gpu_jupyter_lab/tutorial.html |
|
|
2022-04-06 |
2025-04-08 |
9 |
True |
False |
False |
True |
interactive_tool_ml_jupyter_notebook, Filter1, Cut1 |
UseGalaxy.eu |
|
0 |
|
1309 |
1635 |
8.450000 |
0 |
|
Statistics and machine learning |
Galaxy Tabular Learner - Building a Model using Chowell clinical data |
https://training.galaxyproject.org//topics/statistics/tutorials/loris_model/tutorial.html |
|
|
2024-12-13 |
2026-05-15 |
4 |
True |
True |
True |
True |
PyCaret_Model_Comparison, tabular_learner |
|
|
0 |
|
1568598 |
2840459 |
10.550000 |
0 |
|
Statistics and machine learning |
Age prediction using machine learning |
https://training.galaxyproject.org//topics/statistics/tutorials/age-prediction-with-ml/tutorial.html |
|
|
2019-01-25 |
2025-04-08 |
12 |
True |
False |
False |
True |
sklearn_ensemble, sklearn_build_pipeline, plotly_parallel_coordinates_plot, plotly_regression_performance_plots, sklearn_searchcv |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.no |
0 |
|
13451 |
21599 |
2.100000 |
0 |
|
Statistics and machine learning |
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000 |
https://training.galaxyproject.org//topics/statistics/tutorials/image_learner/tutorial.html |
|
|
2026-01-28 |
2026-05-18 |
4 |
True |
True |
True |
True |
image_learner |
UseGalaxy.eu, UseGalaxy.org (Main) |
|
0 |
|
534668 |
819399 |
6.300000 |
0 |
|
Statistics and machine learning |
Text-mining with the SimText toolset |
https://training.galaxyproject.org//topics/statistics/tutorials/text-mining_simtext/tutorial.html |
|
|
2021-04-05 |
2025-05-07 |
8 |
True |
False |
False |
True |
pubmed_by_queries, pmids_to_pubtator_matrix, interactive_tool_simtext_app |
UseGalaxy.eu |
|
0 |
|
561 |
758 |
10.816667 |
0 |
|
Statistics and machine learning |
Regression in Machine Learning |
https://training.galaxyproject.org//topics/statistics/tutorials/regression_machinelearning/tutorial.html |
|
|
2020-01-25 |
2026-05-12 |
20 |
True |
True |
True |
True |
sklearn_ensemble, sklearn_build_pipeline, Remove beginning1, plotly_regression_performance_plots, sklearn_generalized_linear, sklearn_searchcv |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
3814041 |
9040379 |
7.466667 |
0 |
|
Statistics and machine learning |
Unsupervised Analysis of Bone Marrow Cells with Flexynesis |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_unsupervised/tutorial.html |
|
|
2025-08-10 |
2025-08-13 |
2 |
True |
False |
False |
True |
flexynesis, flexynesis_utils, __EXTRACT_DATASET__, flexynesis_plot |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.org (Main) |
0 |
|
83 |
93 |
9.333333 |
0 |
|
Statistics and machine learning |
Basics of machine learning |
https://training.galaxyproject.org//topics/statistics/tutorials/machinelearning/tutorial.html |
|
|
2018-11-05 |
2026-05-12 |
16 |
True |
True |
True |
True |
sklearn_svm_classifier |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
3813661 |
9040183 |
12.816667 |
0 |
|
Statistics and machine learning |
Introduction to deep learning |
https://training.galaxyproject.org//topics/statistics/tutorials/intro_deep_learning/tutorial.html |
|
|
2020-03-26 |
2025-04-08 |
9 |
True |
False |
False |
True |
keras_model_config, ml_visualization_ex, keras_train_and_eval, keras_model_builder, model_prediction |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.fr |
0 |
|
2620 |
3318 |
7.100000 |
0 |
|
Statistics and machine learning |
Classification in Machine Learning |
https://training.galaxyproject.org//topics/statistics/tutorials/classification_machinelearning/tutorial.html |
|
|
2020-04-30 |
2025-05-14 |
18 |
True |
True |
True |
True |
sklearn_ensemble, sklearn_build_pipeline, Remove beginning1, sklearn_svm_classifier, sklearn_generalized_linear, sklearn_nn_classifier, sklearn_searchcv, plotly_ml_performance_plots |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.no |
0 |
|
3813602 |
9040365 |
10.683333 |
0 |
|
Statistics and machine learning |
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis |
https://training.galaxyproject.org//topics/statistics/tutorials/aberrant_pi3k_pathway_analysis/tutorial.html |
|
|
2021-05-06 |
2023-11-09 |
7 |
True |
False |
False |
True |
pancancer_targene_summary_figures, pancancer_targene_cell_line_predictions, pancancer_visualize_decisions, pancancer_compare_within_models, pancancer_targene_pharmacology, pancancer_external_sample_status_prediction, pancancer_within_disease_analysis, pancancer_alternative_genes_pathwaymapper, pancancer_classifier, pancancer_pathway_count_heatmaps, pancancer_apply_weights, pancancer_map_mutation_class |
|
|
0 |
|
877 |
1327 |
10.300000 |
0 |
|
Statistics and machine learning |
Identifing Survival Markers of Brain tumor with Flexynesis |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_survival/tutorial.html |
|
|
2025-08-13 |
2025-08-13 |
2 |
True |
False |
False |
True |
flexynesis_plot, datamash_ops, flexynesis, __EXTRACT_DATASET__, Add_a_column1, tp_replace_in_column |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.org (Main) |
0 |
|
139 |
167 |
7.733333 |
0 |
|
Statistics and machine learning |
Image classification in Galaxy with fruit 360 dataset |
https://training.galaxyproject.org//topics/statistics/tutorials/fruit_360/tutorial.html |
|
|
2021-12-01 |
2024-07-09 |
8 |
True |
True |
True |
True |
keras_model_config, ml_visualization_ex, tp_cut_tool, keras_train_and_eval, keras_model_builder, sklearn_to_categorical, model_prediction |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.fr |
0 |
|
3329467 |
7407352 |
5.233333 |
0 |
|
Statistics and machine learning |
Interval-Wise Testing for omics data |
https://training.galaxyproject.org//topics/statistics/tutorials/iwtomics/tutorial.html |
|
Peak calling, Differentially-methylated region identification, Comparison, Differential gene expression analysis, Genome annotation |
2018-06-14 |
2023-11-09 |
17 |
True |
False |
False |
True |
iwtomics_testandplot, iwtomics_loadandplot, iwtomics_plotwithscale |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
|
0 |
|
400 |
523 |
15.116667 |
0 |
|
Statistics and machine learning |
Modeling Breast Cancer Subtypes with Flexynesis |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_classification/tutorial.html |
|
|
2025-08-13 |
2026-05-18 |
7 |
True |
False |
True |
True |
table_compute, flexynesis_plot, tp_cut_tool, flexynesis, __EXTRACT_DATASET__, tp_sort_header_tool, Show beginning1, tabpfn, datamash_transpose, tp_easyjoin_tool, join1 |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.fr |
0 |
|
218 |
299 |
12.733333 |
0 |
|
Statistics and machine learning |
Deep Learning (Part 2) - Recurrent neural networks (RNN) |
https://training.galaxyproject.org//topics/statistics/tutorials/RNN/tutorial.html |
|
|
2021-02-23 |
2025-05-10 |
15 |
True |
True |
True |
True |
keras_model_config, ml_visualization_ex, keras_train_and_eval, keras_model_builder, model_prediction |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.fr, UseGalaxy.no |
0 |
|
3743851 |
8785913 |
5.100000 |
0 |
|
Statistics and machine learning |
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK |
https://training.galaxyproject.org//topics/statistics/tutorials/multimodal_learner/tutorial.html |
|
|
2026-03-25 |
2026-05-18 |
4 |
True |
True |
True |
True |
multimodal_learner |
UseGalaxy.org (Main) |
UseGalaxy.eu |
0 |
|
236959 |
397469 |
14.283333 |
0 |
|
Statistics and machine learning |
Deep Learning (Part 3) - Convolutional neural networks (CNN) |
https://training.galaxyproject.org//topics/statistics/tutorials/CNN/tutorial.html |
|
|
2021-04-19 |
2026-05-11 |
20 |
True |
True |
True |
True |
keras_model_config, ml_visualization_ex, keras_train_and_eval, keras_model_builder, sklearn_to_categorical, model_prediction |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.fr |
0 |
|
3669142 |
8504899 |
3.950000 |
0 |
|
Statistics and machine learning |
Deep Learning (Part 1) - Feedforward neural networks (FNN) |
https://training.galaxyproject.org//topics/statistics/tutorials/FNN/tutorial.html |
|
|
2021-04-28 |
2026-05-11 |
13 |
True |
True |
True |
True |
keras_model_config, keras_train_and_eval, plotly_regression_performance_plots, keras_model_builder, model_prediction |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.fr, UseGalaxy.no |
0 |
|
3673838 |
8494080 |
3.350000 |
0 |
|
Statistics and machine learning |
Train and Test a Deep learning image classifier with Galaxy-Ludwig |
https://training.galaxyproject.org//topics/statistics/tutorials/galaxy-ludwig/tutorial.html |
|
|
2024-10-28 |
2024-12-11 |
2 |
True |
False |
False |
True |
ludwig_experiment |
|
|
0 |
|
285 |
350 |
7.116667 |
0 |
|
Statistics and machine learning |
Prepare Data from CbioPortal for Flexynesis Integration |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_cbio_import/tutorial.html |
|
|
2025-08-10 |
2025-08-13 |
2 |
True |
False |
False |
True |
table_compute, flexynesis_utils, tp_cut_tool, tp_sort_header_tool, __EXTRACT_DATASET__, flexynesis_cbioportal_import |
UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.org (Main) |
0 |
|
106 |
113 |
6.300000 |
0 |
|
Statistics and machine learning |
Fine tune large protein model (ProtTrans) using HuggingFace |
https://training.galaxyproject.org//topics/statistics/tutorials/fine_tuning_protTrans/tutorial.html |
|
|
2024-06-17 |
2025-04-08 |
4 |
True |
True |
True |
False |
interactive_tool_ml_jupyter_notebook |
UseGalaxy.eu |
|
0 |
|
1841137 |
3523078 |
6.550000 |
0 |
|
Statistics and machine learning |
Introduction to Machine Learning using R |
https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-r/tutorial.html |
|
|
2021-05-21 |
2024-10-15 |
15 |
True |
False |
True |
False |
interactive_tool_rstudio |
UseGalaxy.eu |
|
0 |
|
4662 |
7148 |
4.883333 |
0 |
|
Statistics and machine learning |
Supervised Learning with Hyperdimensional Computing |
https://training.galaxyproject.org//topics/statistics/tutorials/hyperdimensional_computing/tutorial.html |
|
|
2023-04-28 |
2023-11-09 |
2 |
True |
False |
False |
False |
chopin2 |
UseGalaxy.org (Main) |
UseGalaxy.eu |
0 |
|
517 |
624 |
5.933333 |
0 |
|
Synthetic Biology |
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/retrosynthesis_analysis/tutorial.html |
|
|
2022-06-23 |
2024-06-14 |
8 |
True |
False |
True |
True |
rpcompletion, rrparser, retropath2, get_sbml_model, rpextractsink, rp2paths |
UseGalaxy.be |
|
0 |
|
671 |
945 |
9.433333 |
0 |
|
Synthetic Biology |
Evaluating and ranking a set of pathways based on multiple metrics |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/pathway_analysis/tutorial.html |
|
|
2022-09-26 |
2024-06-14 |
7 |
True |
False |
True |
True |
rpscore, rpthermo, rpranker, rpfba |
UseGalaxy.be |
|
0 |
|
708 |
1023 |
9.633333 |
0 |
|
Synthetic Biology |
Designing plasmids encoding predicted pathways by using the BASIC assembly method |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/basic_assembly_analysis/tutorial.html |
|
|
2022-05-12 |
2024-06-14 |
8 |
True |
False |
True |
True |
dnabot, rpbasicdesign, selenzy-wrapper |
UseGalaxy.be |
UseGalaxy.fr |
0 |
|
1138 |
1720 |
10.183333 |
0 |
|
Teaching and Hosting Galaxy training |
Workshop Kickoff |
https://training.galaxyproject.org//topics/teaching/tutorials/workshop-intro/slides.html |
|
|
2019-06-04 |
2024-02-20 |
5 |
False |
True |
False |
False |
|
|
|
0 |
|
3810577 |
9036005 |
2.100000 |
0 |
|
Teaching and Hosting Galaxy training |
Overview of the Galaxy Training Material for Instructors |
https://training.galaxyproject.org//topics/teaching/tutorials/gtn-for-instructors/slides.html |
|
|
2022-09-23 |
2024-08-08 |
3 |
False |
True |
True |
False |
|
|
|
0 |
|
2865911 |
5976721 |
1.883333 |
0 |
|
Teaching and Hosting Galaxy training |
Hybrid training |
https://training.galaxyproject.org//topics/teaching/tutorials/hybrid-training/tutorial.html |
|
|
2022-09-23 |
2024-06-25 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
39 |
41 |
2.650000 |
0 |
|
Teaching and Hosting Galaxy training |
Teaching experiences |
https://training.galaxyproject.org//topics/teaching/tutorials/experiences/tutorial.html |
|
|
2022-09-23 |
2022-09-23 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
352 |
588 |
16.116667 |
0 |
|
Teaching and Hosting Galaxy training |
Running a workshop as an instructor |
https://training.galaxyproject.org//topics/teaching/tutorials/running-workshop/tutorial.html |
|
|
2018-11-15 |
2025-12-18 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
238 |
369 |
16.766667 |
0 |
|
Teaching and Hosting Galaxy training |
Asynchronous training |
https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-async/tutorial.html |
|
|
2023-11-02 |
2023-11-02 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
22 |
22 |
13.766667 |
0 |
|
Teaching and Hosting Galaxy training |
Training Infrastructure as a Service |
https://training.galaxyproject.org//topics/teaching/tutorials/setup-tiaas-for-training/tutorial.html |
|
|
2018-11-15 |
2023-12-20 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
300 |
497 |
17.633333 |
0 |
|
Teaching and Hosting Galaxy training |
Set up a Galaxy for Training |
https://training.galaxyproject.org//topics/teaching/tutorials/setup-galaxy-for-training/tutorial.html |
|
|
2018-06-04 |
2023-11-09 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
405 |
456 |
10.150000 |
0 |
|
Teaching and Hosting Galaxy training |
Organizing a workshop |
https://training.galaxyproject.org//topics/teaching/tutorials/organize-workshop/tutorial.html |
|
|
2018-11-15 |
2023-11-09 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
346 |
375 |
14.200000 |
0 |
|
Teaching and Hosting Galaxy training |
Course Builder |
https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-coursebuilder/tutorial.html |
|
|
2023-11-02 |
2023-11-02 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
192 |
219 |
15.933333 |
0 |
|
Teaching and Hosting Galaxy training |
Live Coding is a Skill |
https://training.galaxyproject.org//topics/teaching/tutorials/live-coding/tutorial.html |
|
|
2022-09-23 |
2023-11-09 |
6 |
True |
False |
False |
False |
|
|
|
0 |
|
116 |
120 |
4.183333 |
0 |
|
Teaching and Hosting Galaxy training |
Teaching online |
https://training.galaxyproject.org//topics/teaching/tutorials/teaching-online/tutorial.html |
|
|
2022-09-23 |
2023-10-23 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
37 |
37 |
1.816667 |
0 |
|
Teaching and Hosting Galaxy training |
Galaxy Admin Training |
https://training.galaxyproject.org//topics/teaching/tutorials/galaxy-admin-training/tutorial.html |
|
|
2020-11-04 |
2024-09-17 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
192 |
213 |
16.900000 |
0 |
|
Transcriptomics |
Genome-wide alternative splicing analysis |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.html |
|
Sequence annotation, Statistical calculation, Sequence analysis, Visualisation, Protein sequence analysis, Sequence composition calculation, Transcriptome assembly, Sequence comparison, Sequence alignment, Formatting, De-novo assembly, Sequence assembly validation, Data handling, Validation, RNA-Seq analysis, Sequence contamination filtering, Sequencing quality control |
2023-05-17 |
2026-04-13 |
13 |
True |
True |
False |
True |
sort1, multiqc, rseqc_inner_distance, pygenomeTracks, fastp, cat1, gffcompare, rseqc_geneBody_coverage, gtftobed12, Filter1, addValue, pfamscan, tp_cat, __FLATTEN__, cpat, gene2exon1, gffread, tp_awk_tool, rna_star, Remove beginning1, fastqc, tp_uniq_tool, tp_grep_tool, isoformswitchanalyzer, regex1, Cut1, stringtie, collection_element_identifiers, rna_quast, rseqc_junction_saturation, Add_a_column1, rseqc_infer_experiment, rseqc_read_distribution, __FILTER_FROM_FILE__, stringtie_merge, rseqc_junction_annotation |
|
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
2455120 |
4943636 |
6.933333 |
0 |
|
Transcriptomics |
Network analysis with Heinz |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/network-analysis-with-heinz/tutorial.html |
|
Differential gene expression analysis, RNA-Seq analysis, Pathway or network analysis |
2018-10-11 |
2024-01-15 |
16 |
True |
True |
False |
True |
deseq2, heinz_scoring, heinz_visualization, heinz, Cut1, heinz_bum |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
3812723 |
9039295 |
11.683333 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with Volcano Plot |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html |
|
|
2018-12-31 |
2025-04-17 |
16 |
True |
False |
True |
True |
volcanoplot |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
Galaxy@AuBi, GalaxyTrakr, MISSISSIPPI, UseGalaxy.no |
0 |
|
160358 |
259564 |
2.083333 |
0 |
|
Transcriptomics |
Differential abundance testing of small RNAs |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/srna/tutorial.html |
|
Statistical calculation, Gene expression analysis, Primer removal, RNA-Seq quantification, Sequence composition calculation, RNA-Seq analysis, Read pre-processing, Differential gene expression analysis, Sequence alignment, Sequence trimming, Sequencing quality control |
2017-06-29 |
2023-11-09 |
26 |
True |
False |
False |
True |
deseq2, fastq_manipulation, hisat2, fastqc, Filter1, bedtools_bamtofastq, salmon, samtool_filter2, trim_galore |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
7318 |
12616 |
5.000000 |
0 |
|
Transcriptomics |
2: RNA-seq counts to genes |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.html |
|
Annotation, RNA-Seq analysis |
2018-12-31 |
2024-04-10 |
21 |
True |
False |
False |
True |
annotatemyids, tp_cut_tool, mergeCols1, limma_voom, tp_replace_in_line |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.fr |
0 |
|
50376 |
81650 |
5.700000 |
0 |
|
Transcriptomics |
3: RNA-seq genes to pathways |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-genes-to-pathways/tutorial.html |
|
Gene set testing, Gene functional annotation, Gene-set enrichment analysis |
2018-12-31 |
2023-11-09 |
13 |
True |
False |
False |
True |
tp_cut_tool, fgsea, tp_sort_header_tool, Add_a_column1, egsea, Cut1, goseq, join1 |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
28886 |
45157 |
5.716667 |
0 |
|
Transcriptomics |
GO Enrichment Analysis |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/goenrichment/tutorial.html |
|
Gene-set enrichment analysis |
2019-01-23 |
2024-03-05 |
12 |
True |
False |
False |
True |
goslimmer, goenrichment, Filter1 |
Galaxy@AuBi, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
|
0 |
|
24020 |
38546 |
3.333333 |
0 |
|
Transcriptomics |
RNA-Seq data analysis, clustering and visualisation tutorial |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-clustering-viz/tutorial.html |
|
Differential gene expression analysis, Gene functional annotation, RNA-Seq analysis |
2025-05-28 |
2026-04-13 |
6 |
True |
False |
False |
True |
table_compute, volcanoplot, deseq2, Grouping1, ggplot2_heatmap2, length_and_gc_content, tp_sort_header_tool, Add_a_column1, Show beginning1, Filter1, cat1, deg_annotate, Multivariate, Cut1, tp_easyjoin_tool, goseq |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr |
UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
2791 |
3302 |
3.183333 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with heatmap2 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-heatmap2/tutorial.html |
|
|
2018-12-31 |
2026-04-13 |
15 |
True |
False |
False |
True |
Show tail1, ggplot2_heatmap2, tp_sort_header_tool, Show beginning1, Filter1, cat1, Cut1, datamash_transpose, join1 |
GalaxyTrakr, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.no |
0 |
|
79884 |
130384 |
2.633333 |
0 |
|
Transcriptomics |
De novo transcriptome assembly, annotation, and differential expression analysis |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/full-de-novo/tutorial.html |
|
De-novo assembly, Statistical calculation, Coding region prediction, Gene functional annotation, Validation, Sequence composition calculation, Transcriptome assembly, de Novo sequencing, Sequencing quality control |
2020-02-13 |
2023-11-09 |
8 |
True |
False |
False |
True |
describe_samples, trinity_abundance_estimates_to_matrix, trinity_define_clusters_by_cutting_tree, multiqc, trinity_contig_exn50_statistic, fastqc, trinity_align_and_estimate_abundance, trinity, trinity_analyze_diff_expr, trimmomatic, trinity_filter_low_expr_transcripts, trinity_samples_qccheck, transdecoder, trinity_run_de_analysis, trinotate |
UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.no |
0 |
|
15541 |
27583 |
4.116667 |
0 |
|
Transcriptomics |
1: RNA-Seq reads to counts |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.html |
|
Statistical calculation, Primer removal, Read summarisation, RNA-Seq quantification, Data handling, Validation, Sequence composition calculation, Read pre-processing, Sequence alignment, Formatting, Sequence trimming, Sequencing quality control |
2018-09-23 |
2024-08-09 |
33 |
True |
False |
False |
True |
hisat2, multiqc, picard_MarkDuplicates, fastqc, rseqc_infer_experiment, rseqc_read_distribution, collection_column_join, rseqc_geneBody_coverage, cutadapt, featurecounts, samtools_idxstats |
UseGalaxy.eu |
MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
83220 |
149070 |
5.300000 |
0 |
|
Transcriptomics |
RNA-RNA interactome data analysis |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-interactome/tutorial.html |
|
Sequence composition calculation, Statistical calculation, Primer removal, Read pre-processing, Sequence trimming, Sequencing quality control |
2020-03-23 |
2023-11-09 |
12 |
True |
False |
False |
True |
chira_extract, chira_merge, fastqc, query_tabular, chira_quantify, chira_map, cutadapt, chira_collapse |
UseGalaxy.be, UseGalaxy.no, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu |
0 |
|
1577 |
2337 |
11.133333 |
0 |
|
Transcriptomics |
Small Non-coding RNA Clustering using BlockClust |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/small_ncrna_clustering/tutorial.html |
|
|
2018-12-14 |
2023-11-09 |
8 |
True |
False |
False |
True |
blockclust, blockbuster, samtools_sort, tp_sort_header_tool |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no |
0 |
|
1116 |
1501 |
13.250000 |
0 |
|
Transcriptomics |
CLIP-Seq data analysis from pre-processing to motif detection |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/clipseq/tutorial.html |
|
Mapping, Sequence composition calculation, Read pre-processing, Primer removal, Sequence alignment, Statistical calculation, Sequence trimming, Sequencing quality control |
2018-08-17 |
2023-11-09 |
23 |
True |
False |
False |
True |
sort1, umi_tools_extract, __MERGE_COLLECTION__, deeptools_plot_fingerprint, peakachu, umi_tools_dedup, cutadapt, deeptools_plot_correlation, wig_to_bigWig, __SORTLIST__, tp_awk_tool, rna_star, fastqc, meme_chip, bctools_extract_alignment_ends, bedtools_slopbed, bedtools_genomecoveragebed_bedgraph, Extract genomic DNA 1, deeptools_multi_bam_summary, rcas |
|
|
0 |
|
8832 |
16940 |
3.400000 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with CummeRbund |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-cummerbund/tutorial.html |
|
|
2017-10-16 |
2023-11-09 |
16 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3813249 |
9039987 |
11.216667 |
0 |
|
Transcriptomics |
RNA-Seq analysis with AskOmics Interactive Tool |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-with-askomics-it/tutorial.html |
|
|
2020-07-09 |
2023-11-09 |
13 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3811683 |
9037402 |
18.566667 |
0 |
|
Transcriptomics |
Introduction to Transcriptomics |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/introduction/slides.html |
|
|
2016-10-05 |
2025-04-08 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9036013 |
2.100000 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with Volcano Plot in R |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot-r/tutorial.html |
|
|
2021-06-14 |
2024-06-14 |
8 |
True |
False |
True |
False |
volcanoplot, interactive_tool_rstudio |
UseGalaxy.eu |
|
0 |
|
31486 |
42864 |
3.716667 |
0 |
|
Transcriptomics |
Reference-based RNAseq data analysis (long) |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rb-rnaseq/tutorial.html |
|
|
2017-02-22 |
2023-02-17 |
12 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
22838 |
35443 |
4.116667 |
0 |
|
Transcriptomics |
RNA Seq Counts to Viz in R |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-viz-in-r/tutorial.html |
|
|
2019-10-08 |
2024-10-15 |
21 |
True |
False |
True |
False |
interactive_tool_rstudio |
UseGalaxy.eu |
|
0 |
|
4442 |
5675 |
10.883333 |
0 |
|
Transcriptomics |
RNA-seq Alignment with STAR |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-bash-star-align/tutorial.html |
|
|
2023-05-15 |
2023-11-09 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
12011 |
14652 |
3.266667 |
0 |
|
Transcriptomics |
Reference-based RNA-Seq data analysis |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/ref-based/tutorial.html |
|
Primer removal, Gene functional annotation, Visualisation, Genome visualisation, Enrichment analysis, Sequence alignment, Formatting, Structure visualisation, Pathway visualisation, Read mapping, Read summarisation, Pathway or network analysis, RNA-Seq quantification, Exonic splicing enhancer prediction, Data handling, Validation, RNA-Seq analysis, Read pre-processing, Differential gene expression analysis, Sequence trimming, Sequencing quality control, Pathway or network visualisation |
2016-10-05 |
2026-04-13 |
110 |
True |
False |
True |
True |
multiqc, __MERGE_COLLECTION__, ggplot2_heatmap2, length_and_gc_content, pygenomeTracks, cat1, pathview, dexseq_count, rseqc_geneBody_coverage, tp_replace_in_line, join1, gtftobed12, samtools_idxstats, tp_sort_header_tool, Filter1, deg_annotate, samtools_view, tp_cat, __FLATTEN__, __TAG_FROM_FILE__, cutadapt, dexseq, deseq2, Grouping1, rna_star, Remove beginning1, __EXTRACT_DATASET__, tp_grep_tool, Cut1, ChangeCase, featurecounts, table_compute, collection_element_identifiers, picard_MarkDuplicates, Add_a_column1, rseqc_infer_experiment, jbrowse2, rseqc_read_distribution, falco, __FILTER_FROM_FILE__, goseq |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.org.au |
0 |
|
207693 |
378277 |
4.400000 |
0 |
|
Transcriptomics |
Pathway analysis with the MINERVA Platform |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/minerva-pathways/tutorial.html |
|
Statistical calculation, Primer removal, Read summarisation, Gene functional annotation, RNA-Seq quantification, Annotation, Data handling, Validation, Sequence composition calculation, RNA-Seq analysis, Read pre-processing, Sequence alignment, Sequence trimming, Sequencing quality control |
2024-03-28 |
2024-07-26 |
3 |
True |
False |
False |
True |
annotatemyids, multiqc, limma_voom, rseqc_geneBody_coverage, tp_replace_in_line, join1, tp_sort_header_tool, cutadapt, hisat2, __EXTRACT_DATASET__, fastqc, fasterq_dump, Cut1, featurecounts, Grep1, tp_sorted_uniq, Add_a_column1, rseqc_read_distribution, goseq, collection_column_join |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.cz, UseGalaxy.fr, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
759 |
886 |
14.066667 |
0 |
|
Transcriptomics |
De novo transcriptome reconstruction with RNA-Seq |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/de-novo/tutorial.html |
|
Statistical calculation, Read summarisation, RNA-Seq quantification, Sequence alignment, Sequence composition calculation, RNA-Seq analysis, Transcriptome assembly, Differential gene expression analysis, Sequence annotation, Sequencing quality control |
2017-02-19 |
2024-06-14 |
36 |
True |
False |
True |
True |
deseq2, stringtie, hisat2, fastqc, Filter1, gffcompare, trimmomatic, deeptools_bam_coverage, stringtie_merge, featurecounts |
Galaxy@AuBi, UseGalaxy.be, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.no |
0 |
|
17657 |
29945 |
6.700000 |
0 |
|
Variant Analysis |
Introduction to Variant analysis |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/introduction/slides.html |
|
|
2016-08-19 |
2023-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9036013 |
2.100000 |
0 |
|
Variant Analysis |
Calling very rare variants |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/dunovo/tutorial.html |
|
Genome indexing, Sequence composition calculation, Statistical calculation, Sequence alignment, Generation, Variant calling, Sequencing quality control, Read mapping |
2017-02-22 |
2024-12-09 |
21 |
True |
False |
False |
True |
sequence_content_trimmer, make_families, bamleftalign, dunovo, fastqc, Filter1, align_families, correct_barcodes, bwa_mem, allele_counts_1, naive_variant_caller |
UseGalaxy.be, UseGalaxy.org (Main) |
|
0 |
|
2459 |
3609 |
5.166667 |
0 |
|
Variant Analysis |
Identification of somatic and germline variants from tumor and normal sample pairs |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variants/tutorial.html |
|
Sequence alignment analysis, Statistical calculation, Read mapping, Visualisation, Generation, Data handling, Validation, Genome indexing, Sequence composition calculation, Sequence alignment, Variant calling, Sequencing quality control |
2019-03-13 |
2025-03-20 |
16 |
True |
False |
False |
True |
bamFilter, bamleftalign, gemini_load, gemini_query, gemini_annotate, fastqc, multiqc, trimmomatic, falco, snpEff, bg_column_arrange_by_header, tp_easyjoin_tool, varscan_somatic, samtools_calmd, bwa_mem, samtools_rmdup |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.cz, UseGalaxy.fr |
0 |
|
15757 |
27804 |
5.616667 |
0 |
|
Variant Analysis |
Calling variants in diploid systems |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/dip/tutorial.html |
|
Genetic variation analysis, Statistical calculation, Variant calling, Sequence analysis |
2017-02-20 |
2025-04-28 |
17 |
True |
False |
False |
True |
gemini_db_info, freebayes, gemini_load, gemini_query, vcfallelicprimitives, snpEff |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.no |
0 |
|
16945 |
28674 |
8.700000 |
0 |
|
Variant Analysis |
Somatic Variant Discovery from WES Data Using Control-FREEC |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variant-discovery/tutorial.html |
|
Statistical calculation, Read mapping, Visualisation, Generation, Sequence visualisation, Validation, Genome indexing, Genome alignment, Sequence composition calculation, Sequence alignment, Variant calling, Sequencing quality control, Copy number estimation |
2022-10-05 |
2025-03-20 |
14 |
True |
False |
False |
True |
Grep1, control_freec, circos, __BUILD_LIST__, bamleftalign, multiqc, __EXTRACT_DATASET__, fastqc, trimmomatic, samtools_view, __RELABEL_FROM_FILE__, falco, samtools_calmd, tp_replace_in_line, bwa_mem, tp_text_file_with_recurring_lines, samtools_rmdup |
|
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr |
0 |
|
2058 |
2616 |
7.700000 |
0 |
|
Variant Analysis |
Mapping and molecular identification of phenotype-causing mutations |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html |
|
|
2018-03-07 |
2023-11-09 |
16 |
True |
False |
False |
True |
tp_find_and_replace, mimodd_varreport, mimodd_map, snpEff_download, snpEff, mimodd_varcall, mimodd_vcf_filter, mimodd_varextract |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
4722 |
6808 |
10.266667 |
0 |
|
Variant Analysis |
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/baculovirus-isolate-variation/tutorial.html |
|
Read mapping, Primer removal, Visualisation, Generation, Data handling, Read pre-processing, Sequence alignment, Sequence trimming, Genome indexing |
2025-02-24 |
2025-02-24 |
1 |
True |
False |
False |
True |
ncbi_acc_download, bcftools_call, ggplot2_point, tp_awk_tool, fastq_dump, Filter1, vcf2tsv, collapse_dataset, tp_replace_in_column, tp_replace_in_line, bwa_mem, bcftools_mpileup, trim_galore |
UseGalaxy.org.au, UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.cz |
0 |
|
481 |
586 |
5.350000 |
0 |
|
Variant Analysis |
Exome sequencing data analysis for diagnosing a genetic disease |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/exome-seq/tutorial.html |
|
Statistical calculation, Sequence analysis, Read mapping, Visualisation, Generation, Genetic variation analysis, Validation, Genome indexing, Sequence composition calculation, Sequence alignment, Variant calling, Sequencing quality control |
2016-08-19 |
2026-03-09 |
30 |
True |
False |
True |
True |
bcftools_norm, gemini_inheritance, freebayes, multiqc, gemini_load, fastqc, trimmomatic, snpEff_download, samtools_view, snpEff, falco, bwa_mem, samtools_rmdup |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
39765 |
70546 |
5.250000 |
0 |
|
Variant Analysis |
Trio Analysis using Synthetic Datasets from RD-Connect GPAP |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/trio-analysis/tutorial.html |
|
Genetic variation analysis, Sequence analysis |
2022-05-19 |
2024-09-17 |
13 |
True |
False |
True |
True |
bcftools_norm, gemini_inheritance, bcftools_merge, CONVERTER_gz_to_uncompressed, gemini_load, pyega3, Filter1, gene_iobio_display_generation_iframe, tp_grep_tool, snpEff, CONVERTER_uncompressed_to_gz, regexColumn1 |
UseGalaxy.be, UseGalaxy.eu |
UseGalaxy.org.au, UseGalaxy.cz |
0 |
|
2194 |
3753 |
9.616667 |
0 |
|
Variant Analysis |
Calling variants in non-diploid systems |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/non-dip/tutorial.html |
Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation |
Sequence alignment analysis, Statistical calculation, Read mapping, Generation, Data handling, Genome indexing, Sequence composition calculation, Sequence alignment, Formatting, Variant calling, Sequencing quality control |
2017-02-16 |
2024-03-15 |
23 |
True |
False |
False |
True |
bamFilter, freebayes, bamleftalign, vcffilter2, picard_MarkDuplicates, fastqc, picard_MergeSamFiles, vcf2tsv, Cut1, bwa_mem |
UseGalaxy.be, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
UseGalaxy.org.au, UseGalaxy.cz, UseGalaxy.no |
0 |
|
9869 |
16898 |
5.550000 |
0 |
|
Variant Analysis |
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs) |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/beacon_cnv_query/tutorial.html |
|
Service discovery, Database search, Genetic variation analysis |
2024-08-06 |
2024-09-27 |
3 |
True |
False |
False |
False |
beacon2_cnv |
|
UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.fr |
0 |
|
256 |
295 |
9.500000 |
0 |
|
Variant Analysis |
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/beaconise_1000hg/tutorial.html |
|
Service discovery, Database search, Genetic variation analysis |
2024-08-06 |
2026-01-12 |
4 |
True |
False |
False |
False |
beacon2_import, cnv_vcf2json, cnv_phenopacket, beacon2_cnv |
|
UseGalaxy.eu |
0 |
|
427 |
470 |
4.283333 |
0 |
|
Visualisation |
Ploting a Microbial Genome with Circos |
https://training.galaxyproject.org//topics/visualisation/tutorials/circos-microbial/tutorial.html |
|
Sequence visualisation |
2023-11-08 |
2024-09-17 |
3 |
True |
False |
False |
True |
circos_interval_to_tile, gff2bed1, circos_gc_skew, circos_wiggle_to_scatter, Cut1, deeptools_bam_coverage, circos_interval_to_text, circos |
UseGalaxy.be, UseGalaxy.cz, UseGalaxy.fr |
Galaxy@AuBi, MISSISSIPPI, UseGalaxy.org.au, UseGalaxy.eu, UseGalaxy.no, UseGalaxy.org (Main) |
0 |
|
1816 |
2258 |
7.833333 |
0 |
|
Visualisation |
Visualisation with Circos |
https://training.galaxyproject.org//topics/visualisation/tutorials/circos/tutorial.html |
|
Sequence visualisation |
2020-01-10 |
2024-10-15 |
22 |
True |
True |
True |
True |
upload1, Grep1, Remove beginning1, Cut1, random_lines1, circos |
Galaxy@AuBi, Galaxy@Pasteur, MISSISSIPPI, UseGalaxy.be, UseGalaxy.cz, UseGalaxy.eu, UseGalaxy.fr, UseGalaxy.org (Main) |
GalaxyTrakr, UseGalaxy.no |
0 |
|
3842165 |
9085909 |
4.733333 |
0 |
|
Visualisation |
Visualisations in Galaxy |
https://training.galaxyproject.org//topics/visualisation/tutorials/introduction/slides.html |
|
|
2020-01-10 |
2023-01-12 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
3810577 |
9036015 |
2.100000 |
0 |
|
Visualisation |
Friends Don't Let Friends Make Bad Graphs |
https://training.galaxyproject.org//topics/visualisation/tutorials/bad-graphs/slides.html |
|
|
2023-11-20 |
2023-11-20 |
2 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr |
0 |
|
2163091 |
4317713 |
1.750000 |
0 |