|
Galaxy Server Administration |
Galaxy on the Cloud |
S00004 |
gxy.io/GTN:S00004 |
https://training.galaxyproject.org//topics/admin/tutorials/cloudbursting/slides.html |
|
|
2019-01-31 |
2024-12-19 |
7 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Galaxy from an administrator's point of view |
S00015 |
gxy.io/GTN:S00015 |
https://training.galaxyproject.org//topics/admin/tutorials/introduction/slides.html |
|
|
2017-06-12 |
2024-06-25 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Galaxy Installation on Kubernetes |
T00013 |
gxy.io/GTN:T00013 |
https://training.galaxyproject.org//topics/admin/tutorials/k8s-deploying-galaxy/tutorial.html |
|
|
2019-07-02 |
2024-06-30 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
1772 |
2838 |
5.416667 |
0 |
|
Galaxy Server Administration |
Managing Galaxy on Kubernetes |
T00014 |
gxy.io/GTN:T00014 |
https://training.galaxyproject.org//topics/admin/tutorials/k8s-managing-galaxy/tutorial.html |
|
|
2019-07-02 |
2024-12-19 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
809 |
1125 |
10.366667 |
0 |
|
Galaxy Server Administration |
Galaxy usage on SURF Research Cloud |
T00479 |
gxy.io/GTN:T00479 |
https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-galaxy/tutorial.html |
Informatics, Data management |
|
2024-12-18 |
2025-08-05 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
194 |
219 |
8.883333 |
0 |
|
Galaxy Server Administration |
Pulsar usage on SURF Research Cloud |
T00480 |
gxy.io/GTN:T00480 |
https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-pulsar/tutorial.html |
Informatics, Data management |
|
2024-12-18 |
2024-12-19 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
178 |
189 |
4.200000 |
0 |
|
Galaxy Server Administration |
Deploying Tailscale/Headscale for private mesh networking |
T00027 |
gxy.io/GTN:T00027 |
https://training.galaxyproject.org//topics/admin/tutorials/wireguard-headscale/tutorial.html |
Data security, Software engineering |
|
2022-09-21 |
2024-12-19 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
2610 |
3306 |
1.216667 |
0 |
|
Galaxy Server Administration |
Deploying Wireguard for private mesh networking |
T00026 |
gxy.io/GTN:T00026 |
https://training.galaxyproject.org//topics/admin/tutorials/wireguard/tutorial.html |
|
|
2022-09-21 |
2024-12-19 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
1277 |
1434 |
3.316667 |
0 |
|
Galaxy Server Administration |
Deploying a compute cluster in OpenStack via Terraform |
T00021 |
gxy.io/GTN:T00021 |
https://training.galaxyproject.org//topics/admin/tutorials/terraform/tutorial.html |
|
|
2018-10-27 |
2024-12-19 |
15 |
True |
True |
False |
False |
|
|
|
0 |
|
4362286 |
9957854 |
3.350000 |
0 |
|
Galaxy Server Administration |
Reference Data with CVMFS |
T00003 |
gxy.io/GTN:T00003 |
https://training.galaxyproject.org//topics/admin/tutorials/cvmfs/tutorial.html |
|
|
2019-01-27 |
2026-07-12 |
56 |
True |
True |
True |
False |
|
|
|
0 |
|
4348528 |
9931045 |
11.116667 |
0 |
|
Galaxy Server Administration |
User, Role, Group, Quota, and Authentication managment |
S00027 |
gxy.io/GTN:S00027 |
https://training.galaxyproject.org//topics/admin/tutorials/users-groups-quotas/slides.html |
|
|
2018-01-07 |
2024-08-08 |
19 |
False |
True |
True |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
External Authentication |
T00007 |
gxy.io/GTN:T00007 |
https://training.galaxyproject.org//topics/admin/tutorials/external-auth/tutorial.html |
|
|
2019-01-28 |
2022-10-18 |
14 |
True |
True |
False |
False |
|
|
|
0 |
|
4346827 |
9928655 |
9.216667 |
0 |
|
Galaxy Server Administration |
Distributed Object Storage |
T00016 |
gxy.io/GTN:T00016 |
https://training.galaxyproject.org//topics/admin/tutorials/object-store/tutorial.html |
|
|
2019-01-28 |
2025-03-24 |
28 |
True |
True |
True |
False |
|
|
|
0 |
|
4347511 |
9929712 |
9.816667 |
0 |
|
Galaxy Server Administration |
Galaxy Monitoring with Telegraf and Grafana |
T00015 |
gxy.io/GTN:T00015 |
https://training.galaxyproject.org//topics/admin/tutorials/monitoring/tutorial.html |
|
|
2019-01-31 |
2026-04-29 |
56 |
True |
True |
True |
False |
|
|
|
0 |
|
4349137 |
9933036 |
6.950000 |
0 |
|
Galaxy Server Administration |
Connecting Galaxy to a compute cluster |
T00002 |
gxy.io/GTN:T00002 |
https://training.galaxyproject.org//topics/admin/tutorials/connect-to-compute-cluster/tutorial.html |
|
|
2018-01-07 |
2025-11-24 |
65 |
True |
True |
True |
False |
|
|
|
0 |
|
4350427 |
9934831 |
10.766667 |
0 |
|
Galaxy Server Administration |
Controlling Galaxy with systemd or Supervisor |
S00023 |
gxy.io/GTN:S00023 |
https://training.galaxyproject.org//topics/admin/tutorials/systemd-supervisor/slides.html |
|
|
2019-01-28 |
2023-04-16 |
5 |
False |
True |
True |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Galaxy Troubleshooting |
S00026 |
gxy.io/GTN:S00026 |
https://training.galaxyproject.org//topics/admin/tutorials/troubleshooting/slides.html |
|
|
2019-01-28 |
2024-06-25 |
15 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Galaxy Monitoring |
S00012 |
gxy.io/GTN:S00012 |
https://training.galaxyproject.org//topics/admin/tutorials/general-monitoring/slides.html |
|
|
2019-04-26 |
2022-03-01 |
5 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Empathy |
S00009 |
gxy.io/GTN:S00009 |
https://training.galaxyproject.org//topics/admin/tutorials/empathy/slides.html |
|
|
2019-01-31 |
2021-04-06 |
4 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Server Maintenance: Cleanup, Backup, and Restoration |
T00324 |
gxy.io/GTN:T00324 |
https://training.galaxyproject.org//topics/admin/tutorials/backup-cleanup/tutorial.html |
Database management, Informatics, Data management |
|
2019-01-31 |
2025-11-24 |
10 |
True |
True |
True |
False |
|
|
|
0 |
|
4346731 |
9928360 |
20.150000 |
0 |
|
Galaxy Server Administration |
Docker and Galaxy |
S00011 |
gxy.io/GTN:S00011 |
https://training.galaxyproject.org//topics/admin/tutorials/galaxy-docker/slides.html |
|
|
2016-09-29 |
2022-10-18 |
16 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927431 |
2.016667 |
0 |
|
Galaxy Server Administration |
Galaxy Installation with Ansible |
T00001 |
gxy.io/GTN:T00001 |
https://training.galaxyproject.org//topics/admin/tutorials/ansible-galaxy/tutorial.html |
Database management, Informatics, Data management |
|
2019-01-28 |
2026-01-23 |
109 |
True |
True |
True |
False |
|
|
|
0 |
|
4372701 |
9976258 |
5.583333 |
0 |
|
Galaxy Server Administration |
Galactic Database |
S00008 |
gxy.io/GTN:S00008 |
https://training.galaxyproject.org//topics/admin/tutorials/database/slides.html |
|
|
2019-01-28 |
2025-11-20 |
6 |
False |
True |
True |
False |
|
|
|
0 |
|
4346006 |
9927432 |
2.016667 |
0 |
|
Galaxy Server Administration |
Setting up Celery Workers for Galaxy |
T00326 |
gxy.io/GTN:T00326 |
https://training.galaxyproject.org//topics/admin/tutorials/celery/tutorial.html |
|
|
2022-07-16 |
2025-11-24 |
19 |
True |
True |
False |
False |
|
|
|
0 |
|
3482478 |
7107144 |
11.183333 |
0 |
|
Galaxy Server Administration |
Advanced customisation of a Galaxy instance |
S00000 |
gxy.io/GTN:S00000 |
https://training.galaxyproject.org//topics/admin/tutorials/advanced-galaxy-customisation/slides.html |
|
|
2017-06-27 |
2023-04-17 |
18 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927432 |
2.016667 |
0 |
|
Galaxy Server Administration |
Data Libraries |
T00005 |
gxy.io/GTN:T00005 |
https://training.galaxyproject.org//topics/admin/tutorials/data-library/tutorial.html |
|
|
2021-01-14 |
2025-11-24 |
35 |
True |
True |
True |
False |
|
|
|
0 |
|
4330917 |
9864976 |
8.883333 |
0 |
|
Galaxy Server Administration |
Reference Data with Data Managers |
T00329 |
gxy.io/GTN:T00329 |
https://training.galaxyproject.org//topics/admin/tutorials/reference-genomes/tutorial.html |
|
Read mapping, Sequence alignment, Generation, Genome indexing |
2019-01-28 |
2026-01-23 |
7 |
True |
True |
False |
False |
data_manager_fetch_genome_all_fasta_dbkey, bwa, bwa_mem_index_builder_data_manager |
|
|
0 |
|
4346834 |
9928451 |
19.916667 |
0 |
|
Galaxy Server Administration |
Galaxy Tool Management with Ephemeris |
T00023 |
gxy.io/GTN:T00023 |
https://training.galaxyproject.org//topics/admin/tutorials/tool-management/tutorial.html |
|
|
2019-01-27 |
2025-04-03 |
39 |
True |
True |
True |
False |
|
|
|
0 |
|
4348429 |
9930726 |
12.200000 |
0 |
|
Galaxy Server Administration |
Gearing towards production |
S00019 |
gxy.io/GTN:S00019 |
https://training.galaxyproject.org//topics/admin/tutorials/production/slides.html |
|
|
2019-01-28 |
2025-11-20 |
11 |
False |
True |
True |
False |
|
|
|
0 |
|
4346006 |
9927432 |
2.016667 |
0 |
|
Galaxy Server Administration |
Running Jobs on Remote Resources with Pulsar |
T00017 |
gxy.io/GTN:T00017 |
https://training.galaxyproject.org//topics/admin/tutorials/pulsar/tutorial.html |
|
|
2019-01-28 |
2026-01-23 |
59 |
True |
True |
True |
False |
|
|
|
0 |
|
4348898 |
9932016 |
9.550000 |
0 |
|
Galaxy Server Administration |
Galaxy Interactive Tools |
T00010 |
gxy.io/GTN:T00010 |
https://training.galaxyproject.org//topics/admin/tutorials/interactive-tools/tutorial.html |
|
|
2020-02-27 |
2026-01-23 |
30 |
True |
True |
True |
False |
|
|
|
0 |
|
4348587 |
9931200 |
9.300000 |
0 |
|
Galaxy Server Administration |
Galaxy Monitoring with gxadmin |
T00009 |
gxy.io/GTN:T00009 |
https://training.galaxyproject.org//topics/admin/tutorials/gxadmin/tutorial.html |
|
|
2019-01-28 |
2025-11-13 |
27 |
True |
True |
True |
False |
|
|
|
0 |
|
4347052 |
9928994 |
16.683333 |
0 |
|
Galaxy Server Administration |
Galaxy Administrator Time Burden and Technology Usage |
S00122 |
gxy.io/GTN:S00122 |
https://training.galaxyproject.org//topics/admin/tutorials/poll-ssa/slides.html |
|
|
2024-07-10 |
2024-07-10 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
2326688 |
4331518 |
1.583333 |
0 |
|
Galaxy Server Administration |
Ansible |
T00000 |
gxy.io/GTN:T00000 |
https://training.galaxyproject.org//topics/admin/tutorials/ansible/tutorial.html |
|
|
2018-07-11 |
2024-08-08 |
48 |
True |
True |
True |
False |
|
|
|
0 |
|
4352819 |
9939374 |
7.683333 |
0 |
|
Galaxy Server Administration |
Server: Other |
S00022 |
gxy.io/GTN:S00022 |
https://training.galaxyproject.org//topics/admin/tutorials/stuff/slides.html |
|
|
2018-01-07 |
2023-02-17 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927433 |
2.016667 |
0 |
|
Galaxy Server Administration |
uWSGI |
S00028 |
gxy.io/GTN:S00028 |
https://training.galaxyproject.org//topics/admin/tutorials/uwsgi/slides.html |
|
|
2019-01-28 |
2022-03-01 |
9 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927433 |
2.016667 |
0 |
|
Galaxy Server Administration |
Enable upload via FTP |
T00008 |
gxy.io/GTN:T00008 |
https://training.galaxyproject.org//topics/admin/tutorials/ftp/tutorial.html |
|
|
2021-06-18 |
2025-12-18 |
29 |
True |
False |
False |
False |
|
|
|
0 |
|
1418 |
1884 |
10.966667 |
0 |
|
Galaxy Server Administration |
Training Infrastructure as a Service (TIaaS) |
T00022 |
gxy.io/GTN:T00022 |
https://training.galaxyproject.org//topics/admin/tutorials/tiaas/tutorial.html |
|
|
2020-02-12 |
2025-11-24 |
45 |
True |
False |
True |
False |
|
|
|
0 |
|
705 |
908 |
14.916667 |
0 |
|
Galaxy Server Administration |
Monitoring Galaxy and Pulsar with Sentry |
T00330 |
gxy.io/GTN:T00330 |
https://training.galaxyproject.org//topics/admin/tutorials/sentry/tutorial.html |
|
|
2023-04-19 |
2025-12-18 |
13 |
True |
False |
False |
False |
|
|
|
0 |
|
317 |
368 |
15.400000 |
0 |
|
Galaxy Server Administration |
Adding file-sources to Galaxy |
T00529 |
gxy.io/GTN:T00529 |
https://training.galaxyproject.org//topics/admin/tutorials/file_sources/tutorial.html |
|
|
2025-01-20 |
2025-01-20 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
136 |
159 |
28.550000 |
0 |
|
Galaxy Server Administration |
Performant Uploads with TUS |
T00024 |
gxy.io/GTN:T00024 |
https://training.galaxyproject.org//topics/admin/tutorials/tus/tutorial.html |
|
|
2022-03-01 |
2025-11-22 |
22 |
True |
False |
True |
False |
|
|
|
0 |
|
1024 |
1445 |
16.416667 |
0 |
|
Galaxy Server Administration |
Alternative Celery Deployment for Galaxy |
T00468 |
gxy.io/GTN:T00468 |
https://training.galaxyproject.org//topics/admin/tutorials/celeryless/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
168 |
179 |
18.500000 |
0 |
|
Galaxy Server Administration |
Upgrading Galaxy |
T00025 |
gxy.io/GTN:T00025 |
https://training.galaxyproject.org//topics/admin/tutorials/upgrading/tutorial.html |
|
|
2021-06-08 |
2026-01-23 |
11 |
True |
False |
True |
False |
|
|
|
0 |
|
871 |
1269 |
8.850000 |
0 |
|
Galaxy Server Administration |
Create a subdomain for your community on UseGalaxy.eu |
T00473 |
gxy.io/GTN:T00473 |
https://training.galaxyproject.org//topics/admin/tutorials/subdomain/tutorial.html |
|
|
2024-11-27 |
2024-12-13 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
122 |
134 |
35.533333 |
0 |
|
Galaxy Server Administration |
Galaxy Monitoring with Reports |
T00018 |
gxy.io/GTN:T00018 |
https://training.galaxyproject.org//topics/admin/tutorials/reports/tutorial.html |
|
|
2019-01-31 |
2026-01-23 |
49 |
True |
False |
False |
False |
|
|
|
0 |
|
613 |
786 |
15.616667 |
0 |
|
Galaxy Server Administration |
Deploying a Beacon v1 in Galaxy |
T00325 |
gxy.io/GTN:T00325 |
https://training.galaxyproject.org//topics/admin/tutorials/beacon/tutorial.html |
|
|
2023-04-16 |
2025-11-22 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
248 |
266 |
21.416667 |
0 |
|
Galaxy Server Administration |
Reference Data with CVMFS without Ansible |
T00004 |
gxy.io/GTN:T00004 |
https://training.galaxyproject.org//topics/admin/tutorials/cvmfs-manual/tutorial.html |
|
|
2020-06-17 |
2026-07-12 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
553 |
711 |
14.000000 |
0 |
|
Galaxy Server Administration |
How I learned to stop worrying and love the systemd |
T00020 |
gxy.io/GTN:T00020 |
https://training.galaxyproject.org//topics/admin/tutorials/stop-worrying-love-systemd/tutorial.html |
|
|
2022-07-06 |
2023-09-28 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
797 |
900 |
7.266667 |
0 |
|
Galaxy Server Administration |
Use Apptainer containers for running Galaxy jobs |
T00323 |
gxy.io/GTN:T00323 |
https://training.galaxyproject.org//topics/admin/tutorials/apptainer/tutorial.html |
|
|
2021-01-08 |
2026-07-12 |
20 |
True |
False |
True |
False |
|
|
|
0 |
|
1317 |
1637 |
11.450000 |
0 |
|
Galaxy Server Administration |
Galaxy Database schema |
T00006 |
gxy.io/GTN:T00006 |
https://training.galaxyproject.org//topics/admin/tutorials/database-schema/tutorial.html |
|
|
2016-07-20 |
2025-04-08 |
23 |
True |
False |
False |
False |
|
|
|
0 |
|
3229 |
5167 |
3.516667 |
0 |
|
Galaxy Server Administration |
Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) |
T00478 |
gxy.io/GTN:T00478 |
https://training.galaxyproject.org//topics/admin/tutorials/onedata-configuration/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
192 |
224 |
25.983333 |
0 |
|
Galaxy Server Administration |
Mapping Jobs to Destinations using TPV |
T00012 |
gxy.io/GTN:T00012 |
https://training.galaxyproject.org//topics/admin/tutorials/job-destinations/tutorial.html |
|
|
2021-01-17 |
2026-01-23 |
44 |
True |
False |
True |
False |
|
|
|
0 |
|
1963 |
2962 |
10.883333 |
0 |
|
Galaxy Server Administration |
Customizing the look of Galaxy (Manual) |
T00328 |
gxy.io/GTN:T00328 |
https://training.galaxyproject.org//topics/admin/tutorials/customization-manual/tutorial.html |
|
|
2023-04-16 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
310 |
357 |
11.533333 |
0 |
|
Galaxy Server Administration |
Customizing the look of Galaxy |
T00327 |
gxy.io/GTN:T00327 |
https://training.galaxyproject.org//topics/admin/tutorials/customization/tutorial.html |
|
|
2023-04-16 |
2025-11-22 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
769 |
916 |
16.550000 |
0 |
|
Galaxy Server Administration |
Automation with Jenkins |
T00011 |
gxy.io/GTN:T00011 |
https://training.galaxyproject.org//topics/admin/tutorials/jenkins/tutorial.html |
|
|
2019-08-06 |
2022-10-18 |
10 |
True |
False |
False |
False |
|
|
|
0 |
|
8477 |
16642 |
1.683333 |
0 |
|
Image Analysis using Deep Learning |
Welcome to the BioImage Model Zoo |
S00106 |
gxy.io/GTN:S00106 |
https://training.galaxyproject.org//topics/ai4life/tutorials/welcome-bioimageio/slides.html |
|
|
2023-05-11 |
2023-05-18 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2986554 |
5851661 |
1.750000 |
0 |
|
Image Analysis using Deep Learning |
BioImage Model Zoo: Advanced models in one-click |
S00105 |
gxy.io/GTN:S00105 |
https://training.galaxyproject.org//topics/ai4life/tutorials/getting-started/slides.html |
|
|
2023-04-18 |
2023-05-24 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3033719 |
5955057 |
1.766667 |
0 |
|
Image Analysis using Deep Learning |
Contribute to the BioImage.IO models |
S00107 |
gxy.io/GTN:S00107 |
https://training.galaxyproject.org//topics/ai4life/tutorials/contribute-materials/slides.html |
|
|
2023-05-18 |
2023-05-24 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2971635 |
5819285 |
1.750000 |
0 |
|
Assembly |
An Introduction to Genome Assembly |
T00034 |
gxy.io/GTN:T00034 |
https://training.galaxyproject.org//topics/assembly/tutorials/general-introduction/tutorial.html |
|
Sequencing quality control, Validation, Sequence assembly validation, Formatting, Statistical calculation, Visualisation, De-novo assembly, Sequence composition calculation |
2017-05-23 |
2026-09-23 |
32 |
True |
True |
True |
True |
velvetg, velveth, fastq_paired_end_interlacer, multiqc, quast, fastqc |
Galaxy Main (US), Galaxy Australia |
Galaxy Europe, Galaxy France, Galaxy Canada, Galaxy Belgium |
0 |
|
4386789 |
9992969 |
8.816667 |
0 |
|
Assembly |
Hybrid genome assembly - Nanopore and Illumina |
T00563 |
gxy.io/GTN:T00563 |
https://training.galaxyproject.org//topics/assembly/tutorials/hybrid_denovo_assembly/tutorial.html |
|
Mapping assembly, Sequencing quality control, Aggregation, Validation, Generation, Sequence assembly validation, Read mapping, Analysis, Cross-assembly, Sequence assembly, Genome assembly, Read alignment, Sequence alignment, Visualisation, De-novo assembly, Genome indexing |
2025-11-03 |
2026-09-23 |
5 |
True |
False |
False |
True |
bwa_mem, busco, pilon, unicycler, multiqc, flye, quast |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
2171 |
2596 |
4.250000 |
0 |
|
Assembly |
Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data |
T00036 |
gxy.io/GTN:T00036 |
https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-illumina/tutorial.html |
Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology |
Sequence contamination filtering, Genome assembly, Sequencing quality control, Sequence assembly validation, Read mapping, Visualisation, Sequence assembly visualisation |
2021-03-24 |
2026-09-23 |
20 |
True |
False |
True |
True |
bandage_info, bandage_image, falco, fastp, quast, upload1, shovill |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Switzerland, Galaxy Canada |
0 |
|
12590 |
18970 |
9.400000 |
0 |
|
Assembly |
Assembly of the mitochondrial genome from PacBio HiFi reads |
T00453 |
gxy.io/GTN:T00453 |
https://training.galaxyproject.org//topics/assembly/tutorials/mitochondrion-assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity, Mitochondria |
|
2024-09-03 |
2026-09-23 |
7 |
True |
False |
True |
True |
mitohifi, compress_file |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
|
0 |
|
1550 |
1836 |
12.033333 |
0 |
|
Assembly |
Large genome assembly and polishing |
T00331 |
gxy.io/GTN:T00331 |
https://training.galaxyproject.org//topics/assembly/tutorials/largegenome/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Mapping assembly, Validation, Box-Whisker plot plotting, Sequence assembly validation, Cross-assembly, Sequence assembly visualisation, Pairwise sequence alignment, Sequence assembly, Visualisation, Sequence contamination filtering, Sequencing quality control, Base-calling, Genome assembly, Statistical calculation, Scatter plot plotting, Variant calling, De-novo assembly, Sequence composition calculation |
2023-03-06 |
2026-09-23 |
17 |
True |
False |
True |
True |
meryl, bandage_image, busco, fasta-stats, genomescope, fastp, multiqc, flye, barchart_gnuplot, nanoplot, minimap2, quast, medaka_consensus_pipeline, racon, fastqc |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
|
0 |
|
8956 |
11464 |
5.516667 |
0 |
|
Assembly |
Genome Assembly Quality Control |
T00028 |
gxy.io/GTN:T00028 |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-quality-control/tutorial.html |
Biodiversity, Sequence assembly, Data quality management |
Genome assembly, Sequence assembly validation, Visualisation, k-mer counting, Phasing, De-novo assembly, Scaffolding |
2022-08-26 |
2026-09-23 |
7 |
True |
True |
False |
True |
meryl, busco, merqury, quast, chromeister |
Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Belgium |
Galaxy Switzerland, Galaxy Canada |
0 |
|
3438093 |
6975208 |
10.066667 |
0 |
|
Assembly |
Genome assembly using PacBio data |
T00531 |
gxy.io/GTN:T00531 |
https://training.galaxyproject.org//topics/assembly/tutorials/hifi-assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Mapping assembly, Genome assembly, Sequence assembly validation, Visualisation, Cross-assembly, De-novo assembly |
2021-11-29 |
2026-09-23 |
3 |
True |
False |
False |
True |
gfa_to_fa, busco, hifiasm, fasta-stats, flye, quast |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France |
Galaxy Canada, Galaxy Norway |
0 |
|
2275 |
2727 |
6.716667 |
0 |
|
Assembly |
Chloroplast genome assembly |
T00030 |
gxy.io/GTN:T00030 |
https://training.galaxyproject.org//topics/assembly/tutorials/chloroplast-assembly/tutorial.html |
|
Mapping assembly, Box-Whisker plot plotting, Generation, Genome visualisation, Read mapping, Analysis, Gene prediction, Coding region prediction, Cross-assembly, Genome annotation, Sequence assembly visualisation, Sequence assembly, Genome assembly, Scatter plot plotting, Read alignment, Sequence alignment, De-novo assembly, Genome indexing |
2020-12-04 |
2026-09-23 |
24 |
True |
False |
True |
True |
bandage_info, bwa_mem, bandage_image, jbrowse, prokka, pilon, fasta-stats, nanoplot, flye, upload1 |
Galaxy Europe |
Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
9176 |
14041 |
8.050000 |
0 |
|
Assembly |
Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) |
T00037 |
gxy.io/GTN:T00037 |
https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-nanopore/tutorial.html |
Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Antimicrobial resistance |
Sequence contamination filtering, Mapping assembly, Sequencing quality control, Box-Whisker plot plotting, Sequence assembly validation, Read mapping, Sequencing error detection, Cross-assembly, Sequence assembly visualisation, Genome assembly, Statistical calculation, Scatter plot plotting, Sequence alignment, Visualisation, Filtering, De-novo assembly, Sequence composition calculation |
2021-03-24 |
2026-09-23 |
17 |
True |
False |
False |
True |
bandage_image, CONVERTER_bz2_to_uncompressed, __EXTRACT_DATASET__, fastp, filtlong, nanoplot, flye, polypolish, porechop, quast, upload1, bwa_mem2, __FLATTEN__, fastqc |
Galaxy Europe, Galaxy Belgium |
Galaxy France, Galaxy Canada |
0 |
|
12219 |
18071 |
7.700000 |
0 |
|
Assembly |
Decontamination of a genome assembly |
T00452 |
gxy.io/GTN:T00452 |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-decontamination/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Data handling, Taxonomic classification |
2024-09-04 |
2026-09-23 |
7 |
True |
False |
True |
True |
Cut1, ncbi_blastn_wrapper, tp_sed_tool, parse_mito_blast, gfastats, kraken2, ncbi_dustmasker_wrapper, tp_cat, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
0 |
|
2555 |
3078 |
8.766667 |
0 |
|
Assembly |
Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data |
T00040 |
gxy.io/GTN:T00040 |
https://training.galaxyproject.org//topics/assembly/tutorials/vgp_workflow_training/tutorial.html |
Sequence assembly, Chromosome conformation capture |
Visualisation, Sequence assembly validation |
2022-04-06 |
2026-09-23 |
29 |
True |
False |
True |
False |
quast |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
5120 |
6685 |
7.116667 |
0 |
|
Assembly |
Making sense of a newly assembled genome |
T00032 |
gxy.io/GTN:T00032 |
https://training.galaxyproject.org//topics/assembly/tutorials/ecoli_comparison/tutorial.html |
Sequence assembly, Genomics, Microbiology |
Sequence alignment, Mapping, Genome visualisation, Sequence visualisation, Read mapping |
2018-06-14 |
2026-09-23 |
32 |
True |
False |
False |
True |
fasta_compute_length, jbrowse, tp_sed_tool, bedtools_complementbed, addValue, upload1, circos_interval_to_tiles, Cut1, fasta_filter_by_length, mergeCols1, tp_grep_tool, circos_aln_to_links, Grep1, random_lines1, tp_replace_in_column, cat1, lastz_wrapper_2, circos, join1, tp_cat, datamash_ops, bedtools_intersectbed, collapse_dataset, bedtools_sortbed, tp_sort_header_tool, Filter1, tp_replace_in_line |
|
|
0 |
|
7184 |
13502 |
8.200000 |
0 |
|
Assembly |
Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads |
T00029 |
gxy.io/GTN:T00029 |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly-with-preprocessing/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Aggregation, Validation, Box-Whisker plot plotting, Read mapping, Data handling, Sequence assembly visualisation, Pairwise sequence alignment, Genome assembly, Sequence file editing, Scatter plot plotting |
2020-04-21 |
2026-09-23 |
15 |
True |
True |
True |
True |
samtools_stats, fasta_filter_by_length, bandage_info, bandage_image, samtools_fastx, samtools_view, fasterq_dump, bowtie2, collapse_dataset, unicycler, fastp, __ZIP_COLLECTION__, multiqc, nanoplot, minimap2, seqtk_sample |
Galaxy Europe, Galaxy Australia |
Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4353005 |
9938793 |
10.683333 |
0 |
|
Assembly |
ERGA post-assembly QC |
T00355 |
gxy.io/GTN:T00355 |
https://training.galaxyproject.org//topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Genotyping, Sequence assembly validation, Data handling, Phasing, Sequence assembly visualisation, Scaffolding, Pairwise sequence alignment, Genome assembly, Sequence trimming, Sequence alignment analysis, Sequence alignment, Visualisation, Data deposition, k-mer counting, Data parsing, De-novo assembly |
2023-06-23 |
2026-09-23 |
9 |
True |
False |
True |
True |
samtools_stats, smudgeplot, __EXTRACT_DATASET__, merqury, minimap2, genomescope, pretext_map, busco, CONVERTER_gz_to_uncompressed, bwa_mem2, meryl, bandage_image, blobtoolkit, pretext_snapshot, collapse_dataset, gfastats, interactive_tool_blobtoolkit, bg_diamond, tp_find_and_replace, bellerophon |
Galaxy Europe |
Galaxy Main (US), Galaxy Australia |
0 |
|
2875 |
3604 |
8.866667 |
0 |
|
Assembly |
Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step |
T00039 |
gxy.io/GTN:T00039 |
https://training.galaxyproject.org//topics/assembly/tutorials/vgp_genome_assembly/tutorial.html |
Genomics, Sequence assembly, Biodiversity |
Primer removal, Sequence assembly validation, Data handling, Phasing, Scaffolding, Pairwise sequence alignment, Genome assembly, Read binning, Mapping, Read pre-processing, Sequence trimming, Sequence alignment, Visualisation, k-mer counting, De-novo assembly |
2021-06-04 |
2026-09-23 |
60 |
True |
False |
True |
True |
tp_cut_tool, merqury, bedtools_bamtobed, minimap2, genomescope, gfa_to_fa, pretext_map, busco, tp_grep_tool, Convert characters1, bionano_scaffold, purge_dups, yahs, quast, bwa_mem2, meryl, hifiasm, cat1, sort1, salsa, pretext_snapshot, cutadapt, collection_column_join, collapse_dataset, Add_a_column1, gfastats, tp_find_and_replace, bellerophon |
|
Galaxy Canada |
0 |
|
20716 |
29642 |
3.116667 |
0 |
|
Assembly |
Unicycler Assembly |
T00038 |
gxy.io/GTN:T00038 |
https://training.galaxyproject.org//topics/assembly/tutorials/unicycler-assembly/tutorial.html |
Sequence assembly, Genomics, Microbiology |
Sequencing quality control, Aggregation, Validation, Sequence assembly validation, Gene prediction, Coding region prediction, Genome annotation, Genome assembly, Statistical calculation, Visualisation, Sequence composition calculation |
2017-10-11 |
2026-09-23 |
27 |
True |
True |
False |
True |
prokka, unicycler, multiqc, quast, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4359944 |
9950806 |
7.050000 |
0 |
|
Assembly |
De Bruijn Graph Assembly |
T00031 |
gxy.io/GTN:T00031 |
https://training.galaxyproject.org//topics/assembly/tutorials/debruijn-graph-assembly/tutorial.html |
|
Sequence assembly, Optimisation and refinement, Genome assembly, De-novo assembly, Formatting, Sequence assembly visualisation |
2017-05-24 |
2026-09-23 |
28 |
True |
True |
False |
True |
bandage_image, velvetoptimiser, velvetg, fasta-stats, velveth, spades |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy Canada |
0 |
|
4353231 |
9938708 |
10.766667 |
0 |
|
Assembly |
Deeper look into Genome Assembly algorithms |
S00029 |
gxy.io/GTN:S00029 |
https://training.galaxyproject.org//topics/assembly/tutorials/algorithms-introduction/slides.html |
|
|
2021-01-12 |
2026-09-23 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4325870 |
9858899 |
2.016667 |
0 |
|
Assembly |
Genome assembly and assembly QC - Introduction short version |
S00138 |
gxy.io/GTN:S00138 |
https://training.galaxyproject.org//topics/assembly/tutorials/assembly_and_qc_short/slides.html |
|
|
2025-04-22 |
2026-09-23 |
5 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1881192 |
3218455 |
1.333333 |
0 |
|
Assembly |
An introduction to get started in genome assembly and annotation |
S00034 |
gxy.io/GTN:S00034 |
https://training.galaxyproject.org//topics/assembly/tutorials/get-started-genome-assembly/slides.html |
|
|
2021-11-30 |
2026-09-23 |
8 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3855833 |
8302381 |
1.933333 |
0 |
|
Earth Data Science |
Introduction to climate data |
S00037 |
gxy.io/GTN:S00037 |
https://training.galaxyproject.org//topics/climate/tutorials/introduction/slides.html |
|
|
2020-10-11 |
2026-07-13 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346006 |
9927435 |
2.016667 |
0 |
|
Earth Data Science |
Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools |
T00044 |
gxy.io/GTN:T00044 |
https://training.galaxyproject.org//topics/climate/tutorials/pangeo/tutorial.html |
|
Visualisation |
2022-02-18 |
2026-09-23 |
8 |
True |
True |
True |
True |
__MERGE_COLLECTION__, xarray_metadata_info, xarray_mapplot, xarray_netcdf2netcdf, __EXTRACT_DATASET__, regexColumn1, ggplot2_point, climate_stripes, xarray_select, graphicsmagick_image_montage, xarray_coords_info |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Canada |
0 |
|
3730778 |
7902638 |
13.700000 |
0 |
|
Earth Data Science |
Ocean's variables study |
T00376 |
gxy.io/GTN:T00376 |
https://training.galaxyproject.org//topics/climate/tutorials/ocean-variables/tutorial.html |
|
|
2023-11-29 |
2025-05-10 |
5 |
True |
False |
False |
True |
interactive_tool_odv, divand_full_analysis, interactive_tool_divand |
Galaxy Europe |
|
0 |
|
353 |
402 |
13.116667 |
0 |
|
Earth Data Science |
Nitrate DMQC for autonomous platforms such as Argo floats |
T00548 |
gxy.io/GTN:T00548 |
https://training.galaxyproject.org//topics/climate/tutorials/ocean_qcv_analysis/tutorial.html |
|
|
2025-08-08 |
2025-09-16 |
3 |
True |
False |
False |
True |
interactive_tool_odv, tool_biogeochemical_calibration, harmonize_insitu_to_netcdf, tool_odv_history, tool_odv |
Galaxy Europe, Galaxy France |
|
0 |
|
178 |
195 |
11.633333 |
0 |
|
Earth Data Science |
Sentinel 5P data visualisation |
T00396 |
gxy.io/GTN:T00396 |
https://training.galaxyproject.org//topics/climate/tutorials/sentinel5_data/tutorial.html |
|
|
2024-01-26 |
2026-08-14 |
4 |
True |
False |
False |
True |
interactive_tool_panoply, interactive_tool_copernicus_notebook |
Galaxy Europe |
|
0 |
|
476 |
530 |
7.016667 |
0 |
|
Earth Data Science |
Analyse Argo data |
T00428 |
gxy.io/GTN:T00428 |
https://training.galaxyproject.org//topics/climate/tutorials/argo_pangeo/tutorial.html |
|
|
2024-03-24 |
2025-05-10 |
2 |
True |
False |
False |
True |
timeseries_extraction, interactive_tool_odv, xarray_metadata_info, argo_getdata, xarray_coords_info |
Galaxy Europe, Galaxy France |
|
0 |
|
471 |
537 |
11.450000 |
0 |
|
Earth Data Science |
Pangeo Notebook in Galaxy - Introduction to Xarray |
T00045 |
gxy.io/GTN:T00045 |
https://training.galaxyproject.org//topics/climate/tutorials/pangeo-notebook/tutorial.html |
|
|
2022-02-18 |
2026-09-23 |
13 |
True |
True |
True |
True |
interactive_tool_pangeo_notebook |
Galaxy Europe |
|
0 |
|
3731088 |
7903261 |
15.166667 |
0 |
|
Earth Data Science |
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) |
T00042 |
gxy.io/GTN:T00042 |
https://training.galaxyproject.org//topics/climate/tutorials/fates/tutorial.html |
|
Visualisation |
2020-10-25 |
2026-09-23 |
20 |
True |
True |
True |
True |
interactive_tool_panoply, xarray_metadata_info, __EXTRACT_DATASET__, ctsm_fates, ggplot2_point, xarray_select, tp_find_and_replace |
Galaxy Europe, Galaxy Main (US) |
|
0 |
|
4347705 |
9930002 |
8.283333 |
0 |
|
Earth Data Science |
Getting your hands-on climate data |
T00041 |
gxy.io/GTN:T00041 |
https://training.galaxyproject.org//topics/climate/tutorials/climate-101/tutorial.html |
|
Visualisation |
2020-04-30 |
2026-07-13 |
16 |
True |
False |
False |
True |
cds_essential_variability, interactive_tool_panoply, tp_awk_tool, ggplot2_point, climate_stripes, Grep1, psy_maps, datamash_ops |
Galaxy Europe |
|
0 |
|
1350 |
1795 |
8.066667 |
0 |
|
Earth Data Science |
Collaboration with JupyterGIS |
T00481 |
gxy.io/GTN:T00481 |
https://training.galaxyproject.org//topics/climate/tutorials/jupytergis_collaboration/tutorial.html |
|
|
2025-04-03 |
2026-08-14 |
6 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
313 |
365 |
9.266667 |
0 |
|
Earth Data Science |
Visualize Climate data with Panoply netCDF viewer |
T00046 |
gxy.io/GTN:T00046 |
https://training.galaxyproject.org//topics/climate/tutorials/panoply/tutorial.html |
|
|
2020-03-05 |
2026-09-23 |
20 |
True |
False |
False |
False |
interactive_tool_panoply |
Galaxy Europe, Galaxy Main (US), Galaxy France |
|
0 |
|
7006 |
11058 |
1.966667 |
0 |
|
Earth Data Science |
Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab |
T00043 |
gxy.io/GTN:T00043 |
https://training.galaxyproject.org//topics/climate/tutorials/fates-jupyterlab/tutorial.html |
|
|
2020-10-25 |
2026-09-23 |
18 |
True |
False |
False |
False |
interactive_tool_jupyter_notebook |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
|
0 |
|
667 |
1079 |
9.666667 |
0 |
|
Earth Data Science |
Ocean Data View (ODV) |
T00375 |
gxy.io/GTN:T00375 |
https://training.galaxyproject.org//topics/climate/tutorials/ocean-data-view/tutorial.html |
|
|
2023-11-27 |
2026-08-14 |
3 |
True |
False |
False |
False |
interactive_tool_odv |
Galaxy Europe, Galaxy France |
|
0 |
|
661 |
778 |
8.933333 |
0 |
|
Earth Data Science |
Getting your hands-on earth data |
T00457 |
gxy.io/GTN:T00457 |
https://training.galaxyproject.org//topics/climate/tutorials/earth_system/tutorial.html |
|
|
2024-10-04 |
2025-05-10 |
2 |
True |
False |
False |
False |
spocc_occ, obis_data, argo_getdata, c3s |
Galaxy Europe, Galaxy Canada |
Galaxy Belgium |
0 |
|
250 |
297 |
18.416667 |
0 |
|
Galaxy Community Building |
What's a Special Interest Group? |
T00444 |
gxy.io/GTN:T00444 |
https://training.galaxyproject.org//topics/community/tutorials/sig_define/tutorial.html |
|
|
2024-07-08 |
2024-12-20 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
250 |
292 |
15.750000 |
0 |
|
Galaxy Community Building |
Creating community content |
T00482 |
gxy.io/GTN:T00482 |
https://training.galaxyproject.org//topics/community/tutorials/community_content/tutorial.html |
|
|
2024-12-20 |
2024-12-20 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
234 |
251 |
11.633333 |
0 |
|
Galaxy Community Building |
Creating a Special Interest Group |
T00443 |
gxy.io/GTN:T00443 |
https://training.galaxyproject.org//topics/community/tutorials/sig_create/tutorial.html |
|
|
2024-07-08 |
2024-12-20 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
319 |
336 |
12.566667 |
0 |
|
Galaxy Community Building |
Creation of a Galaxy tutorial table for your community |
T00558 |
gxy.io/GTN:T00558 |
https://training.galaxyproject.org//topics/community/tutorials/community-tutorial-table/tutorial.html |
|
|
2025-09-17 |
2026-08-12 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
95 |
99 |
12.600000 |
0 |
|
Galaxy Community Building |
Creation of the labs in the different Galaxy instances for your community |
T00561 |
gxy.io/GTN:T00561 |
https://training.galaxyproject.org//topics/community/tutorials/community-lab/tutorial.html |
|
|
2025-10-04 |
2026-08-05 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
152 |
177 |
28.783333 |
0 |
|
Galaxy Community Building |
Creation of resources listing Galaxy workflow for your community |
T00559 |
gxy.io/GTN:T00559 |
https://training.galaxyproject.org//topics/community/tutorials/community-workflow-table/tutorial.html |
|
|
2025-09-17 |
2025-11-27 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
89 |
92 |
41.516667 |
0 |
|
Galaxy Community Building |
Make your tools available on your subdomain |
T00476 |
gxy.io/GTN:T00476 |
https://training.galaxyproject.org//topics/community/tutorials/tools_subdomains/tutorial.html |
|
|
2024-12-03 |
2024-12-20 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
112 |
129 |
32.166667 |
0 |
|
Galaxy Community Building |
Creation of resources listing all the tools and their metadata relevant to your community |
T00475 |
gxy.io/GTN:T00475 |
https://training.galaxyproject.org//topics/community/tutorials/community-tool-table/tutorial.html |
|
|
2024-03-13 |
2026-04-30 |
6 |
True |
False |
False |
False |
|
|
|
0 |
|
221 |
246 |
19.833333 |
0 |
|
Computational Chemistry |
Data management in Medicinal Chemistry |
T00381 |
gxy.io/GTN:T00381 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/med-chem-data/tutorial.html |
|
|
2024-01-08 |
2026-09-23 |
5 |
True |
False |
True |
True |
get_pdb, openbabel_compound_convert, openbabel_svg_depiction, md_converter, ctb_im_rxn_maker, chembl, ctb_silicos_qed |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada |
Galaxy Belgium, Galaxy Norway |
0 |
|
725 |
846 |
12.533333 |
0 |
|
Computational Chemistry |
Running molecular dynamics simulations using GROMACS |
T00051 |
gxy.io/GTN:T00051 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-gromacs/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
15 |
True |
False |
False |
True |
gmx_sim, gmx_setup, get_pdb, tp_grep_tool, gmx_solvate, gmx_em, gmx_editconf |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
29848 |
51497 |
2.450000 |
0 |
|
Computational Chemistry |
Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring |
T00049 |
gxy.io/GTN:T00049 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/covid19-docking/tutorial.html |
|
|
2020-03-27 |
2023-11-09 |
10 |
True |
False |
False |
True |
collapse_dataset, rxdock_rbdock, openbabel_compound_convert, sucos_max_score, rdock_rbcavity, enumerate_charges, split_file_to_collection, xchem_pose_scoring, xchem_transfs_scoring, ctb_frankenstein_ligand, rxdock_rbcavity, rdock_rbdock |
|
|
0 |
|
3489 |
5566 |
9.033333 |
0 |
|
Computational Chemistry |
Protein target prediction of a bioactive ligand with Align-it and ePharmaLib |
T00054 |
gxy.io/GTN:T00054 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/zauberkugel/tutorial.html |
|
|
2022-02-15 |
2024-06-14 |
10 |
True |
False |
False |
True |
rdconf, openbabel_addh, tp_cat, sort1, ctb_alignit, split_file_to_collection |
Galaxy Canada |
|
0 |
|
1557 |
2145 |
10.166667 |
0 |
|
Computational Chemistry |
Running molecular dynamics simulations using NAMD |
T00052 |
gxy.io/GTN:T00052 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-namd/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
9 |
True |
False |
False |
True |
minimizer, namd_nvt, setup, namd_npt |
|
|
0 |
|
4558 |
7434 |
4.583333 |
0 |
|
Computational Chemistry |
High Throughput Molecular Dynamics and Analysis |
T00050 |
gxy.io/GTN:T00050 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/htmd-analysis/tutorial.html |
|
|
2020-05-20 |
2026-09-23 |
20 |
True |
False |
True |
True |
gmx_sim, gmx_setup, get_pdb, ambertools_acpype, tp_grep_tool, bio3d_pca, openbabel_compound_convert, gmx_solvate, bio3d_pca_visualize, md_converter, gmx_em, mdanalysis_cosine_analysis, vmd_hbonds, bio3d_rmsd, gmx_editconf, bio3d_rmsf, gmx_merge_topology_files, gmx_energy |
Galaxy Main (US), Galaxy Australia |
Galaxy Europe, Galaxy Canada, Galaxy Norway |
0 |
|
12629 |
21452 |
4.833333 |
0 |
|
Computational Chemistry |
Analysis of molecular dynamics simulations |
T00047 |
gxy.io/GTN:T00047 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/analysis-md-simulations/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
13 |
True |
False |
False |
True |
mdanalysis_distance, bio3d_pca, mdanalysis_ramachandran_plot, mdanalysis_cosine_analysis, mdanalysis_dihedral, bio3d_rmsd, mdanalysis_rdf, bio3d_rmsf |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
34044 |
59378 |
2.450000 |
0 |
|
Computational Chemistry |
Protein-ligand docking |
T00048 |
gxy.io/GTN:T00048 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/cheminformatics/tutorial.html |
|
|
2019-10-19 |
2026-07-23 |
18 |
True |
False |
False |
True |
get_pdb, openbabel_compound_convert, ctb_obgrep, prepare_receptor, openbabel_svg_depiction, docking, ctb_online_data_fetch, tp_grep_tool, ctb_np-likeness-calculator, ctb_filter, ctb_chemfp_mol2fps, sdf_to_tab, ctb_change_title, ctb_remDuplicates, chembl, fpocket, tp_cat, ctb_remIons, collapse_dataset, ctb_chemfp_nxn_clustering, ctb_chemfp_butina_clustering, prepare_box, ctb_compound_convert, tp_find_and_replace |
|
Galaxy Main (US) |
0 |
|
21687 |
36136 |
3.250000 |
0 |
|
Computational Chemistry |
Setting up molecular systems |
T00053 |
gxy.io/GTN:T00053 |
https://training.galaxyproject.org//topics/computational-chemistry/tutorials/setting-up-molecular-systems/tutorial.html |
|
|
2019-06-03 |
2023-11-09 |
14 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2091 |
2752 |
11.283333 |
0 |
|
Contributing to the Galaxy Training Material |
Overview of the Galaxy Training Material |
S00042 |
gxy.io/GTN:S00042 |
https://training.galaxyproject.org//topics/contributing/tutorials/introduction/slides.html |
|
|
2017-06-25 |
2025-03-14 |
2 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927439 |
2.016667 |
0 |
|
Contributing to the Galaxy Training Material |
FAIR-by-Design methodology |
T00465 |
gxy.io/GTN:T00465 |
https://training.galaxyproject.org//topics/contributing/tutorials/fair-by-design/tutorial.html |
|
|
2024-10-17 |
2026-09-23 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
134 |
143 |
8.883333 |
0 |
|
Contributing to the Galaxy Training Material |
Preview the GTN website as you edit your training material |
T00484 |
gxy.io/GTN:T00484 |
https://training.galaxyproject.org//topics/contributing/tutorials/rendering_gtn/tutorial.html |
|
|
2025-03-14 |
2026-02-04 |
4 |
True |
False |
True |
False |
|
|
|
0 |
|
811 |
1038 |
14.083333 |
0 |
|
Contributing to the Galaxy Training Material |
Creating a new tutorial |
T00057 |
gxy.io/GTN:T00057 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial/tutorial.html |
|
Primer removal, Sequence file editing, Read pre-processing, Sequence trimming, Read mapping, Data handling |
2018-06-20 |
2025-11-20 |
33 |
True |
False |
True |
True |
Cut1, cutadapt, c3s, bowtie2, tp_sed_tool, bam_to_sam, tp_sorted_uniq, tp_cut_tool, fastq_to_tabular, tp_cat, random_lines1, seqtk_subseq, Filter1 |
|
|
0 |
|
2147 |
3041 |
13.383333 |
0 |
|
Contributing to the Galaxy Training Material |
Single Cell Publication - Data Analysis |
T00469 |
gxy.io/GTN:T00469 |
https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-data/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
170 |
174 |
23.033333 |
0 |
|
Contributing to the Galaxy Training Material |
Single Cell Publication - Data Plotting |
T00470 |
gxy.io/GTN:T00470 |
https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-plot/tutorial.html |
|
|
2024-11-07 |
2024-11-07 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
120 |
120 |
11.750000 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR Galaxy Training Material |
T00350 |
gxy.io/GTN:T00350 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-gtn/tutorial.html |
|
|
2023-05-30 |
2026-09-23 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
266 |
305 |
19.650000 |
0 |
|
Contributing to the Galaxy Training Material |
Creating content in Markdown |
T00058 |
gxy.io/GTN:T00058 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-content/tutorial.html |
|
Sequencing quality control, Validation |
2017-06-25 |
2025-04-08 |
85 |
True |
False |
False |
False |
upload1, multiqc |
|
|
0 |
|
4142 |
10209 |
7.416667 |
0 |
|
Contributing to the Galaxy Training Material |
Creating Slides |
S00040 |
gxy.io/GTN:S00040 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-slides/slides.html |
|
|
2018-06-13 |
2024-11-08 |
17 |
False |
True |
True |
False |
|
|
|
0 |
|
4346006 |
9927439 |
2.016667 |
0 |
|
Contributing to the Galaxy Training Material |
Updating tool versions in a tutorial |
T00474 |
gxy.io/GTN:T00474 |
https://training.galaxyproject.org//topics/contributing/tutorials/updating_tutorial/tutorial.html |
|
|
2024-11-29 |
2024-11-29 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
212 |
234 |
26.700000 |
0 |
|
Contributing to the Galaxy Training Material |
Contributing to the Galaxy Training Network with GitHub |
T00483 |
gxy.io/GTN:T00483 |
https://training.galaxyproject.org//topics/contributing/tutorials/github-contribution/tutorial.html |
|
|
2017-06-12 |
2025-03-14 |
2 |
True |
True |
False |
False |
|
|
|
0 |
|
4346292 |
9927749 |
12.866667 |
0 |
|
Contributing to the Galaxy Training Material |
Design and plan session, course, materials |
T00062 |
gxy.io/GTN:T00062 |
https://training.galaxyproject.org//topics/contributing/tutorials/design/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
822 |
1045 |
9.466667 |
0 |
|
Contributing to the Galaxy Training Material |
Including a new topic |
T00056 |
gxy.io/GTN:T00056 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-topic/tutorial.html |
|
|
2018-06-04 |
2025-12-01 |
33 |
True |
False |
False |
False |
|
|
|
0 |
|
1388 |
1852 |
4.766667 |
0 |
|
Contributing to the Galaxy Training Material |
Principles of learning and how they apply to training and teaching |
T00067 |
gxy.io/GTN:T00067 |
https://training.galaxyproject.org//topics/contributing/tutorials/learning-principles/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
17 |
True |
False |
False |
False |
|
|
|
0 |
|
6074 |
7235 |
2.033333 |
0 |
|
Contributing to the Galaxy Training Material |
Tools, Data, and Workflows for tutorials |
T00060 |
gxy.io/GTN:T00060 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-technical/tutorial.html |
|
|
2017-06-25 |
2025-04-08 |
26 |
True |
False |
False |
False |
|
|
|
0 |
|
672 |
870 |
17.366667 |
0 |
|
Contributing to the Galaxy Training Material |
Teaching Python |
T00068 |
gxy.io/GTN:T00068 |
https://training.galaxyproject.org//topics/contributing/tutorials/python/tutorial.html |
|
|
2022-10-19 |
2023-11-23 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
459 |
776 |
13.933333 |
0 |
|
Contributing to the Galaxy Training Material |
Contributing with GitHub via its interface |
T00065 |
gxy.io/GTN:T00065 |
https://training.galaxyproject.org//topics/contributing/tutorials/github-interface-contribution/tutorial.html |
|
|
2018-06-12 |
2023-11-09 |
17 |
True |
False |
False |
False |
|
|
|
0 |
|
770 |
1123 |
13.300000 |
0 |
|
Contributing to the Galaxy Training Material |
Creating Interactive Galaxy Tours |
T00061 |
gxy.io/GTN:T00061 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-tours/tutorial.html |
|
|
2017-06-25 |
2025-04-08 |
13 |
True |
False |
False |
False |
|
|
|
0 |
|
387 |
545 |
12.666667 |
0 |
|
Contributing to the Galaxy Training Material |
Updating diffs in admin training |
T00055 |
gxy.io/GTN:T00055 |
https://training.galaxyproject.org//topics/contributing/tutorials/admin-knitting/tutorial.html |
|
|
2021-06-07 |
2023-11-23 |
9 |
True |
False |
False |
False |
|
|
|
0 |
|
141 |
183 |
20.850000 |
0 |
|
Contributing to the Galaxy Training Material |
Generating PDF artefacts of the website |
T00063 |
gxy.io/GTN:T00063 |
https://training.galaxyproject.org//topics/contributing/tutorials/generating-pdf/tutorial.html |
|
|
2018-06-04 |
2023-11-09 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
138 |
156 |
20.566667 |
0 |
|
Contributing to the Galaxy Training Material |
Adding Quizzes to your Tutorial |
T00059 |
gxy.io/GTN:T00059 |
https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-quiz/tutorial.html |
|
|
2022-05-19 |
2022-10-18 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
186 |
204 |
11.333333 |
0 |
|
Contributing to the Galaxy Training Material |
Adding auto-generated video to your slides |
T00071 |
gxy.io/GTN:T00071 |
https://training.galaxyproject.org//topics/contributing/tutorials/slides-with-video/tutorial.html |
|
|
2020-10-20 |
2023-11-09 |
12 |
True |
False |
False |
False |
|
|
|
0 |
|
356 |
439 |
19.783333 |
0 |
|
Contributing to the Galaxy Training Material |
GTN Metadata |
T00070 |
gxy.io/GTN:T00070 |
https://training.galaxyproject.org//topics/contributing/tutorials/schemas/tutorial.html |
|
|
2022-06-02 |
2024-10-15 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
349 |
437 |
19.800000 |
0 |
|
Using Galaxy and Managing your Data |
Automating Galaxy workflows using the command line |
T00162 |
gxy.io/GTN:T00162 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-automation/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Tree-based sequence alignment, Variant classification, Validation, Read mapping, Visualisation |
2021-06-08 |
2025-12-18 |
11 |
True |
False |
True |
True |
collapse_dataset, falco, pangolin, snpSift_filter, fastp, multiqc, bcftools_consensus, compose_text_param |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland |
0 |
|
3369 |
4175 |
9.083333 |
0 |
|
Using Galaxy and Managing your Data |
Submitting sequence data to ENA |
T00159 |
gxy.io/GTN:T00159 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-data-to-ena/tutorial.html |
|
|
2021-08-10 |
2026-09-23 |
11 |
True |
True |
False |
True |
ena_upload, ena_consensus_submit |
|
Galaxy Belgium |
0 |
|
4016719 |
8837206 |
8.683333 |
0 |
|
Variant Analysis |
From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis |
T00315 |
gxy.io/GTN:T00315 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Validation, Generation, Read mapping, SNP detection, Data handling, Formatting, Sequence alignment, Genome indexing |
2020-06-24 |
2024-06-14 |
16 |
True |
False |
True |
True |
samtools_stats, bwa_mem, picard_MarkDuplicates, lofreq_indelqual, snpeff_sars_cov_2, fasterq_dump, lofreq_viterbi, lofreq_call, tp_cut_tool, fastp, multiqc, Grep1, snpSift_extractFields, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
14513 |
21565 |
6.466667 |
0 |
|
Variant Analysis |
Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data |
T00316 |
gxy.io/GTN:T00316 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2-variant-discovery/tutorial.html |
|
Methylation analysis, Tree-based sequence alignment, Variant calling, Variant classification |
2021-06-30 |
2025-03-28 |
18 |
True |
False |
True |
False |
pangolin, fasta_regex_finder, datamash_ops, Filter1, nextclade, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy Canada |
|
0 |
|
7951 |
13911 |
7.550000 |
0 |
|
Sequence Analysis |
Removal of human reads from SARS-CoV-2 sequencing data |
T00236 |
gxy.io/GTN:T00236 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/human-reads-removal/tutorial.html |
|
Sequence file editing, Generation, Read mapping, Sequence alignment, Data handling, Genome indexing |
2021-08-04 |
2023-11-09 |
5 |
True |
False |
False |
True |
samtools_fastx, trimmomatic, bwa_mem, __UNZIP_COLLECTION__, __ZIP_COLLECTION__, Grep1, seqtk_subseq, tp_replace_in_line |
Galaxy Main (US), Galaxy France |
Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4368 |
6108 |
9.383333 |
0 |
|
Using Galaxy and Managing your Data |
SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis |
T00155 |
gxy.io/GTN:T00155 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/ncbi-sarf/tutorial.html |
|
SNP detection, Data handling |
2021-05-31 |
2024-06-14 |
12 |
True |
True |
True |
False |
fasterq_dump, snpeff_sars_cov_2, jq, fastq_to_fasta_python, tp_cat, query_tabular, fastq_dump |
Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy Europe, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
4118286 |
9173339 |
11.566667 |
0 |
|
Sequence Analysis |
SARS-CoV-2 Viral Sample Alignment and Variant Visualization |
T00356 |
gxy.io/GTN:T00356 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/sars-with-galaxy-on-anvil/tutorial.html |
|
Sequence composition calculation, Sequencing quality control, Statistical calculation, Generation, Genome visualisation, Read mapping, Sequence alignment, Genome indexing |
2023-07-10 |
2026-09-23 |
3 |
True |
False |
False |
False |
bwa_mem, jbrowse, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland, Galaxy Canada |
0 |
|
1841 |
2322 |
11.533333 |
0 |
|
Foundations of Data Science |
A (very) brief history of genomics |
T00382 |
gxy.io/GTN:T00382 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture1/tutorial.html |
|
|
2024-01-09 |
2024-02-20 |
2 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2611232 |
5026468 |
37.450000 |
0 |
|
Foundations of Data Science |
Python - Warm-up for statistics and machine learning |
T00485 |
gxy.io/GTN:T00485 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-warmup-stat-ml/tutorial.html |
|
|
2025-03-11 |
2025-03-11 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
327 |
384 |
8.366667 |
0 |
|
Foundations of Data Science |
Introduction to Python |
T00083 |
gxy.io/GTN:T00083 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-basics/tutorial.html |
|
|
2021-11-08 |
2024-10-15 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1940 |
2481 |
9.633333 |
0 |
|
Foundations of Data Science |
Python - Math |
T00094 |
gxy.io/GTN:T00094 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-math/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1246 |
1507 |
9.150000 |
0 |
|
Foundations of Data Science |
R basics in Galaxy |
T00103 |
gxy.io/GTN:T00103 |
https://training.galaxyproject.org//topics/data-science/tutorials/r-basics/tutorial.html |
|
|
2019-10-08 |
2024-06-14 |
11 |
True |
False |
True |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
3210 |
4269 |
9.450000 |
0 |
|
Foundations of Data Science |
Python - Functions |
T00089 |
gxy.io/GTN:T00089 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-functions/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1126 |
1304 |
7.583333 |
0 |
|
Foundations of Data Science |
Advanced R in Galaxy |
T00102 |
gxy.io/GTN:T00102 |
https://training.galaxyproject.org//topics/data-science/tutorials/r-advanced/tutorial.html |
|
|
2019-12-09 |
2024-10-15 |
11 |
True |
False |
True |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
1807 |
2741 |
11.566667 |
0 |
|
Foundations of Data Science |
Data visualisation Olympics - Visualization in R |
T00353 |
gxy.io/GTN:T00353 |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-viz-r/tutorial.html |
|
|
2023-06-16 |
2024-05-07 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
851 |
968 |
10.416667 |
0 |
|
Foundations of Data Science |
Advanced Python |
T00081 |
gxy.io/GTN:T00081 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-advanced-np-pd/tutorial.html |
|
|
2021-11-08 |
2026-09-23 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
707 |
896 |
13.683333 |
0 |
|
Foundations of Data Science |
Introduction to sequencing with Python (part one) |
T00397 |
gxy.io/GTN:T00397 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture2/tutorial.html |
|
|
2024-01-23 |
2024-02-20 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
434 |
507 |
13.683333 |
0 |
|
Foundations of Data Science |
dplyr & tidyverse for data processing |
T00104 |
gxy.io/GTN:T00104 |
https://training.galaxyproject.org//topics/data-science/tutorials/r-dplyr/tutorial.html |
|
|
2021-10-20 |
2026-09-23 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
800 |
991 |
8.000000 |
0 |
|
Foundations of Data Science |
Data Manipulation Olympics - SQL |
T00078 |
gxy.io/GTN:T00078 |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-sql/tutorial.html |
|
|
2023-06-16 |
2024-05-07 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1017 |
1119 |
2.716667 |
0 |
|
Foundations of Data Science |
Plotting in Python |
T00096 |
gxy.io/GTN:T00096 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-plotting/tutorial.html |
|
|
2021-11-08 |
2026-09-23 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
715 |
843 |
13.016667 |
0 |
|
Foundations of Data Science |
Introduction to sequencing with Python (part two) |
T00398 |
gxy.io/GTN:T00398 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture3/tutorial.html |
|
|
2024-01-23 |
2024-02-20 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
231 |
246 |
4.666667 |
0 |
|
Foundations of Data Science |
Python - Basic Types & Type Conversion |
T00099 |
gxy.io/GTN:T00099 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-types/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
512 |
791 |
12.550000 |
0 |
|
Foundations of Data Science |
Data Manipulation Olympics - JQ |
T00352 |
gxy.io/GTN:T00352 |
https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-jq/tutorial.html |
|
|
2023-06-16 |
2024-05-07 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
569 |
623 |
10.200000 |
0 |
|
Foundations of Data Science |
Introduction to sequencing with Python (part three) |
T00404 |
gxy.io/GTN:T00404 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture4/tutorial.html |
|
|
2024-02-06 |
2024-02-20 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
301 |
322 |
18.116667 |
0 |
|
Foundations of Data Science |
Python - Lists & Strings & Dictionaries |
T00091 |
gxy.io/GTN:T00091 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-iterables/tutorial.html |
|
|
2022-04-25 |
2024-06-25 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2491 |
2891 |
3.533333 |
0 |
|
Foundations of Data Science |
Introduction to sequencing with Python (part four) |
T00411 |
gxy.io/GTN:T00411 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture5/tutorial.html |
|
|
2024-02-13 |
2024-02-20 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
237 |
253 |
4.150000 |
0 |
|
Foundations of Data Science |
Python - Flow Control |
T00088 |
gxy.io/GTN:T00088 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-flow/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
404 |
458 |
19.250000 |
0 |
|
Foundations of Data Science |
Python - Loops |
T00093 |
gxy.io/GTN:T00093 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-loops/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
566 |
651 |
9.216667 |
0 |
|
Foundations of Data Science |
Data manipulation with Pandas |
T00419 |
gxy.io/GTN:T00419 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture6/tutorial.html |
|
|
2024-02-20 |
2025-02-27 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
156 |
168 |
16.533333 |
0 |
|
Foundations of Data Science |
Python - Files & CSV |
T00087 |
gxy.io/GTN:T00087 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-files/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
736 |
833 |
6.316667 |
0 |
|
Foundations of Data Science |
Versioning your code and data with git |
T00425 |
gxy.io/GTN:T00425 |
https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture7/tutorial.html |
|
|
2024-03-12 |
2024-03-12 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
62 |
63 |
83.116667 |
0 |
|
Foundations of Data Science |
Python - Try & Except |
T00086 |
gxy.io/GTN:T00086 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-exceptions/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
716 |
802 |
4.516667 |
0 |
|
Foundations of Data Science |
Python - Introductory Graduation |
T00084 |
gxy.io/GTN:T00084 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-basics-recap/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
321 |
366 |
19.250000 |
0 |
|
Foundations of Data Science |
Virtual Environments For Software Development |
T00101 |
gxy.io/GTN:T00101 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-venv/tutorial.html |
|
|
2022-10-19 |
2023-05-18 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
353 |
376 |
9.333333 |
0 |
|
Foundations of Data Science |
Python - Type annotations |
T00100 |
gxy.io/GTN:T00100 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-typing/tutorial.html |
|
|
2022-10-19 |
2023-02-13 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
723 |
761 |
7.583333 |
0 |
|
Foundations of Data Science |
Python - Testing |
T00098 |
gxy.io/GTN:T00098 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-testing/tutorial.html |
|
|
2022-10-19 |
2023-02-13 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
313 |
337 |
15.333333 |
0 |
|
Foundations of Data Science |
Python - Argparse |
T00082 |
gxy.io/GTN:T00082 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-argparse/tutorial.html |
|
|
2022-04-25 |
2023-01-24 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1489 |
1609 |
2.883333 |
0 |
|
Foundations of Data Science |
Conda Environments For Software Development |
T00085 |
gxy.io/GTN:T00085 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-conda/tutorial.html |
|
|
2022-10-19 |
2023-05-18 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
886 |
942 |
4.966667 |
0 |
|
Foundations of Data Science |
Python - Globbing |
T00090 |
gxy.io/GTN:T00090 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-glob/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
654 |
697 |
8.033333 |
0 |
|
Foundations of Data Science |
Python - Subprocess |
T00097 |
gxy.io/GTN:T00097 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-subprocess/tutorial.html |
|
|
2022-04-25 |
2023-02-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1304 |
1495 |
4.466667 |
0 |
|
Foundations of Data Science |
Python - Coding Style |
T00092 |
gxy.io/GTN:T00092 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-linting/tutorial.html |
|
|
2022-11-03 |
2023-05-18 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
348 |
363 |
18.550000 |
0 |
|
Foundations of Data Science |
Python - Multiprocessing |
T00095 |
gxy.io/GTN:T00095 |
https://training.galaxyproject.org//topics/data-science/tutorials/python-multiprocessing/tutorial.html |
|
|
2022-10-19 |
2023-11-16 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1003 |
1068 |
4.433333 |
0 |
|
Foundations of Data Science |
Learning about one gene across biological resources and formats |
T00359 |
gxy.io/GTN:T00359 |
https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-gene/tutorial.html |
|
|
2023-09-07 |
2026-09-23 |
5 |
True |
True |
True |
False |
ncbi_blastp_wrapper |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Switzerland, Galaxy Norway |
0 |
|
2768561 |
5376897 |
22.483333 |
0 |
|
Foundations of Data Science |
CLI basics |
T00076 |
gxy.io/GTN:T00076 |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-basics/tutorial.html |
|
|
2021-09-30 |
2024-10-15 |
10 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1408 |
1916 |
10.683333 |
0 |
|
Foundations of Data Science |
Basics of using Git from the Command Line |
T00079 |
gxy.io/GTN:T00079 |
https://training.galaxyproject.org//topics/data-science/tutorials/git-cli/tutorial.html |
|
|
2022-06-16 |
2023-11-16 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
247 |
495 |
11.900000 |
0 |
|
Foundations of Data Science |
Version Control with Git |
T00072 |
gxy.io/GTN:T00072 |
https://training.galaxyproject.org//topics/data-science/tutorials/bash-git/tutorial.html |
|
|
2022-07-06 |
2023-10-23 |
6 |
True |
False |
False |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
469 |
707 |
8.066667 |
0 |
|
Foundations of Data Science |
Advanced SQL |
T00106 |
gxy.io/GTN:T00106 |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-advanced/tutorial.html |
|
|
2021-10-11 |
2024-12-13 |
9 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1608 |
1981 |
4.000000 |
0 |
|
Foundations of Data Science |
Advanced CLI in Galaxy |
T00074 |
gxy.io/GTN:T00074 |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-advanced/tutorial.html |
|
|
2021-09-30 |
2024-10-15 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1164 |
1430 |
10.316667 |
0 |
|
Foundations of Data Science |
Variant Calling Workflow |
T00073 |
gxy.io/GTN:T00073 |
https://training.galaxyproject.org//topics/data-science/tutorials/bash-variant-calling/tutorial.html |
|
|
2022-07-07 |
2023-10-23 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
10573 |
13722 |
4.100000 |
0 |
|
Foundations of Data Science |
One protein along the UniProt page |
T00360 |
gxy.io/GTN:T00360 |
https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-protein/tutorial.html |
|
|
2023-09-07 |
2026-03-30 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
776 |
828 |
6.950000 |
0 |
|
Foundations of Data Science |
SQL Educational Game - Murder Mystery |
T00108 |
gxy.io/GTN:T00108 |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-game/tutorial.html |
|
|
2021-10-11 |
2023-11-23 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
842 |
911 |
6.233333 |
0 |
|
Foundations of Data Science |
Introduction to SQL |
T00107 |
gxy.io/GTN:T00107 |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-basic/tutorial.html |
|
|
2021-10-11 |
2024-12-13 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
819 |
990 |
9.566667 |
0 |
|
Foundations of Data Science |
SQL with Python |
T00109 |
gxy.io/GTN:T00109 |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-python/tutorial.html |
|
|
2021-10-11 |
2023-11-16 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
596 |
780 |
9.533333 |
0 |
|
Foundations of Data Science |
CLI Educational Game - Bashcrawl |
T00075 |
gxy.io/GTN:T00075 |
https://training.galaxyproject.org//topics/data-science/tutorials/cli-bashcrawl/tutorial.html |
|
|
2021-09-30 |
2024-10-15 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2475 |
2789 |
2.716667 |
0 |
|
Foundations of Data Science |
Make & Snakemake |
T00105 |
gxy.io/GTN:T00105 |
https://training.galaxyproject.org//topics/data-science/tutorials/snakemake/tutorial.html |
|
|
2021-11-18 |
2026-09-23 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3813 |
4823 |
2.833333 |
0 |
|
Foundations of Data Science |
SQL with R |
T00110 |
gxy.io/GTN:T00110 |
https://training.galaxyproject.org//topics/data-science/tutorials/sql-r/tutorial.html |
|
|
2021-10-11 |
2023-11-16 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
714 |
875 |
7.516667 |
0 |
|
Development in Galaxy |
Architecture 03 - Galaxy Architecture Principles |
S00151 |
gxy.io/GTN:S00151 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-principles/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Generic plugins |
T00121 |
gxy.io/GTN:T00121 |
https://training.galaxyproject.org//topics/dev/tutorials/visualization-generic/tutorial.html |
|
|
2016-09-30 |
2023-11-09 |
21 |
True |
True |
False |
False |
|
|
|
0 |
|
4346473 |
9928066 |
11.650000 |
0 |
|
Development in Galaxy |
Architecture 01 - Galaxy Ecosystem and Projects |
S00145 |
gxy.io/GTN:S00145 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-ecosystem/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 04 - Galaxy Files and Directory Structure |
S00147 |
gxy.io/GTN:S00147 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-files/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Tool Dependencies and Conda |
S00045 |
gxy.io/GTN:S00045 |
https://training.galaxyproject.org//topics/dev/tutorials/conda/slides.html |
|
|
2017-06-20 |
2023-04-14 |
33 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Galaxy Interactive Environments |
S00048 |
gxy.io/GTN:S00048 |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-environments/slides.html |
|
|
2017-02-05 |
2023-02-17 |
16 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Architecture 07 - Galaxy Task Management with Celery |
S00155 |
gxy.io/GTN:S00155 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-tasks/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Galaxy Interactive Tours |
S00049 |
gxy.io/GTN:S00049 |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-tours/slides.html |
|
|
2017-01-12 |
2021-07-27 |
14 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Architecture 09 - Galaxy Plugin Architecture |
S00150 |
gxy.io/GTN:S00150 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-plugins/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 02 - Galaxy Project Management and Contribution |
S00153 |
gxy.io/GTN:S00153 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-project-management/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Tool development and integration into Galaxy |
S00051 |
gxy.io/GTN:S00051 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-integration/slides.html |
|
|
2016-09-30 |
2025-04-08 |
30 |
external |
True |
False |
False |
|
|
|
0 |
|
4346023 |
9927466 |
6.016667 |
0 |
|
Development in Galaxy |
Architecture 10 - Galaxy File Sources Architecture |
S00146 |
gxy.io/GTN:S00146 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-file-sources/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
JavaScript plugins |
T00120 |
gxy.io/GTN:T00120 |
https://training.galaxyproject.org//topics/dev/tutorials/visualization-charts/tutorial.html |
|
|
2017-06-22 |
2025-04-08 |
20 |
True |
True |
False |
False |
|
|
|
0 |
|
4346831 |
9928410 |
9.766667 |
0 |
|
Development in Galaxy |
Architecture 05 - Galaxy Web Frameworks |
S00148 |
gxy.io/GTN:S00148 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-frameworks/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Scripting Galaxy using the API and BioBlend |
T00111 |
gxy.io/GTN:T00111 |
https://training.galaxyproject.org//topics/dev/tutorials/bioblend-api/tutorial.html |
|
|
2017-01-17 |
2023-11-16 |
22 |
True |
True |
True |
False |
|
|
|
0 |
|
4346915 |
9928593 |
15.266667 |
0 |
|
Development in Galaxy |
Architecture 16 - Galaxy Testing |
S00156 |
gxy.io/GTN:S00156 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-tests/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 08 - Galaxy Application Components: Models, Managers, and Services |
S00141 |
gxy.io/GTN:S00141 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-application-components/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 06 - Dependency Injection in Galaxy |
S00144 |
gxy.io/GTN:S00144 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-dependency-injection/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 13 - Galaxy Dependencies Management |
S00143 |
gxy.io/GTN:S00143 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-dependencies/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Prerequisites for building software/conda packages |
S00046 |
gxy.io/GTN:S00046 |
https://training.galaxyproject.org//topics/dev/tutorials/conda_sys/slides.html |
|
|
2018-02-15 |
2021-05-28 |
6 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Architecture 11 - Galaxy Markdown Architecture |
S00149 |
gxy.io/GTN:S00149 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-markdown/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 12 - Galaxy Client Architecture |
S00142 |
gxy.io/GTN:S00142 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-client/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Tool Dependencies and Containers |
S00047 |
gxy.io/GTN:S00047 |
https://training.galaxyproject.org//topics/dev/tutorials/containers/slides.html |
|
|
2017-06-20 |
2022-10-18 |
14 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Tool Shed: sharing Galaxy tools |
S00052 |
gxy.io/GTN:S00052 |
https://training.galaxyproject.org//topics/dev/tutorials/toolshed/slides.html |
|
|
2017-06-12 |
2022-10-18 |
15 |
False |
True |
False |
False |
|
|
|
0 |
|
4346006 |
9927446 |
2.016667 |
0 |
|
Development in Galaxy |
Galaxy Webhooks |
T00122 |
gxy.io/GTN:T00122 |
https://training.galaxyproject.org//topics/dev/tutorials/webhooks/tutorial.html |
|
|
2017-04-03 |
2025-04-08 |
16 |
True |
True |
False |
False |
|
|
|
0 |
|
4346271 |
9927775 |
17.850000 |
0 |
|
Development in Galaxy |
ToolFactory: Generating Tools From Simple Scripts |
T00118 |
gxy.io/GTN:T00118 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-generators/tutorial.html |
|
|
2021-05-26 |
2024-06-14 |
10 |
True |
True |
True |
False |
|
|
|
0 |
|
4125955 |
9198415 |
10.133333 |
0 |
|
Development in Galaxy |
Architecture 14 - Galaxy Startup Process |
S00154 |
gxy.io/GTN:S00154 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-startup/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Architecture 15 - Galaxy Production Deployment |
S00152 |
gxy.io/GTN:S00152 |
https://training.galaxyproject.org//topics/dev/tutorials/architecture-production/slides.html |
|
|
2026-02-19 |
2026-02-19 |
1 |
False |
True |
False |
False |
|
|
|
0 |
|
847836 |
1451055 |
1.433333 |
0 |
|
Development in Galaxy |
Setting up a dev Onedata instance |
T00486 |
gxy.io/GTN:T00486 |
https://training.galaxyproject.org//topics/dev/tutorials/onedata-dev-instance/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
|
0 |
|
110 |
114 |
31.000000 |
0 |
|
Development in Galaxy |
Contributing a New Feature to Galaxy Core |
T00113 |
gxy.io/GTN:T00113 |
https://training.galaxyproject.org//topics/dev/tutorials/core-contributing/tutorial.html |
|
|
2021-06-08 |
2026-02-19 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
902 |
1281 |
14.216667 |
0 |
|
Development in Galaxy |
Adding and updating best practice metadata for Galaxy tools using the bio.tools registry |
T00421 |
gxy.io/GTN:T00421 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-annotation/tutorial.html |
|
|
2024-03-06 |
2024-11-06 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
388 |
447 |
14.150000 |
0 |
|
Development in Galaxy |
Creating Galaxy tools from Conda Through Deployment |
T00117 |
gxy.io/GTN:T00117 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-from-scratch/tutorial.html |
|
|
2021-06-15 |
2024-10-08 |
15 |
True |
False |
True |
False |
|
|
|
0 |
|
3123 |
4892 |
6.133333 |
0 |
|
Development in Galaxy |
nb2workflow: Generating Galaxy Tools From Jupyter Notebooks |
T00567 |
gxy.io/GTN:T00567 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-from-notebook/tutorial.html |
|
|
2025-12-04 |
2025-12-04 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
131 |
138 |
9.883333 |
0 |
|
Development in Galaxy |
ToolFactory: Generating Tools From More Complex Scripts |
T00119 |
gxy.io/GTN:T00119 |
https://training.galaxyproject.org//topics/dev/tutorials/tool-generators-advanced/tutorial.html |
|
|
2021-05-26 |
2024-09-27 |
12 |
True |
False |
True |
False |
|
|
|
0 |
|
554 |
640 |
13.950000 |
0 |
|
Development in Galaxy |
Debugging Galaxy |
T00115 |
gxy.io/GTN:T00115 |
https://training.galaxyproject.org//topics/dev/tutorials/debugging/tutorial.html |
|
|
2021-06-15 |
2026-02-19 |
16 |
True |
False |
False |
False |
|
|
|
0 |
|
750 |
1357 |
11.750000 |
0 |
|
Development in Galaxy |
Writing Automated Tests for Galaxy |
T00123 |
gxy.io/GTN:T00123 |
https://training.galaxyproject.org//topics/dev/tutorials/writing_tests/tutorial.html |
|
|
2022-07-15 |
2026-02-19 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
376 |
804 |
18.216667 |
0 |
|
Development in Galaxy |
Data source integration |
T00114 |
gxy.io/GTN:T00114 |
https://training.galaxyproject.org//topics/dev/tutorials/data-source-integration/tutorial.html |
|
|
2016-09-30 |
2022-10-18 |
15 |
True |
False |
False |
False |
|
|
|
0 |
|
303 |
413 |
12.566667 |
0 |
|
Development in Galaxy |
Contributing to BioBlend as a developer |
T00112 |
gxy.io/GTN:T00112 |
https://training.galaxyproject.org//topics/dev/tutorials/bioblend-dev/tutorial.html |
|
|
2021-05-25 |
2023-11-09 |
8 |
True |
False |
False |
False |
|
|
|
0 |
|
352 |
443 |
18.716667 |
0 |
|
Development in Galaxy |
Galaxy Interactive Tools |
T00116 |
gxy.io/GTN:T00116 |
https://training.galaxyproject.org//topics/dev/tutorials/interactive-tools/tutorial.html |
|
|
2022-03-02 |
2026-10-01 |
10 |
True |
False |
False |
False |
|
|
|
0 |
|
1520 |
1973 |
9.116667 |
0 |
|
Digital Humanities |
Introduction to Digital Humanities in Galaxy |
T00557 |
gxy.io/GTN:T00557 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/introduction_to_dh/tutorial.html |
|
|
2025-09-11 |
2026-09-23 |
11 |
True |
False |
False |
True |
wordcloud, diff, Remove beginning1, tp_grep_tool, tp_find_and_replace, tp_replace_in_line |
Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
|
0 |
|
446 |
522 |
9.950000 |
0 |
|
Digital Humanities |
Montreal Forced Aligner |
T00585 |
gxy.io/GTN:T00585 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/mfa_tutorial/tutorial.html |
|
|
2026-07-22 |
2026-09-23 |
4 |
True |
False |
False |
True |
unzip, mfa_g2p, mfa_find_oovs, mfa_merge, mfa_align |
Galaxy Europe |
|
0 |
|
126 |
136 |
7.500000 |
0 |
|
Digital Humanities |
Text-Mining Differences in Chinese Newspaper Articles |
T00530 |
gxy.io/GTN:T00530 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/text_mining_chinese/tutorial.html |
|
|
2025-02-28 |
2026-09-23 |
8 |
True |
False |
False |
True |
Cut1, wordcloud, diff, Add_a_column1, tp_sort_header_tool, Grep1, datamash_ops, tp_replace_in_line |
Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
|
0 |
|
459 |
497 |
7.950000 |
0 |
|
Digital Humanities |
OpenRefine Tutorial for researching cultural data |
T00560 |
gxy.io/GTN:T00560 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/open-refine-tutorial/tutorial.html |
|
|
2025-09-24 |
2026-09-23 |
4 |
True |
False |
False |
True |
Cut1, wordcloud, Remove beginning1, tp_grep_tool, tp_head_tool, tp_sort_header_tool, regexColumn1, filter_tabular, barchart_gnuplot, param_value_from_file, datamash_ops, interactive_tool_openrefine, compose_text_param |
Galaxy Europe |
|
0 |
|
371 |
410 |
12.666667 |
0 |
|
Digital Humanities |
Transcribing Audio and Video files with Automated Speech Recognition |
T00577 |
gxy.io/GTN:T00577 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/Whisper_speech_recognition/tutorial.html |
|
|
2026-04-08 |
2026-09-23 |
2 |
True |
False |
False |
True |
tp_find_and_replace, tp_grep_tool, whisperx |
Galaxy Europe, Galaxy Switzerland |
|
0 |
|
221 |
239 |
8.933333 |
0 |
|
Digital Humanities |
Analysing Solar Eclipse Frequency with a Galaxy Workflow |
T00593 |
gxy.io/GTN:T00593 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/solar-eclipse-frequency/tutorial.html |
|
|
2026-09-21 |
2026-09-23 |
3 |
True |
False |
False |
True |
compose_text_param, tp_sorted_uniq, tp_awk_tool, Convert characters1, sort1, Filter1, tp_replace_in_line |
Galaxy France, Galaxy Switzerland |
|
0 |
|
42 |
51 |
8.150000 |
0 |
|
Digital Humanities |
Text-Mining articles with GROBID |
T00590 |
gxy.io/GTN:T00590 |
https://training.galaxyproject.org//topics/digital-humanities/tutorials/grobid/tutorial.html |
|
|
2026-08-13 |
2026-08-13 |
1 |
True |
False |
False |
False |
tesseract, grobid_dataset_annotate, grobid_grobid, Grep1 |
Galaxy Europe |
|
0 |
|
50 |
50 |
0.116667 |
0 |
|
Ecology |
Object detection with YOLO |
T00580 |
gxy.io/GTN:T00580 |
https://training.galaxyproject.org//topics/ecology/tutorials/yolo_predict_deepsea/tutorial.html |
|
|
2026-05-06 |
2026-05-08 |
3 |
True |
False |
False |
True |
yolo_training, yolo_predict, unzip |
Galaxy Europe |
Galaxy Canada |
0 |
|
183 |
211 |
30.983333 |
0 |
|
Ecology |
Biodiversity data exploration |
T00126 |
gxy.io/GTN:T00126 |
https://training.galaxyproject.org//topics/ecology/tutorials/biodiversity-data-exploration/tutorial.html |
|
|
2022-03-01 |
2026-09-23 |
17 |
True |
False |
True |
True |
ecology_link_between_var, ecology_beta_diversity, tool_anonymization, Remove beginning1, ecology_presence_abs_abund, tp_cut_tool, regexColumn1, ecology_stat_presence_abs, ecology_homogeneity_normality |
Galaxy Europe, Galaxy Belgium |
Galaxy France, Galaxy Canada |
0 |
|
1913 |
2624 |
12.083333 |
0 |
|
Ecology |
SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos |
T00579 |
gxy.io/GTN:T00579 |
https://training.galaxyproject.org//topics/ecology/tutorials/SAM3/tutorial.html |
|
|
2026-05-07 |
2026-05-12 |
3 |
True |
False |
False |
False |
interactive_tool_anylabeling, sam3_semantic_segmentation |
Galaxy Europe |
Galaxy France |
0 |
|
291 |
331 |
14.983333 |
0 |
|
Ecology |
Phylodiversity analysis quick tutorial |
T00538 |
gxy.io/GTN:T00538 |
https://training.galaxyproject.org//topics/ecology/tutorials/phylodiversity_workflow/tutorial.html |
|
|
2025-06-06 |
2026-09-23 |
3 |
True |
False |
False |
False |
phylogenetic_occupancy_matcher, crsconverter, estimate_endem, phylo_index |
Galaxy Europe |
Galaxy France, Galaxy Canada |
0 |
|
214 |
248 |
27.500000 |
0 |
|
Ecology |
Metabarcoding/eDNA through Obitools |
T00124 |
gxy.io/GTN:T00124 |
https://training.galaxyproject.org//topics/ecology/tutorials/Obitools-metabarcoding/tutorial.html |
|
Sequencing quality control, Statistical calculation, Sequence composition calculation |
2022-02-28 |
2026-09-23 |
14 |
True |
False |
True |
True |
Cut1, ncbi_blastn_wrapper, obi_annotate, unzip, wc_gnu, obi_clean, obi_ngsfilter, obi_uniq, obi_grep, obi_tab, join1, obi_stat, fastq_groomer, obi_illumina_pairend, Filter1, seq_filter_by_id, fastqc |
Galaxy Europe, Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy France, Galaxy Canada |
0 |
|
5279 |
7239 |
4.300000 |
0 |
|
Ecology |
Species distribution modeling |
T00135 |
gxy.io/GTN:T00135 |
https://training.galaxyproject.org//topics/ecology/tutorials/species-distribution-modeling/tutorial.html |
|
|
2019-07-04 |
2026-05-07 |
19 |
True |
False |
False |
True |
spocc_occ, tabular_to_csv, tp_cut_tool, tp_find_and_replace, interactive_tool_wallace, Filter1 |
Galaxy Europe, Galaxy France |
|
0 |
|
3679 |
5408 |
4.716667 |
0 |
|
Ecology |
Checking expected species and contamination in bacterial isolate |
T00423 |
gxy.io/GTN:T00423 |
https://training.galaxyproject.org//topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.html |
Whole genome sequencing, Genomics, Microbiology, Microbial ecology |
Statistical calculation, Taxonomic classification, Cross-assembly, Expression analysis |
2024-03-04 |
2026-04-08 |
6 |
True |
False |
False |
True |
est_abundance, upload1, recentrifuge, kraken2 |
Galaxy Europe, Galaxy France |
Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
0 |
|
1168 |
1538 |
9.466667 |
0 |
|
Ecology |
Sentinel 2 biodiversity |
T00333 |
gxy.io/GTN:T00333 |
https://training.galaxyproject.org//topics/ecology/tutorials/remote-sensing/tutorial.html |
|
|
2023-04-13 |
2025-12-08 |
7 |
True |
False |
False |
True |
srs_diversity_maps, srs_pca, srs_process_data, srs_preprocess_s2, srs_spectral_indices, srs_global_indices |
Galaxy Europe, Galaxy France, Galaxy Canada |
|
0 |
|
771 |
959 |
10.166667 |
0 |
|
Ecology |
Visualization of Climate Data using NetCDF xarray Map Plotting |
T00136 |
gxy.io/GTN:T00136 |
https://training.galaxyproject.org//topics/ecology/tutorials/x-array-map-plot/tutorial.html |
|
|
2022-10-26 |
2026-09-23 |
10 |
True |
False |
False |
True |
xarray_metadata_info, xarray_mapplot, cdo_operations, graphicsmagick_image_montage, xarray_coords_info |
Galaxy Europe, Galaxy Belgium |
Galaxy Canada |
0 |
|
2721 |
3111 |
3.650000 |
0 |
|
Ecology |
Cleaning GBIF data for the use in Ecology |
T00129 |
gxy.io/GTN:T00129 |
https://training.galaxyproject.org//topics/ecology/tutorials/gbif_cleaning/tutorial.html |
|
|
2022-10-28 |
2025-06-03 |
6 |
True |
False |
False |
True |
spocc_occ, gdal_ogr2ogr, Summary_Statistics1, Count1, Filter1 |
Galaxy Europe, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
947 |
1128 |
5.950000 |
0 |
|
Ecology |
Life Traits Ecoregionalization workflow |
T00537 |
gxy.io/GTN:T00537 |
https://training.galaxyproject.org//topics/ecology/tutorials/ecoregiolifetraits/tutorial.html |
|
|
2025-06-02 |
2026-05-07 |
4 |
True |
False |
False |
False |
unzip, WormsMeasurements, ecoregion_taxa_seeker, tp_cut_tool, regexColumn1, column_remove_by_header, ecoregion_brt_analysis, ecoregion_GeoNearestNeighbor, ClaraGuess, ecoregion_eco_map, Filter1 |
Galaxy Europe |
Galaxy France, Galaxy Canada |
0 |
|
141 |
146 |
31.850000 |
0 |
|
Ecology |
Compute and analyze biodiversity metrics with PAMPA toolsuite |
T00125 |
gxy.io/GTN:T00125 |
https://training.galaxyproject.org//topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.html |
|
|
2020-11-19 |
2026-09-23 |
25 |
True |
False |
True |
True |
pampa_plotglm, datamash_transpose, mergeCols1, pampa_glmcomm, pampa_communitymetrics, tp_easyjoin_tool, tp_sort_header_tool, tp_cut_tool, regexColumn1, regex1, pampa_presabs, pampa_glmsp, tp_cat, Count1, Filter1 |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada |
0 |
|
1244 |
1621 |
11.666667 |
0 |
|
Ecology |
RAD-Seq de-novo data analysis |
T00128 |
gxy.io/GTN:T00128 |
https://training.galaxyproject.org//topics/ecology/tutorials/de-novo-rad-seq/tutorial.html |
|
Sequence composition calculation, Data handling, Statistical calculation, Sequencing quality control |
2017-02-14 |
2026-09-23 |
16 |
True |
False |
False |
True |
stacks_populations, stacks_procrad, stacks_denovomap, fastqc |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
2905 |
4521 |
5.916667 |
0 |
|
Ecology |
Marine Omics identifying biosynthetic gene clusters |
T00450 |
gxy.io/GTN:T00450 |
https://training.galaxyproject.org//topics/ecology/tutorials/marine_omics_bgc/tutorial.html |
|
Protein feature detection, Sequence motif recognition, Genome annotation |
2024-08-19 |
2025-06-03 |
3 |
True |
False |
False |
True |
interproscan, sanntis_marine, SanntiS_marine, prodigal, regex1 |
|
|
0 |
|
385 |
425 |
18.616667 |
0 |
|
Ecology |
Obis marine indicators |
T00332 |
gxy.io/GTN:T00332 |
https://training.galaxyproject.org//topics/ecology/tutorials/obisindicators/tutorial.html |
Biodiversity, Ecology, Data mining |
|
2023-04-11 |
2026-05-19 |
10 |
True |
False |
False |
True |
obis_data, obisindicators, tp_cut_tool |
Galaxy Europe, Galaxy Belgium |
Galaxy France, Galaxy Canada |
0 |
|
468 |
563 |
13.183333 |
0 |
|
Ecology |
Preparing genomic data for phylogeny reconstruction |
T00132 |
gxy.io/GTN:T00132 |
https://training.galaxyproject.org//topics/ecology/tutorials/phylogeny-data-prep/tutorial.html |
|
Genome annotation, Multiple sequence alignment, Sequence trimming, Sequence assembly validation, Genetic variation analysis, Sequence clustering, Sequence analysis |
2022-10-21 |
2026-09-23 |
6 |
True |
False |
False |
True |
proteinortho_grab_proteins, collapse_dataset, busco, proteinortho, repeatmasker_wrapper, funannotate_predict, clipkit, clustalw, glimmer_gbk_to_orf, regex1, phykit_alignment_based, Filter1, tp_replace_in_line |
Galaxy Belgium |
|
0 |
|
2626 |
3536 |
6.900000 |
0 |
|
Ecology |
Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS |
T00399 |
gxy.io/GTN:T00399 |
https://training.galaxyproject.org//topics/ecology/tutorials/Metashrimps_tutorial/tutorial.html |
|
|
2024-01-22 |
2026-09-23 |
8 |
True |
False |
False |
False |
interactive_tool_metashrimps |
Galaxy Europe |
|
0 |
|
204 |
216 |
9.733333 |
0 |
|
Ecology |
Data submission using ENA upload Tool |
T00487 |
gxy.io/GTN:T00487 |
https://training.galaxyproject.org//topics/ecology/tutorials/ENA_Biodiv_submission/tutorial.html |
|
Primer removal, Sequencing quality control, Validation, Read pre-processing, Sequence trimming, Read mapping, Visualisation |
2024-12-13 |
2026-07-24 |
4 |
True |
False |
False |
False |
ncbi_blastn_wrapper, cutadapt, Paste1, falco, collection_element_identifiers, __RELABEL_FROM_FILE__, fastq_filter, ab1_fastq_converter, __FILTER_EMPTY_DATASETS__, fastq_to_fasta_python, multiqc, bg_uniq, regex1, fastq_groomer |
Galaxy Europe |
|
0 |
|
504 |
528 |
5.416667 |
0 |
|
Ecology |
From NDVI data with OpenEO to time series visualisation with Holoviews |
T00400 |
gxy.io/GTN:T00400 |
https://training.galaxyproject.org//topics/ecology/tutorials/ndvi_openeo/tutorial.html |
|
|
2024-01-24 |
2024-06-29 |
3 |
True |
False |
False |
True |
interactive_tool_holoviz, interactive_tool_copernicus_notebook |
Galaxy Europe |
|
0 |
|
324 |
369 |
14.200000 |
0 |
|
Ecology |
Ecoregionalization workflow tutorial |
T00455 |
gxy.io/GTN:T00455 |
https://training.galaxyproject.org//topics/ecology/tutorials/Ecoregionalization_tutorial/tutorial.html |
|
|
2024-09-16 |
2026-05-22 |
8 |
True |
False |
False |
True |
ecoregion_clara_cluster, mergeCols1, unzip, ecoregion_cluster_estimate, ecoregion_taxa_seeker, interactive_tool_jupyter_notebook, tp_cut_tool, regexColumn1, ecoregion_brt_analysis, ecoregion_GeoNearestNeighbor, filter_tabular, ecoregion_eco_map |
Galaxy Europe |
|
0 |
|
541 |
658 |
11.850000 |
0 |
|
Ecology |
Champs blocs indicators |
T00127 |
gxy.io/GTN:T00127 |
https://training.galaxyproject.org//topics/ecology/tutorials/champs-blocs/tutorial.html |
|
|
2023-01-04 |
2026-05-07 |
13 |
True |
False |
False |
True |
cb_dissim, cb_ivr, cb_eco, cb_div, cb_qecb |
|
|
0 |
|
270 |
428 |
25.650000 |
0 |
|
Ecology |
Regional GAM |
T00134 |
gxy.io/GTN:T00134 |
https://training.galaxyproject.org//topics/ecology/tutorials/regionalGAM/tutorial.html |
Ecology |
Visualisation |
2019-07-04 |
2026-09-23 |
20 |
True |
False |
False |
True |
regionalgam_flight_curve, Paste1, regionalgam_gls, mergeCols1, regionalgam_ab_index, flight-curve, Remove beginning1, regionalgam_autocor_acf, regionalgam_glmmpql, csv2tab_R, tp_awk_tool, regexColumn1, ggplot2_point, tab2csv_R, Count1, Filter1, regionalgam_plot_trend |
|
|
0 |
|
447 |
565 |
16.033333 |
0 |
|
Ecology |
RAD-Seq Reference-based data analysis |
T00133 |
gxy.io/GTN:T00133 |
https://training.galaxyproject.org//topics/ecology/tutorials/ref-based-rad-seq/tutorial.html |
|
Sequencing quality control, Validation, Generation, Read mapping, Data handling, Sequence composition calculation, Statistical calculation, Sequence alignment, Genome indexing |
2017-02-14 |
2026-09-23 |
17 |
True |
False |
False |
True |
Cut1, bwa_wrapper, stacks_procrad, regex_replace, cat1, stacks_refmap, tp_sort_header_tool, stacks_populations, addValue, bwa, Convert characters1, Grep1, multiqc, Summary_Statistics1, Count1, Filter1, tp_replace_in_line, fastqc |
|
|
0 |
|
3824 |
5701 |
5.550000 |
0 |
|
Ecology |
Taxonomic Analysis of eDNA |
T00536 |
gxy.io/GTN:T00536 |
https://training.galaxyproject.org//topics/ecology/tutorials/eDNA-taxonomic-analysis/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control |
2025-06-02 |
2026-09-23 |
4 |
True |
False |
False |
True |
ncbi_blastn_wrapper, fastp, Count1, cshl_fastq_to_fasta |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
932 |
1114 |
7.483333 |
0 |
|
Ecology |
Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities |
T00422 |
gxy.io/GTN:T00422 |
https://training.galaxyproject.org//topics/ecology/tutorials/MetaShARK_tutorial/tutorial.html |
|
|
2024-03-04 |
2026-09-23 |
10 |
True |
False |
False |
False |
interactive_tool_metashark |
Galaxy Europe, Galaxy France |
|
0 |
|
402 |
467 |
5.133333 |
0 |
|
Ecology |
RAD-Seq to construct genetic maps |
T00130 |
gxy.io/GTN:T00130 |
https://training.galaxyproject.org//topics/ecology/tutorials/genetic-map-rad-seq/tutorial.html |
|
Data handling |
2017-02-14 |
2026-09-23 |
15 |
True |
False |
False |
True |
stacks_genotypes, stacks_denovomap |
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
1044 |
1406 |
9.650000 |
0 |
|
Ecology |
Audio data annotation with NEAL (Nature + Energy Audio labeler) |
T00562 |
gxy.io/GTN:T00562 |
https://training.galaxyproject.org//topics/ecology/tutorials/NEAL_tutorial/tutorial.html |
|
|
2025-10-14 |
2025-11-06 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
167 |
187 |
16.666667 |
0 |
|
Ecology |
Visualize EBV cube data with Panoply netCDF viewer |
T00131 |
gxy.io/GTN:T00131 |
https://training.galaxyproject.org//topics/ecology/tutorials/panoply_ebv/tutorial.html |
|
|
2022-10-28 |
2026-05-07 |
10 |
True |
False |
False |
False |
interactive_tool_panoply |
Galaxy Europe, Galaxy Main (US), Galaxy France |
|
0 |
|
380 |
449 |
11.116667 |
0 |
|
Ecology |
Cleaning GBIF data using OpenRefine |
T00488 |
gxy.io/GTN:T00488 |
https://training.galaxyproject.org//topics/ecology/tutorials/openrefine_gbif/tutorial.html |
|
|
2025-01-21 |
2026-05-07 |
7 |
True |
False |
False |
False |
interactive_tool_openrefine, regex1 |
Galaxy Europe, Galaxy France |
|
0 |
|
339 |
396 |
7.050000 |
0 |
|
Ecology |
QGIS Web Feature Services |
T00367 |
gxy.io/GTN:T00367 |
https://training.galaxyproject.org//topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.html |
|
|
2023-10-11 |
2026-05-07 |
7 |
True |
False |
False |
False |
interactive_tool_qgis |
Galaxy Europe, Galaxy France |
|
0 |
|
454 |
504 |
12.350000 |
0 |
|
Statistics and Machine Learning |
Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences |
T00520 |
gxy.io/GTN:T00520 |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-pretraining/tutorial.html |
|
|
2025-04-17 |
2026-07-13 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2377 |
2958 |
4.400000 |
0 |
|
Statistics and Machine Learning |
Fine-tuning a LLM for DNA Sequence Classification |
T00519 |
gxy.io/GTN:T00519 |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-finetuning/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1326 |
1644 |
4.250000 |
0 |
|
Statistics and Machine Learning |
Neural networks using Python |
T00526 |
gxy.io/GTN:T00526 |
https://training.galaxyproject.org//topics/statistics/tutorials/neural-networks-with-python/tutorial.html |
|
|
2025-03-11 |
2025-03-11 |
1 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1960480 |
3410647 |
12.683333 |
0 |
|
Statistics and Machine Learning |
Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM |
T00523 |
gxy.io/GTN:T00523 |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-zeroshot-prediction/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
494 |
571 |
9.366667 |
0 |
|
Statistics and Machine Learning |
Deep Learning (without Generative Artificial Intelligence) using Python |
T00517 |
gxy.io/GTN:T00517 |
https://training.galaxyproject.org//topics/statistics/tutorials/deep-learning-without-gai-with-python/tutorial.html |
|
|
2025-03-11 |
2025-03-11 |
1 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1960477 |
3410643 |
31.033333 |
0 |
|
Statistics and Machine Learning |
Generating Artificial Yeast DNA Sequences using a DNA LLM |
T00521 |
gxy.io/GTN:T00521 |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-generation/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
384 |
427 |
5.150000 |
0 |
|
Statistics and Machine Learning |
Optimizing DNA Sequences for Biological Functions using a DNA LLM |
T00522 |
gxy.io/GTN:T00522 |
https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-optimization/tutorial.html |
|
|
2025-04-17 |
2025-05-22 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
122 |
144 |
11.400000 |
0 |
|
Statistics and Machine Learning |
Regulations/standards for AI using DOME |
T00518 |
gxy.io/GTN:T00518 |
https://training.galaxyproject.org//topics/statistics/tutorials/dome/tutorial.html |
|
|
2025-03-11 |
2025-05-19 |
3 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1960593 |
3410773 |
20.416667 |
0 |
|
Teaching and Hosting Galaxy Training |
Assessment and feedback in training and teachings |
T00276 |
gxy.io/GTN:T00276 |
https://training.galaxyproject.org//topics/teaching/tutorials/assessment/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
1486 |
1714 |
4.783333 |
0 |
|
Teaching and Hosting Galaxy Training |
Train-the-Trainer: putting it all together |
T00354 |
gxy.io/GTN:T00354 |
https://training.galaxyproject.org//topics/teaching/tutorials/workshop-final-exercise/tutorial.html |
|
|
2023-06-12 |
2025-03-11 |
3 |
True |
False |
False |
False |
|
|
|
0 |
|
179 |
201 |
29.216667 |
0 |
|
Teaching and Hosting Galaxy Training |
Motivation and Demotivation |
T00282 |
gxy.io/GTN:T00282 |
https://training.galaxyproject.org//topics/teaching/tutorials/motivation_demotivation/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
|
0 |
|
2147 |
2544 |
3.383333 |
0 |
|
Teaching and Hosting Galaxy Training |
Training techniques to enhance learner participation and engagement |
T00280 |
gxy.io/GTN:T00280 |
https://training.galaxyproject.org//topics/teaching/tutorials/learner_participation_engagement/tutorial.html |
|
|
2022-09-23 |
2025-03-11 |
14 |
True |
False |
False |
False |
|
|
|
0 |
|
1856 |
2162 |
3.033333 |
0 |
|
Statistics and Machine Learning |
Foundational Aspects of Machine Learning using Python |
T00524 |
gxy.io/GTN:T00524 |
https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-python/tutorial.html |
|
|
2025-03-11 |
2025-05-19 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1497 |
1808 |
5.316667 |
0 |
|
Epigenetics |
Introduction to ChIP-Seq data analysis |
S00059 |
gxy.io/GTN:S00059 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-chip-seq/slides.html |
|
|
2017-06-12 |
2024-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346006 |
9927447 |
2.016667 |
0 |
|
Epigenetics |
Introduction to DNA Methylation data analysis |
S00060 |
gxy.io/GTN:S00060 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-dna-methylation/slides.html |
|
|
2016-10-05 |
2024-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346006 |
9927447 |
2.016667 |
0 |
|
Epigenetics |
Formation of the Super-Structures on the Inactive X |
T00140 |
gxy.io/GTN:T00140 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/formation_of_super-structures_on_xi/tutorial.html |
|
Primer removal, Peak calling, Sequencing quality control, Pathway visualisation, Genome visualisation, Enrichment analysis, Read mapping, Structure visualisation, Gene regulatory network analysis, Read pre-processing, Sequence trimming, Mapping, Visualisation |
2018-09-17 |
2026-10-02 |
18 |
True |
True |
False |
True |
deeptools_plot_fingerprint, trim_galore, deeptools_plot_heatmap, bowtie2, macs2_callpeak, samtools_idxstats, bbgtobigwig, deeptools_compute_matrix, falco, cat1, deeptools_plot_correlation, bedtools_mergebed, __FLATTEN__, deeptools_multi_bam_summary, jbrowse2, bedtools_sortbed, deeptools_bam_compare, deeptools_bam_coverage, Filter1 |
Galaxy Europe, Galaxy Main (US) |
Galaxy Canada |
0 |
|
4352778 |
9940327 |
9.850000 |
0 |
|
Epigenetics |
Infinium Human Methylation BeadChip |
T00139 |
gxy.io/GTN:T00139 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/ewas-suite/tutorial.html |
|
|
2018-08-27 |
2026-09-23 |
22 |
True |
True |
False |
True |
Cut1, clusterprofiler_bitr, chipeakanno_annopeaks, Remove beginning1, minfi_analysis, clusterprofiler_go |
Galaxy Europe, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
4348340 |
9931005 |
8.850000 |
0 |
|
Epigenetics |
Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) |
T00143 |
gxy.io/GTN:T00143 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/tal1-binding-site-identification/tutorial.html |
ChIP-seq |
Peak calling, Sequencing quality control, Generation, Enrichment analysis, Read mapping, Formatting, Gene regulatory network analysis, Mapping, Sequence alignment, Visualisation, Genome indexing |
2016-12-20 |
2026-09-30 |
13 |
True |
False |
False |
True |
Cut1, deeptools_plot_fingerprint, samtools_idxstats, trimmomatic, deeptools_compute_matrix, falco, deeptools_plot_heatmap, deeptools_correct_gc_bias, deeptools_plot_correlation, macs2_callpeak, bwa, deeptools_compute_gc_bias, deeptools_bam_compare, deeptools_multi_bam_summary, bedtools_intersectbed, pygenomeTracks |
|
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
0 |
|
8004 |
14421 |
7.466667 |
0 |
|
Epigenetics |
Identification of the binding sites of the Estrogen receptor |
T00138 |
gxy.io/GTN:T00138 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/estrogen-receptor-binding-site-identification/tutorial.html |
|
Primer removal, Peak calling, Sequencing quality control, Enrichment analysis, Read mapping, Gene regulatory network analysis, Statistical calculation, Read pre-processing, Sequence trimming, Sequence composition calculation |
2017-09-18 |
2026-09-23 |
11 |
True |
False |
False |
True |
deeptools_plot_fingerprint, samtools_idxstats, deeptools_compute_matrix, trim_galore, bowtie2, deeptools_plot_heatmap, bam_to_sam, deeptools_plot_correlation, macs2_callpeak, deeptools_compute_gc_bias, deeptools_bam_compare, fastqc, deeptools_bam_coverage, deeptools_multi_bam_summary |
Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Norway |
0 |
|
2161 |
3105 |
7.066667 |
0 |
|
Epigenetics |
ATAC-Seq data analysis |
T00137 |
gxy.io/GTN:T00137 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/atac-seq/tutorial.html |
|
Peak calling, Sequencing quality control, Primer removal, Enrichment analysis, Read mapping, Data handling, Formatting, Gene regulatory network analysis, Mapping, Read pre-processing, Sequence trimming, Visualisation, Sequence alignment analysis |
2019-09-02 |
2026-09-28 |
26 |
True |
True |
True |
True |
deeptools_plot_heatmap, bamFilter, bedtools_bamtobed, Cut1, bowtie2, macs2_callpeak, Grep1, wig_to_bigWig, pygenomeTracks, pe_histogram, samtools_idxstats, deeptools_compute_matrix, falco, bedtools_intersectbed, __FLATTEN__, cutadapt, picard_MarkDuplicates, tp_sort_header_tool, Filter1 |
|
|
0 |
|
4416239 |
10050753 |
4.816667 |
0 |
|
Epigenetics |
Hi-C analysis of Drosophila melanogaster cells using HiCExplorer |
T00141 |
gxy.io/GTN:T00141 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/hicexplorer/tutorial.html |
|
Read mapping, Visualisation, Formatting |
2018-02-23 |
2026-09-23 |
32 |
True |
False |
False |
True |
hicexplorer_hicmergematrixbins, hicexplorer_hicfindrestrictionsites, hicexplorer_hicdetectloops, hicexplorer_hicpca, bowtie2, hicexplorer_hicinfo, hicexplorer_hicbuildmatrix, hicexplorer_hicplotmatrix, hicexplorer_hicfindtads, pygenomeTracks, hicexplorer_hiccorrectmatrix |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy Canada, Galaxy Norway |
0 |
|
8470 |
13745 |
3.983333 |
0 |
|
Epigenetics |
CUT&RUN data analysis |
T00424 |
gxy.io/GTN:T00424 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/cut_and_run/tutorial.html |
|
Primer removal, Peak calling, Sequencing quality control, Validation, Enrichment analysis, Read mapping, Data handling, Formatting, Gene regulatory network analysis, Read pre-processing, Sequence trimming, Mapping, Visualisation, Sequence alignment analysis |
2024-03-06 |
2026-09-28 |
7 |
True |
False |
False |
True |
deeptools_plot_fingerprint, datamash_transpose, trim_galore, deeptools_plot_heatmap, bamFilter, __EXTRACT_DATASET__, bedtools_bamtobed, Cut1, bowtie2, macs2_callpeak, multiqc, Grep1, wig_to_bigWig, pe_histogram, deeptools_compute_matrix, falco, meme_chip, idr, bedtools_intersectbed, __FLATTEN__, picard_MarkDuplicates, Extract genomic DNA 1 |
|
|
0 |
|
9005 |
11316 |
2.666667 |
0 |
|
Epigenetics |
DNA Methylation data analysis |
T00142 |
gxy.io/GTN:T00142 |
https://training.galaxyproject.org//topics/epigenetics/tutorials/methylation-seq/tutorial.html |
Epigenomics |
Sequencing quality control, Statistical calculation, Read mapping, Visualisation, Sequence composition calculation |
2017-02-16 |
2026-09-23 |
25 |
True |
False |
False |
True |
deeptools_compute_matrix, falco, deeptools_plot_profile, tp_awk_tool, pileometh, wig_to_bigWig, bwameth, replace_column_with_key_value_file, tp_tail_tool, metilene, fastqc |
|
|
0 |
|
16770 |
27148 |
4.750000 |
0 |
|
Evolution |
Phylogenetics - Back to basics |
T00440 |
gxy.io/GTN:T00440 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo/tutorial.html |
|
Phylogenetic tree analysis, Multiple sequence alignment, Phylogenetic tree generation, Sequence analysis, Phylogenetic analysis, Phylogenetic tree reconstruction |
2024-05-10 |
2026-09-23 |
2 |
True |
False |
False |
True |
newick_display, fasttree, iqtree, rbc_mafft |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
8520 |
10768 |
3.916667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Introduction |
S00116 |
gxy.io/GTN:S00116 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-intro/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Terminology |
S00120 |
gxy.io/GTN:S00120 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-terminology/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Multiple Sequence Alignment |
S00118 |
gxy.io/GTN:S00118 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-msa/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Building Trees |
S00121 |
gxy.io/GTN:S00121 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-trees/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Estimating trees from alignments |
S00117 |
gxy.io/GTN:S00117 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-mle-trees/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Phylogenetics - Back to Basics - Phylogenetic Networks |
S00119 |
gxy.io/GTN:S00119 |
https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-networks/slides.html |
|
|
2024-05-10 |
2024-05-10 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2412059 |
4548750 |
1.616667 |
0 |
|
Evolution |
Tree thinking for tuberculosis evolution and epidemiology |
T00144 |
gxy.io/GTN:T00144 |
https://training.galaxyproject.org//topics/evolution/tutorials/mtb_phylogeny/tutorial.html |
Genomics, Microbiology, Phylogeny, Infectious disease |
Sequence analysis, Phylogenetic tree analysis |
2022-03-16 |
2025-06-04 |
12 |
True |
False |
False |
True |
upload1, interactive_tool_rstudio, raxml |
Galaxy Europe |
|
0 |
|
2796 |
3922 |
8.783333 |
0 |
|
Evolution |
Identifying tuberculosis transmission links: from SNPs to transmission clusters |
T00145 |
gxy.io/GTN:T00145 |
https://training.galaxyproject.org//topics/evolution/tutorials/mtb_transmission/tutorial.html |
Genomics, Microbiology, Infectious disease, DNA polymorphism |
Antimicrobial resistance prediction, Phylogenetic tree generation, Variant calling, Phylogenetic tree visualisation |
2022-03-16 |
2025-05-26 |
13 |
True |
False |
False |
True |
tp_sed_tool, clustering_from_distmat, tp_easyjoin_tool, tb_profiler_profile, bcftools_consensus, upload1, addName, samtools_view, __MERGE_COLLECTION__, snp_sites, tp_grep_tool, snippy, Grep1, trimmomatic, tb_variant_filter, tp_cat, collapse_dataset, snp_dists, tp_replace_in_line |
Galaxy Europe |
Galaxy Canada |
0 |
|
3954 |
5598 |
7.933333 |
0 |
|
Evolution |
Phylogenetic analysis for bacterial comparative genomics |
T00489 |
gxy.io/GTN:T00489 |
https://training.galaxyproject.org//topics/evolution/tutorials/bacterial-comparative-genomics/tutorial.html |
Genomics, Microbiology, Phylogeny |
|
2025-03-14 |
2026-09-23 |
2 |
True |
False |
False |
False |
fasttree, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland |
0 |
|
280 |
330 |
19.950000 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR in a nutshell |
T00351 |
gxy.io/GTN:T00351 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-intro/tutorial.html |
|
|
2023-05-30 |
2024-04-30 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1195 |
1482 |
9.950000 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR and its Origins |
T00433 |
gxy.io/GTN:T00433 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-origin/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
287 |
314 |
7.783333 |
0 |
|
FAIR Data, Workflows, and Research |
Making clinical datasets FAIR |
T00368 |
gxy.io/GTN:T00368 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-clinical/tutorial.html |
|
|
2023-10-24 |
2024-09-13 |
5 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
494 |
609 |
13.600000 |
0 |
|
FAIR Data, Workflows, and Research |
Workflow Run RO-Crate Introduction |
T00343 |
gxy.io/GTN:T00343 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-workflow-run-ro-crate/tutorial.html |
|
|
2023-05-11 |
2023-05-11 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
544 |
649 |
5.916667 |
0 |
|
FAIR Data, Workflows, and Research |
Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub |
T00454 |
gxy.io/GTN:T00454 |
https://training.galaxyproject.org//topics/fair/tutorials/data-management-peatlands/tutorial.html |
|
|
2024-09-13 |
2024-09-13 |
1 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
182 |
216 |
7.066667 |
0 |
|
FAIR Data, Workflows, and Research |
RO-Crate - Introduction |
T00348 |
gxy.io/GTN:T00348 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-intro/tutorial.html |
|
|
2023-05-23 |
2025-04-08 |
5 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
822 |
1041 |
9.583333 |
0 |
|
FAIR Data, Workflows, and Research |
Sequence data submission to ENA |
T00369 |
gxy.io/GTN:T00369 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-ena/tutorial.html |
|
|
2023-11-01 |
2024-06-25 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
954 |
1087 |
5.666667 |
0 |
|
FAIR Data, Workflows, and Research |
DataPLANT ARCs |
T00466 |
gxy.io/GTN:T00466 |
https://training.galaxyproject.org//topics/fair/tutorials/dataplant-arcs/tutorial.html |
|
|
2024-10-22 |
2026-09-23 |
5 |
True |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2169581 |
3923630 |
12.950000 |
0 |
|
FAIR Data, Workflows, and Research |
Exporting Workflow Run RO-Crates from Galaxy |
T00340 |
gxy.io/GTN:T00340 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-galaxy/tutorial.html |
|
Visualisation |
2023-05-11 |
2026-09-21 |
9 |
True |
False |
False |
False |
Cut1, Grouping1, Remove beginning1, csv_to_tabular, tp_sorted_uniq, ggplot2_point, datamash_ops |
|
|
0 |
|
436 |
513 |
13.333333 |
0 |
|
FAIR Data, Workflows, and Research |
Metadata |
T00432 |
gxy.io/GTN:T00432 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-metadata/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
372 |
424 |
10.783333 |
0 |
|
FAIR Data, Workflows, and Research |
RO-Crate in Python |
T00341 |
gxy.io/GTN:T00341 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-python/tutorial.html |
|
|
2023-05-11 |
2025-04-08 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
382 |
420 |
12.850000 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR data management solutions |
T00349 |
gxy.io/GTN:T00349 |
https://training.galaxyproject.org//topics/fair/tutorials/data-management/tutorial.html |
|
|
2023-05-30 |
2025-01-16 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
534 |
629 |
13.650000 |
0 |
|
FAIR Data, Workflows, and Research |
Data Registration |
T00431 |
gxy.io/GTN:T00431 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-data-registration/tutorial.html |
|
|
2024-03-26 |
2024-09-27 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
184 |
193 |
8.566667 |
0 |
|
FAIR Data, Workflows, and Research |
Best practices for workflows in GitHub repositories |
T00339 |
gxy.io/GTN:T00339 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-galaxy-best-practices/tutorial.html |
|
|
2023-05-11 |
2025-04-08 |
6 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
547 |
618 |
12.783333 |
0 |
|
FAIR Data, Workflows, and Research |
FAIR Bioimage Metadata |
T00362 |
gxy.io/GTN:T00362 |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-metadata/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
492 |
566 |
12.066667 |
0 |
|
FAIR Data, Workflows, and Research |
Submitting workflows to LifeMonitor |
T00342 |
gxy.io/GTN:T00342 |
https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-submitting-life-monitor/tutorial.html |
|
|
2023-05-11 |
2024-09-26 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
148 |
166 |
9.716667 |
0 |
|
FAIR Data, Workflows, and Research |
Access |
T00430 |
gxy.io/GTN:T00430 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-access/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
203 |
216 |
20.333333 |
0 |
|
FAIR Data, Workflows, and Research |
Persistent Identifiers |
T00434 |
gxy.io/GTN:T00434 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-persistent-identifiers/tutorial.html |
|
|
2024-03-26 |
2024-03-27 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
427 |
501 |
8.500000 |
0 |
|
FAIR Data, Workflows, and Research |
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data |
T00361 |
gxy.io/GTN:T00361 |
https://training.galaxyproject.org//topics/fair/tutorials/bioimage-REMBI/tutorial.html |
|
|
2023-09-13 |
2025-11-27 |
9 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
543 |
611 |
11.766667 |
0 |
|
FAIR Data, Workflows, and Research |
FAIRification of an RNAseq dataset |
T00435 |
gxy.io/GTN:T00435 |
https://training.galaxyproject.org//topics/fair/tutorials/fair-rna/tutorial.html |
|
|
2024-03-27 |
2026-05-28 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
447 |
531 |
11.533333 |
0 |
|
FAIR Data, Workflows, and Research |
An earth-system RO-Crate |
S00127 |
gxy.io/GTN:S00127 |
https://training.galaxyproject.org//topics/fair/tutorials/earth_system_rocrate/slides.html |
|
|
2024-12-02 |
2024-12-02 |
1 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2106587 |
3779053 |
1.466667 |
0 |
|
FAIR Data, Workflows, and Research |
Integrating InvenioRDM-compatible Repositories with Galaxy |
T00564 |
gxy.io/GTN:T00564 |
https://training.galaxyproject.org//topics/fair/tutorials/inveniordm-integration/tutorial.html |
|
|
2025-11-06 |
2025-11-06 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
147 |
154 |
18.433333 |
0 |
|
FAIR Data, Workflows, and Research |
Uploading Data to Zenodo from Galaxy |
T00565 |
gxy.io/GTN:T00565 |
https://training.galaxyproject.org//topics/fair/tutorials/zenodo-in-galaxy/tutorial.html |
|
|
2025-11-06 |
2025-11-06 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
200 |
211 |
25.166667 |
0 |
|
Using Galaxy and Managing your Data |
Workflow Reports |
T00165 |
gxy.io/GTN:T00165 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-reports/tutorial.html |
|
Visualisation |
2022-06-02 |
2024-06-14 |
9 |
True |
False |
True |
True |
Cut1, Grouping1, Remove beginning1, csv_to_tabular, tp_sorted_uniq, ggplot2_point, datamash_ops, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland, Galaxy Canada |
0 |
|
1084 |
1436 |
11.250000 |
0 |
|
Using Galaxy and Managing your Data |
Creating, Editing and Importing Galaxy Workflows |
T00163 |
gxy.io/GTN:T00163 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-editor/tutorial.html |
|
|
2020-07-17 |
2023-11-09 |
12 |
True |
False |
False |
True |
tp_tac, Paste1, Show beginning1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
6743 |
8312 |
7.616667 |
0 |
|
Using Galaxy and Managing your Data |
InterMine integration with Galaxy |
T00152 |
gxy.io/GTN:T00152 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/intermine/tutorial.html |
|
|
2020-12-09 |
2026-09-23 |
10 |
True |
False |
False |
True |
galaxy_intermine_exchange, intermine |
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
298 |
364 |
25.416667 |
0 |
|
Using Galaxy and Managing your Data |
Using Workflow Parameters |
T00164 |
gxy.io/GTN:T00164 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-parameters/tutorial.html |
|
|
2019-06-27 |
2024-06-14 |
15 |
True |
False |
True |
True |
tp_head_tool |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
2245 |
2819 |
10.400000 |
0 |
|
Using Galaxy and Managing your Data |
Galaxy workflows in Dockstore |
S00061 |
gxy.io/GTN:S00061 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-on-dockstore/slides.html |
|
|
2022-01-14 |
2022-10-27 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3789619 |
8091467 |
1.916667 |
0 |
|
Using Galaxy and Managing your Data |
Getting data into Galaxy |
S00062 |
gxy.io/GTN:S00062 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/get-data/slides.html |
|
|
2017-05-24 |
2022-10-18 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346006 |
9927447 |
2.016667 |
0 |
|
Using Galaxy and Managing your Data |
Annotate, prepare tests and publish Galaxy workflows in workflow registries |
T00533 |
gxy.io/GTN:T00533 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-fairification/tutorial.html |
|
Sequencing quality control, Validation, Read mapping, Visualisation |
2025-05-26 |
2025-05-26 |
1 |
True |
False |
False |
False |
multiqc, falco |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Switzerland |
0 |
|
566 |
649 |
7.850000 |
0 |
|
Using Galaxy and Managing your Data |
Downloading and Deleting Data in Galaxy |
T00147 |
gxy.io/GTN:T00147 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/download-delete-data/tutorial.html |
|
|
2019-10-17 |
2026-01-23 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
8286 |
10823 |
4.416667 |
0 |
|
Using Galaxy and Managing your Data |
Group tags for complex experimental designs |
T00149 |
gxy.io/GTN:T00149 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/group-tags/tutorial.html |
|
|
2019-03-06 |
2023-11-09 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3005 |
3994 |
11.116667 |
0 |
|
Using Galaxy and Managing your Data |
Creating high resolution images of Galaxy Workflows |
T00405 |
gxy.io/GTN:T00405 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-posters/tutorial.html |
|
|
2024-02-05 |
2025-04-08 |
3 |
True |
False |
False |
False |
graphicsmagick_image_convert |
Galaxy Europe |
Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
441 |
524 |
23.916667 |
0 |
|
Using Galaxy and Managing your Data |
Name tags for following complex histories |
T00154 |
gxy.io/GTN:T00154 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/name-tags/tutorial.html |
|
|
2019-04-08 |
2023-11-09 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
1941 |
2532 |
12.916667 |
0 |
|
Using Galaxy and Managing your Data |
Using dataset collections |
T00146 |
gxy.io/GTN:T00146 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/collections/tutorial.html |
|
Read mapping, Sequence alignment, Generation, Genome indexing |
2016-09-30 |
2026-09-23 |
21 |
True |
False |
True |
False |
snpSift_extractFields, lofreq_call, bwa_mem, collapse_dataset |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
17839 |
24110 |
8.650000 |
0 |
|
Using Galaxy and Managing your Data |
Accessing IIIF from within Galaxy |
T00584 |
gxy.io/GTN:T00584 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/iiif/tutorial.html |
|
|
2026-07-14 |
2026-08-13 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
42 |
43 |
4.783333 |
0 |
|
Using Galaxy and Managing your Data |
Rule Based Uploader |
T00160 |
gxy.io/GTN:T00160 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules/tutorial.html |
|
|
2020-07-04 |
2026-09-23 |
12 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
6351 |
8087 |
9.850000 |
0 |
|
Using Galaxy and Managing your Data |
Importing (uploading) data from Onedata |
T00493 |
gxy.io/GTN:T00493 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-import/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
491 |
607 |
15.933333 |
0 |
|
Using Galaxy and Managing your Data |
Searching Your History |
T00158 |
gxy.io/GTN:T00158 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/search/tutorial.html |
|
|
2020-07-15 |
2023-11-16 |
4 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
527 |
751 |
22.300000 |
0 |
|
Using Galaxy and Managing your Data |
JupyterLab in Galaxy |
T00153 |
gxy.io/GTN:T00153 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/jupyterlab/tutorial.html |
|
|
2020-03-05 |
2025-04-25 |
9 |
True |
False |
False |
False |
interactive_tool_jupyter_notebook |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
|
0 |
|
2377 |
3697 |
9.983333 |
0 |
|
Using Galaxy and Managing your Data |
Understanding Galaxy history system |
T00150 |
gxy.io/GTN:T00150 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history/tutorial.html |
|
|
2017-02-20 |
2026-07-23 |
13 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
6203 |
7872 |
10.016667 |
0 |
|
Using Galaxy and Managing your Data |
Use Jupyter notebooks in Galaxy |
T00148 |
gxy.io/GTN:T00148 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-intro-jupyter/tutorial.html |
|
|
2018-07-02 |
2026-09-23 |
12 |
True |
False |
True |
False |
interactive_tool_jupyter_notebook |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
|
0 |
|
3145 |
4108 |
8.383333 |
0 |
|
Using Galaxy and Managing your Data |
Rule Based Uploader: Advanced |
T00161 |
gxy.io/GTN:T00161 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules-advanced/tutorial.html |
|
|
2018-05-25 |
2024-06-14 |
11 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
989 |
1292 |
16.416667 |
0 |
|
Using Galaxy and Managing your Data |
Getting started with Onedata distributed storage |
T00491 |
gxy.io/GTN:T00491 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-getting-started/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
383 |
496 |
11.683333 |
0 |
|
Using Galaxy and Managing your Data |
Extracting Workflows from Histories |
T00151 |
gxy.io/GTN:T00151 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history-to-workflow/tutorial.html |
|
|
2017-10-18 |
2026-07-23 |
9 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3370 |
4307 |
10.983333 |
0 |
|
Using Galaxy and Managing your Data |
RStudio in Galaxy |
T00157 |
gxy.io/GTN:T00157 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/rstudio/tutorial.html |
|
|
2019-10-08 |
2026-02-25 |
16 |
True |
False |
False |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
5824 |
8948 |
8.183333 |
0 |
|
Using Galaxy and Managing your Data |
Onedata user-owned storage |
T00490 |
gxy.io/GTN:T00490 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-byos/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
3 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
237 |
271 |
16.566667 |
0 |
|
Using Galaxy and Managing your Data |
Exporting to Onedata remote |
T00492 |
gxy.io/GTN:T00492 |
https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-export/tutorial.html |
|
|
2025-03-24 |
2025-04-08 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
171 |
183 |
16.000000 |
0 |
|
Genome Annotation |
Masking repeats with RepeatMasker |
T00178 |
gxy.io/GTN:T00178 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/repeatmasker/tutorial.html |
Sequence composition, complexity and repeats, Genomics |
Repeat sequence detection, Mapping, RNA-Seq analysis, Genome annotation, Editing |
2021-11-29 |
2026-09-23 |
23 |
True |
False |
True |
True |
repeatmodeler, red, repeatmasker_wrapper, bedtools_maskfastabed |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada |
|
0 |
|
11711 |
14749 |
4.316667 |
0 |
|
Genome Annotation |
Introduction to Genome Annotation |
S00069 |
gxy.io/GTN:S00069 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/introduction/slides.html |
|
|
2019-05-13 |
2025-04-23 |
5 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346006 |
9927450 |
2.016667 |
0 |
|
Genome Annotation |
Comparative gene analysis in unannotated genomes |
T00174 |
gxy.io/GTN:T00174 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/gene-centric/tutorial.html |
Genomics, Gene and protein families, Sequence analysis, Phylogeny, Comparative genomics |
Multiple sequence alignment, Transcriptome assembly, Coding region prediction, Phylogenetic tree generation, Sequence alignment analysis, Database search, De-novo assembly |
2022-09-08 |
2026-09-23 |
11 |
True |
False |
False |
True |
Cut1, collapse_dataset, bg_diamond_makedb, Add_a_column1, gops_intersect_1, cat1, bg_diamond_view, tp_split_on_column, regexColumn1, join1, tab2fasta, orfipy, bg_diamond, rapidnj, Filter1, rbc_mafft |
Galaxy Europe, Galaxy Main (US) |
Galaxy Canada |
0 |
|
2236 |
3025 |
10.083333 |
0 |
|
Genome Annotation |
Genome annotation with Funannotate |
T00172 |
gxy.io/GTN:T00172 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/funannotate/tutorial.html |
Gene and protein families |
Information extraction, Genome visualisation, Sequence assembly validation, Sequence annotation, Query and retrieval, Genome annotation, Formatting, Protein feature detection, Homology-based gene prediction, Sequence alignment, Sequence motif recognition, Fold recognition |
2021-11-29 |
2026-09-23 |
27 |
True |
False |
True |
True |
interproscan, funannotate_compare, jbrowse, busco, funannotate_predict, aegean_parseval, funannotate_annotate, rna_star, eggnog_mapper, picard_MergeSamFiles |
Galaxy Europe, Galaxy Main (US), Galaxy France |
Galaxy Australia, Galaxy Canada, Galaxy Belgium |
0 |
|
12655 |
17528 |
5.583333 |
0 |
|
Genome Annotation |
Genome annotation with Maker (short) |
T00167 |
gxy.io/GTN:T00167 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker-short/tutorial.html |
|
Genome visualisation, Sequence assembly validation, Sequence annotation, Genome annotation |
2021-01-12 |
2026-09-23 |
4 |
True |
False |
False |
True |
maker_map_ids, jbrowse, busco, fasta-stats, gffread, maker, jcvi_gff_stats |
|
Galaxy Belgium |
0 |
|
4488 |
6190 |
9.433333 |
0 |
|
Genome Annotation |
Essential genes detection with Transposon insertion sequencing |
T00179 |
gxy.io/GTN:T00179 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/tnseq/tutorial.html |
Genomics, Microbiology, Sequence analysis, Mobile genetic elements |
Primer removal, Read pre-processing, Sequence trimming, Transposon prediction |
2019-07-02 |
2026-09-23 |
13 |
True |
True |
False |
True |
Cut1, cutadapt, transit_gumbel, Add_a_column1, tp_easyjoin_tool, tp_sort_header_tool, __EXTRACT_DATASET__, bg_find_subsequences, gff_to_prot, bowtie_wrapper, deeptools_bam_coverage, Filter1 |
Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy Europe, Galaxy Canada |
0 |
|
4355199 |
9943377 |
5.766667 |
0 |
|
Genome Annotation |
Genome annotation with Maker |
T00166 |
gxy.io/GTN:T00166 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker/tutorial.html |
|
Genome visualisation, Sequence assembly validation, Sequence annotation, Gene prediction, Operation, Genome annotation, Ab-initio gene prediction, Homology-based gene prediction |
2018-09-24 |
2026-09-23 |
15 |
True |
False |
False |
True |
snap_training, maker_map_ids, jbrowse, busco, fasta-stats, gffread, maker, jcvi_gff_stats, augustus_training |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy Canada |
0 |
|
14610 |
25376 |
4.450000 |
0 |
|
Genome Annotation |
Functional annotation of protein sequences |
T00173 |
gxy.io/GTN:T00173 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/functional/tutorial.html |
Function analysis, Protein sites, features and motifs |
Information extraction, Query and retrieval, Genome annotation, Homology-based gene prediction, Protein feature detection, Sequence motif recognition, Sequence alignment analysis, Fold recognition |
2022-07-20 |
2026-09-23 |
13 |
True |
False |
False |
True |
bg_diamond, interproscan, ncbi_blastp_wrapper, eggnog_mapper |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
5425 |
7074 |
6.166667 |
0 |
|
Genome Annotation |
Refining Genome Annotations with Apollo (eukaryotes) |
T00170 |
gxy.io/GTN:T00170 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo-euk/tutorial.html |
Genomics |
Genome visualisation |
2022-08-22 |
2026-09-23 |
17 |
True |
False |
False |
False |
jbrowse, create_or_update, iframe |
Galaxy Norway |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
0 |
|
1874 |
2682 |
10.966667 |
0 |
|
Genome Annotation |
Long non-coding RNAs (lncRNAs) annotation with FEELnc |
T00177 |
gxy.io/GTN:T00177 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/lncrna/tutorial.html |
|
RNA-Seq analysis, Transcriptome assembly, Classification, Sequence annotation, Annotation |
2022-09-23 |
2026-09-23 |
12 |
True |
False |
True |
True |
Extract_features1, gffread, stringtie, feelnc, tp_cat |
|
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
2408 |
3155 |
9.800000 |
0 |
|
Genome Annotation |
CRISPR screen analysis |
T00171 |
gxy.io/GTN:T00171 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/crispr-screen/tutorial.html |
|
Primer removal, Sequencing quality control, Validation, Statistical calculation, Genetic variation analysis, Read pre-processing, Sequence trimming, Sequence composition calculation |
2021-10-15 |
2026-09-23 |
13 |
True |
True |
True |
True |
cutadapt, mageck_mle, tp_awk_tool, volcanoplot, multiqc, mageck_count, mageck_test, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
3948164 |
8566788 |
4.666667 |
0 |
|
Genome Annotation |
Genome annotation with Prokka |
T00168 |
gxy.io/GTN:T00168 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis |
Gene prediction, Coding region prediction, Genome annotation, Genome visualisation |
2018-03-06 |
2026-09-23 |
28 |
True |
True |
True |
True |
jbrowse, prokka |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
4366262 |
9961006 |
7.116667 |
0 |
|
Genome Annotation |
Secondary metabolite discovery |
T00420 |
gxy.io/GTN:T00420 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/secondary-metabolite-discovery/tutorial.html |
|
Differential gene expression analysis, Sequence clustering, Data handling, Service invocation, Gene prediction |
2024-02-21 |
2026-09-23 |
3 |
True |
False |
False |
True |
ctb_chemfp_mol2fps, edu.tamu.cpt.gff3.customGbkToGff, collapse_dataset, openbabel_remDuplicates, Remove beginning1, bp_genbank2gff3, ctb_np-likeness-calculator, interactive_tool_jupyter_notebook, tp_awk_tool, ctb_simsearch, antismash, ctb_silicos_qed, ncbi_acc_download |
Galaxy Europe |
|
0 |
|
1058 |
1298 |
3.883333 |
0 |
|
Genome Annotation |
Bacterial Genome Annotation |
T00403 |
gxy.io/GTN:T00403 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-annotation/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis, Whole genome sequencing, Functional genomics, Mobile genetic elements |
Genome visualisation, Nucleic acid feature detection, Genome annotation, Scaffolding, Genome assembly, Multilocus sequence typing, Protein feature detection, Sequence motif recognition, Structural variation detection |
2024-02-01 |
2026-09-23 |
7 |
True |
False |
True |
True |
Grouping1, jbrowse, plasmidfinder, isescan, integron_finder, bakta, tp_tail_tool, upload1, tp_replace_in_column, tbl2gff3 |
Galaxy Europe, Galaxy France |
Galaxy Main (US), Galaxy Canada, Galaxy Belgium |
0 |
|
9471 |
12899 |
8.000000 |
0 |
|
Genome Annotation |
Refining Genome Annotations with Apollo (prokaryotes) |
T00169 |
gxy.io/GTN:T00169 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo/tutorial.html |
Genomics, Microbiology, Gene and protein families, Sequence analysis |
Genome visualisation |
2021-06-04 |
2026-09-23 |
23 |
True |
True |
True |
True |
create_or_update, create_account, jbrowse, iframe, list_organism |
|
Galaxy Europe, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4112763 |
9151612 |
13.400000 |
0 |
|
Genome Annotation |
Comparison of two annotation tools - Helixer and Braker3 |
T00539 |
gxy.io/GTN:T00539 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/comparison-braker-helixer-annotation/tutorial.html |
Sequence assembly, Genomics |
Differential protein expression profiling, Genome visualisation, Sequence assembly validation, Sequence annotation, Gene prediction, Genome annotation, Sequence alignment |
2025-06-20 |
2026-09-23 |
3 |
True |
False |
False |
True |
jbrowse, busco, gffread, helixer, omark, rna_star, braker3 |
|
|
0 |
|
1025 |
1168 |
7.466667 |
0 |
|
Genome Annotation |
Identification of AMR genes in an assembled bacterial genome |
T00401 |
gxy.io/GTN:T00401 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/amr-gene-detection/tutorial.html |
Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Sequence analysis, Infectious disease, Antimicrobial resistance |
Antimicrobial resistance prediction, Read mapping, Genome annotation, Genome visualisation |
2024-01-23 |
2026-09-23 |
12 |
True |
False |
True |
True |
staramr_search, jbrowse, bowtie2, bakta, Grep1, upload1, tbl2gff3 |
Galaxy Europe, Galaxy France, Galaxy Belgium |
Galaxy Main (US), Galaxy Canada |
0 |
|
5026 |
6781 |
9.066667 |
0 |
|
Genome Annotation |
Genome annotation with Braker3 |
T00497 |
gxy.io/GTN:T00497 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/braker3/tutorial.html |
Sequence assembly, Genomics, Biodiversity, Zoology, Plant biology |
Sequence alignment, Genome visualisation, Sequence assembly validation, Differential protein expression profiling, Sequence annotation, Genome annotation, Gene prediction |
2025-03-17 |
2026-09-23 |
6 |
True |
False |
False |
True |
jbrowse, busco, fasta-stats, gffread, omark, rna_star, braker3 |
|
|
0 |
|
2657 |
3171 |
4.716667 |
0 |
|
Genome Annotation |
Genome annotation with Helixer |
T00451 |
gxy.io/GTN:T00451 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/helixer/tutorial.html |
Biodiversity, Genomics, Zoology, Plant biology |
Genome visualisation, Sequence assembly validation, Differential protein expression profiling, Sequence annotation, Genome annotation, Gene prediction |
2024-08-21 |
2026-09-23 |
9 |
True |
False |
False |
True |
jbrowse, busco, gffread, helixer, omark, jcvi_gff_stats |
|
|
0 |
|
1893 |
2222 |
6.766667 |
0 |
|
Genome Annotation |
From small to large-scale genome comparison |
T00176 |
gxy.io/GTN:T00176 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/hpc-for-lsgc/tutorial.html |
|
Multiple sequence alignment |
2021-02-08 |
2026-09-23 |
9 |
True |
True |
False |
True |
clustalw, gecko, chromeister, tp_awk_tool |
Galaxy Europe, Galaxy Australia |
Galaxy Canada, Galaxy Belgium |
0 |
|
4302100 |
9767797 |
10.233333 |
0 |
|
Genome Annotation |
Creating an Official Gene Set |
T00370 |
gxy.io/GTN:T00370 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/official-gene-set/tutorial.html |
|
|
2023-11-02 |
2024-02-29 |
2 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
83 |
89 |
14.716667 |
0 |
|
Genome Annotation |
Bacterial pangenomics |
T00496 |
gxy.io/GTN:T00496 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-pangenomics/tutorial.html |
Genomics, Microbiology |
Genome annotation, Sequence assembly, Essential dynamics, Rarefaction |
2025-03-14 |
2026-09-23 |
2 |
True |
False |
False |
False |
ppanggolin_all, upload1, ppanggolin_msa |
Galaxy Europe, Galaxy France |
Galaxy Canada |
0 |
|
233 |
263 |
15.950000 |
0 |
|
Genome Annotation |
Genome Annotation |
T00175 |
gxy.io/GTN:T00175 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/genome-annotation/tutorial.html |
|
|
2015-06-29 |
2026-09-23 |
20 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
35590 |
64498 |
2.116667 |
0 |
|
Genome Annotation |
Bacterial genome quality control |
T00495 |
gxy.io/GTN:T00495 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-quality-control/tutorial.html |
Genomics, Microbiology |
Sequencing quality control, Validation, Statistical calculation, Sequence assembly validation, Genome comparison, Sequence composition calculation |
2025-03-14 |
2026-09-03 |
3 |
True |
False |
False |
False |
upload1, drep_dereplicate, checkm2 |
Galaxy Europe, Galaxy Main (US), Galaxy France |
Galaxy Switzerland, Galaxy Canada |
0 |
|
269 |
310 |
20.833333 |
0 |
|
Genome Annotation |
Pangenome analysis with Roary |
T00586 |
gxy.io/GTN:T00586 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.html |
Genomics |
Genome assembly, Genome annotation, Gene prediction, Coding region prediction, Sequence analysis, Phylogenetic analysis |
2026-07-21 |
2026-09-23 |
3 |
True |
False |
False |
False |
roary, iqtree, upload1, prokka |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
296 |
356 |
3.800000 |
0 |
|
Genome Annotation |
Dataset construction for bacterial comparative genomics |
T00494 |
gxy.io/GTN:T00494 |
https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-comparative-genomics-dataset-construction/tutorial.html |
Genomics, Microbiology |
Data retrieval, Data handling, Sequence database search |
2025-03-14 |
2026-09-23 |
3 |
True |
False |
False |
False |
Cut1, datasets_download_genome, Remove beginning1, cat1, bg_uniq, sort1, upload1 |
Galaxy France |
|
0 |
|
177 |
196 |
34.950000 |
0 |
|
Variant Analysis |
Microbial Variant Calling |
T00313 |
gxy.io/GTN:T00313 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/microbial-variants/tutorial.html |
Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation |
Genome visualisation, Phylogenetic tree generation, Variant calling, Phylogenetic tree visualisation |
2018-02-26 |
2026-09-23 |
26 |
True |
False |
False |
True |
snippy, jbrowse |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
16827 |
26381 |
5.033333 |
0 |
|
Visualisation |
Genomic Data Visualisation with JBrowse |
T00322 |
gxy.io/GTN:T00322 |
https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse/tutorial.html |
|
Genome visualisation |
2020-01-10 |
2026-09-23 |
18 |
True |
True |
False |
False |
jbrowse |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland, Galaxy Canada |
0 |
|
4351742 |
9934909 |
10.700000 |
0 |
|
Visualisation |
Genomic Data Visualisation with JBrowse2 |
T00578 |
gxy.io/GTN:T00578 |
https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse2/tutorial.html |
|
Structure visualisation, Pathway visualisation, Genome visualisation |
2026-04-29 |
2026-09-23 |
2 |
True |
False |
False |
False |
jbrowse2 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Australia |
0 |
|
375 |
389 |
3.583333 |
0 |
|
Imaging |
Object tracking using CellProfiler |
T00182 |
gxy.io/GTN:T00182 |
https://training.galaxyproject.org//topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html |
|
Quantification, Image analysis, Parsing |
2021-03-17 |
2026-09-23 |
13 |
True |
False |
False |
True |
cp_tile, unzip, cp_measure_object_size_shape, cp_save_images, cp_track_objects, cp_cellprofiler, cp_overlay_outlines, cp_export_to_spreadsheet, cp_color_to_gray, cp_measure_object_intensity, cp_common, cp_identify_primary_objects |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy Canada |
0 |
|
2442 |
2989 |
5.550000 |
0 |
|
Imaging |
Voronoi segmentation |
T00534 |
gxy.io/GTN:T00534 |
https://training.galaxyproject.org//topics/imaging/tutorials/voronoi-segmentation/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2025-05-13 |
2026-09-23 |
9 |
True |
False |
False |
True |
unzip, ip_binary_to_labelimage, ip_convertimage, ip_threshold, image_math, colorize_labels, ip_overlay_images, ip_imageinfo, ip_count_objects, repeat_channels, voronoi_tessellation, ip_filter_standard, ip_2d_feature_extraction |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
Galaxy Main (US) |
0 |
|
640 |
832 |
6.683333 |
0 |
|
Imaging |
Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy |
T00499 |
gxy.io/GTN:T00499 |
https://training.galaxyproject.org//topics/imaging/tutorials/omero-suite/tutorial.html |
|
Image analysis |
2024-12-04 |
2026-09-23 |
10 |
True |
False |
False |
True |
omero_filter, omero_get_id, omero_metadata_import, omero_get_value, omero_roi_import, Convert characters1, param_value_from_file, omero_import, split_file_to_collection, tp_replace_in_line |
Galaxy Europe |
Galaxy Main (US), Galaxy Canada |
0 |
|
418 |
536 |
13.633333 |
0 |
|
Imaging |
Analyse HeLa fluorescence siRNA screen |
T00180 |
gxy.io/GTN:T00180 |
https://training.galaxyproject.org//topics/imaging/tutorials/hela-screen-analysis/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2019-08-13 |
2026-09-23 |
18 |
True |
False |
False |
True |
collapse_dataset, ip_2d_filter_segmentation_by_features, unzip, ip_binary_to_labelimage, ip_threshold, ip_filter_standard, ip_2d_feature_extraction |
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy Main (US), Galaxy Norway |
0 |
|
961 |
1247 |
16.833333 |
0 |
|
Imaging |
Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines |
T00498 |
gxy.io/GTN:T00498 |
https://training.galaxyproject.org//topics/imaging/tutorials/2D-spot-detection/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2025-03-20 |
2025-11-26 |
5 |
True |
False |
False |
True |
unzip, ip_binary_to_labelimage, __EXTRACT_DATASET__, idr_download_by_ids, ip_overlay_images, ip_points_to_label, ip_spot_detection_2d, ip_histogram_equalization |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Canada |
0 |
|
349 |
408 |
10.466667 |
0 |
|
Imaging |
Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy |
T00532 |
gxy.io/GTN:T00532 |
https://training.galaxyproject.org//topics/imaging/tutorials/parameter-tuning/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2025-04-28 |
2026-01-21 |
4 |
True |
False |
False |
True |
ip_segmetrics, collapse_dataset, tp_split_on_column, ip_threshold, ip_histogram_equalization, param_value_from_file, ip_filter_standard |
Galaxy Canada, Galaxy Belgium |
Galaxy Europe, Galaxy Main (US) |
0 |
|
214 |
229 |
18.866667 |
0 |
|
Imaging |
Using BioImage.IO models for image analysis in Galaxy |
T00500 |
gxy.io/GTN:T00500 |
https://training.galaxyproject.org//topics/imaging/tutorials/process-image-bioimageio/tutorial.html |
|
Image analysis |
2025-04-09 |
2026-09-03 |
11 |
True |
False |
False |
True |
ip_split_image, ip_binary_to_labelimage, ip_threshold, image_math, __EXTRACT_DATASET__, ip_overlay_images, bioimage_inference |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
|
0 |
|
389 |
440 |
10.716667 |
0 |
|
Imaging |
Nucleoli segmentation and feature extraction using CellProfiler |
T00183 |
gxy.io/GTN:T00183 |
https://training.galaxyproject.org//topics/imaging/tutorials/tutorial-CP/tutorial.html |
|
Quantification, Image analysis, Parsing |
2020-07-01 |
2025-11-26 |
12 |
True |
True |
False |
True |
cp_measure_object_size_shape, cp_display_data_on_image, cp_convert_objects_to_image, idr_download_by_ids, cp_cellprofiler, cp_enhance_or_suppress_features, cp_export_to_spreadsheet, cp_gray_to_color, cp_measure_granularity, cp_relate_objects, cp_measure_object_intensity, cp_common, cp_measure_image_area_occupied, cp_measure_texture, cp_save_images, cp_measure_image_intensity, cp_measure_image_quality, cp_image_math, cp_mask_image, cp_identify_primary_objects |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
4350360 |
9933639 |
5.966667 |
0 |
|
Imaging |
Where to start with bioimage analysis in Galaxy |
T00573 |
gxy.io/GTN:T00573 |
https://training.galaxyproject.org//topics/imaging/tutorials/where-to-start-bioimaging-galaxy/tutorial.html |
|
Quantification, Image analysis, Parsing, Image annotation, Visualisation, Data handling, Formatting |
2026-02-17 |
2026-08-24 |
5 |
True |
False |
False |
False |
interactive_tool_cellprofiler, idr_download_by_ids, ip_color_deconvolution, interactive_tool_ilastik, cp_overlay_outlines, ip_convertimage, cellposesam, ip_imageinfo, ip_histogram_equalization, bioimage_inference, interactive_tool_qupath, ip_split_image, libcarna_render, interactive_tool_cellpose, bf2raw, cellpose, ip_threshold, ip_overlay_images, ip_filter_standard |
|
|
0 |
|
414 |
479 |
6.666667 |
0 |
|
Imaging |
End-to-End Tissue Microarray Image Analysis with Galaxy-ME |
T00334 |
gxy.io/GTN:T00334 |
https://training.galaxyproject.org//topics/imaging/tutorials/multiplex-tissue-imaging-TMA/tutorial.html |
|
|
2023-02-14 |
2026-09-23 |
10 |
True |
False |
False |
True |
quantification, mesmer, scimap_phenotyping, vitessce_spatial, scanpy_compute_graph, ip_convertimage, basic_illumination, squidpy_spatial, unet_coreograph, scimap_mcmicro_to_anndata, palom, ashlar, rename_tiff_channels, gate_finder, celesta |
|
|
0 |
|
1845 |
2419 |
4.650000 |
0 |
|
Imaging |
Content Tracking and Verification in Galaxy Workflows with ISCC-SUM |
T00572 |
gxy.io/GTN:T00572 |
https://training.galaxyproject.org//topics/imaging/tutorials/iscc-suite/tutorial.html |
|
Image analysis |
2026-02-14 |
2026-09-23 |
3 |
True |
False |
False |
True |
ip_split_image, iscc_sum_verify, iscc_sum, __EXTRACT_DATASET__, ip_threshold, param_value_from_file, iscc_sum_similarity |
Galaxy Europe, Galaxy Main (US) |
Galaxy Canada |
0 |
|
91 |
91 |
46.933333 |
0 |
|
Imaging |
Training Custom YOLO Models for Segmentation of Bioimages |
T00550 |
gxy.io/GTN:T00550 |
https://training.galaxyproject.org//topics/imaging/tutorials/yolo-segmentation-training/tutorial.html |
|
Visualisation, Data handling, Image analysis, Image annotation |
2025-07-25 |
2026-09-23 |
8 |
True |
False |
False |
True |
json2yolosegment, graphicsmagick_image_convert, unzip, yolo_training, interactive_tool_anylabeling, ip_histogram_equalization |
Galaxy Europe |
|
0 |
|
575 |
653 |
2.766667 |
0 |
|
Imaging |
Tracking of mitochondria and capturing mitoflashes |
T00472 |
gxy.io/GTN:T00472 |
https://training.galaxyproject.org//topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html |
|
Image analysis |
2024-11-20 |
2026-09-23 |
6 |
True |
False |
False |
True |
ip_points_association_nn, ip_spot_detection_2d, ip_curve_fitting |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium |
Galaxy Canada |
0 |
|
341 |
390 |
7.116667 |
0 |
|
Imaging |
Execute a BiaPy workflow in Galaxy |
T00571 |
gxy.io/GTN:T00571 |
https://training.galaxyproject.org//topics/imaging/tutorials/biapy/tutorial.html |
|
Image analysis |
2026-02-11 |
2026-09-23 |
3 |
True |
False |
False |
True |
libcarna_render, ip_binary_to_labelimage, ip_convertimage, __EXTRACT_DATASET__, biapy, ip_overlay_images |
Galaxy Europe |
Galaxy Canada |
0 |
|
115 |
124 |
12.950000 |
0 |
|
Imaging |
Segmentation of Anatomical Structures in Medical 3-D Images |
T00574 |
gxy.io/GTN:T00574 |
https://training.galaxyproject.org//topics/imaging/tutorials/dicom-anatomical-3d/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2026-02-26 |
2026-09-23 |
2 |
True |
False |
False |
True |
ip_binary_to_labelimage, ridge_filter_skimage, highdicom_dicom2tiff, param_value_from_file, query_tabular, unzip, Convert characters1, ip_2d_feature_extraction, ip_2d_filter_segmentation_by_features, libcarna_render, compose_text_param, add_line_to_file, Add_a_column1, tp_text_file_with_recurring_lines, tp_sort_header_tool, ip_threshold, ip_scale_image, clip_image, ip_concat_channels, tp_replace_in_line |
Galaxy Europe |
Galaxy Main (US) |
0 |
|
246 |
269 |
14.666667 |
0 |
|
Imaging |
Quantitative Analysis of Histological Staining Using Color Deconvolution |
T00581 |
gxy.io/GTN:T00581 |
https://training.galaxyproject.org//topics/imaging/tutorials/stain-quantification-color-deconvolution/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2026-06-15 |
2026-09-23 |
3 |
True |
False |
False |
True |
tp_sed_tool, __EXTRACT_DATASET__, ip_color_deconvolution, Cut1, Paste1, ip_imageinfo, Grep1, ip_histogram_equalization, ip_2d_feature_extraction, ip_split_image, collection_element_identifiers, cat1, imagej2_analyze_particles_binary, tp_cat, Show tail1, collapse_dataset, Add_a_column1, Show beginning1, tp_text_file_with_recurring_lines, ip_threshold |
|
|
0 |
|
218 |
247 |
15.200000 |
0 |
|
Imaging |
Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools |
T00549 |
gxy.io/GTN:T00549 |
https://training.galaxyproject.org//topics/imaging/tutorials/electrophoresis-gel-bands-image-analysis/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2025-08-11 |
2026-06-01 |
4 |
True |
False |
False |
True |
ip_split_image, __EXTRACT_DATASET__, ip_imageinfo, ip_points_to_label, graphicsmagick_image_convert, interactive_tool_qupath, ip_2d_feature_extraction |
Galaxy Europe |
|
0 |
|
640 |
732 |
3.716667 |
0 |
|
Imaging |
Introduction to Image Analysis using Galaxy |
T00181 |
gxy.io/GTN:T00181 |
https://training.galaxyproject.org//topics/imaging/tutorials/imaging-introduction/tutorial.html |
|
Image analysis, Image annotation, Visualisation, Data handling |
2019-08-13 |
2026-09-23 |
20 |
True |
False |
False |
True |
unzip, ip_binary_to_labelimage, ip_threshold, ip_overlay_images, ip_imageinfo, ip_histogram_equalization, ip_count_objects, ip_filter_standard |
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy Main (US), Galaxy Switzerland |
0 |
|
3134 |
4291 |
9.016667 |
0 |
|
Imaging |
AI pipeline for annotating marine species (Project Moorev - Marine) |
T00587 |
gxy.io/GTN:T00587 |
https://training.galaxyproject.org//topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.html |
|
|
2026-07-24 |
2026-09-23 |
4 |
True |
False |
False |
False |
sam3_semantic_segmentation, edit_coco_annotation, coco_annotation_visualizer |
Galaxy Europe |
|
0 |
|
68 |
77 |
30.633333 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Galaxy |
S00073 |
gxy.io/GTN:S00073 |
https://training.galaxyproject.org//topics/introduction/tutorials/introduction/slides.html |
|
|
2016-09-30 |
2025-09-23 |
6 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927634 |
2.016667 |
0 |
|
Introduction to Galaxy Analyses |
A short introduction to Galaxy |
T00190 |
gxy.io/GTN:T00190 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-short/tutorial.html |
|
Sequencing quality control, Statistical calculation, Sequence composition calculation |
2018-08-27 |
2026-09-23 |
45 |
True |
True |
True |
True |
cshl_fastq_quality_filter, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
4410814 |
10027427 |
11.983333 |
0 |
|
Introduction to Galaxy Analyses |
Galaxy Basics for genomics |
T00186 |
gxy.io/GTN:T00186 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101/tutorial.html |
|
Mapping |
2016-12-19 |
2026-09-23 |
70 |
True |
False |
True |
True |
comp1, tp_head_tool, tp_sort_header_tool, datamash_ops, bedtools_intersectbed, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland |
Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
58038 |
91639 |
8.483333 |
0 |
|
Introduction to Galaxy Analyses |
Galaxy Basics for everyone |
T00187 |
gxy.io/GTN:T00187 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101-everyone/tutorial.html |
|
Visualisation |
2019-11-14 |
2026-09-23 |
36 |
True |
False |
True |
True |
Cut1, Grouping1, Remove beginning1, csv_to_tabular, tp_sorted_uniq, ggplot2_point, datamash_ops, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland, Galaxy Canada |
0 |
|
29272 |
45573 |
9.966667 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Galaxy as an RDM platform |
T00575 |
gxy.io/GTN:T00575 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-rdm/tutorial.html |
|
Visualisation |
2026-03-19 |
2026-09-23 |
4 |
True |
False |
False |
True |
unzip, Add_a_column1, ggplot2_histogram, export_remote, column_remove_by_header, Summary_Statistics1, imagemagick_image_montage |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada |
0 |
|
568 |
686 |
9.966667 |
0 |
|
Introduction to Galaxy Analyses |
Very Short Introductions: QC |
T00436 |
gxy.io/GTN:T00436 |
https://training.galaxyproject.org//topics/introduction/tutorials/vsi_qc/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Validation |
2024-03-26 |
2026-09-23 |
5 |
True |
False |
False |
False |
fastp, multiqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
500 |
578 |
10.600000 |
0 |
|
Introduction to Galaxy Analyses |
From peaks to genes |
T00189 |
gxy.io/GTN:T00189 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html |
|
|
2016-03-29 |
2026-09-23 |
70 |
True |
False |
True |
True |
Cut1, Grouping1, Add_a_column1, gops_intersect_1, tp_sort_header_tool, CONVERTER_interval_to_bed_0, get_flanks1, tp_tail_tool, upload1, tp_replace_in_column |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
21654 |
35318 |
10.533333 |
0 |
|
Introduction to Galaxy Analyses |
NGS data logistics |
T00188 |
gxy.io/GTN:T00188 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-ngs-data-managment/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Validation, Generation, Read mapping, SNP detection, Data handling, Formatting, Sequence alignment, Genome indexing |
2017-02-22 |
2026-09-23 |
41 |
True |
False |
True |
True |
samtools_stats, samtools_view, snpEff, bwa_mem, picard_MarkDuplicates, lofreq_indelqual, snpeff_sars_cov_2, fasterq_dump, lofreq_viterbi, collapse_dataset, lofreq_call, snpEff_build_gb, fastp, bwa, multiqc, snpSift_extractFields, bwa_mem2, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland |
Galaxy Canada, Galaxy Belgium |
0 |
|
22230 |
37185 |
9.350000 |
0 |
|
Introduction to Galaxy Analyses |
Data Manipulation Olympics |
T00184 |
gxy.io/GTN:T00184 |
https://training.galaxyproject.org//topics/introduction/tutorials/data-manipulation-olympics/tutorial.html |
|
|
2022-07-20 |
2026-09-23 |
18 |
True |
False |
False |
True |
{{version_paste}}, tp_sorted_uniq, {{version_cut_columns}}, upload1, {{version_cut_advanced}}, Cut1, {{version_join}}, wc_gnu, {{version_filter}}, {{version_replace_text_column}}, tabular_to_csv, Remove beginning1, {{version_count}}, {{version_sort}}, {{version_compute}}, {{version_remove_beginning}}, {{version_replace_text_line}}, cat1, tp_split_on_column, {{version_datamash}}, {{version_wc}}, regexColumn1, join1, {{version_unique}}, tp_cat, datamash_ops, {{version_select_first}}, Count1, Grouping1, Add_a_column1, {{version_cat}}, Show beginning1, tp_sort_header_tool, {{version_remove_columns_by_header}}, {{version_split}}, Filter1 |
|
|
0 |
|
7232 |
10278 |
11.466667 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to Genomics and Galaxy |
T00191 |
gxy.io/GTN:T00191 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-strands/tutorial.html |
|
|
2017-10-18 |
2026-05-17 |
43 |
True |
False |
True |
True |
gene2exon1, gops_intersect_1, cat1, tp_sort_header_tool, tp_cat, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
21618 |
33608 |
9.683333 |
0 |
|
Introduction to Galaxy Analyses |
How to reproduce published Galaxy analyses |
T00192 |
gxy.io/GTN:T00192 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-reproduce/tutorial.html |
|
Visualisation |
2021-08-25 |
2026-09-23 |
14 |
True |
False |
False |
True |
Cut1, Grouping1, Remove beginning1, csv_to_tabular, tp_sorted_uniq, ggplot2_point, datamash_ops, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
2526 |
3311 |
17.000000 |
0 |
|
Introduction to Galaxy Analyses |
Options for using Galaxy |
S00075 |
gxy.io/GTN:S00075 |
https://training.galaxyproject.org//topics/introduction/tutorials/options-for-using-galaxy/slides.html |
|
|
2017-05-24 |
2022-09-23 |
14 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927634 |
2.016667 |
0 |
|
Introduction to Galaxy Analyses |
Best Practices for Citing Galaxy |
T00566 |
gxy.io/GTN:T00566 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-cite/tutorial.html |
|
|
2025-11-06 |
2026-08-28 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
451 |
483 |
9.850000 |
0 |
|
Introduction to Galaxy Analyses |
IGV Introduction |
T00193 |
gxy.io/GTN:T00193 |
https://training.galaxyproject.org//topics/introduction/tutorials/igv-introduction/tutorial.html |
|
|
2016-03-30 |
2023-02-17 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
8888 |
12304 |
5.283333 |
0 |
|
Introduction to Galaxy Analyses |
Introduction to the Dataverse Integration in Galaxy |
T00582 |
gxy.io/GTN:T00582 |
https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-dataverse/tutorial.html |
|
|
2026-06-25 |
2026-06-25 |
1 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
75 |
80 |
25.100000 |
0 |
|
Introduction to Galaxy Analyses |
Upload data to Galaxy |
T00185 |
gxy.io/GTN:T00185 |
https://training.galaxyproject.org//topics/introduction/tutorials/dummy/tutorial.html |
|
|
2022-09-23 |
2023-11-09 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
627 |
707 |
9.466667 |
0 |
|
Materials Science |
Finding the muon stopping site with pymuon-suite in Galaxy |
T00402 |
gxy.io/GTN:T00402 |
https://training.galaxyproject.org//topics/materials-science/tutorials/muon-stopping-sites-muairss-uep/tutorial.html |
|
|
2024-01-22 |
2026-09-23 |
3 |
True |
False |
True |
True |
pm_muairss_read, pm_uep_opt |
Galaxy Europe, Galaxy Canada |
Galaxy Belgium |
0 |
|
462 |
557 |
12.083333 |
0 |
|
Metabolomics |
Introduction to Metabolomics |
S00076 |
gxy.io/GTN:S00076 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/introduction/slides.html |
|
|
2018-11-20 |
2023-01-12 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927634 |
2.016667 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS analysis |
T00195 |
gxy.io/GTN:T00195 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms/tutorial.html |
Metabolomics |
Annotation, Spectral analysis, Visualisation, Data handling |
2019-07-02 |
2026-07-23 |
14 |
True |
False |
False |
True |
Batch_correction, abims_xcms_xcmsSet, quality_metrics, msnbase_readmsdata, xcms_merge, abims_xcms_retcor, xcms_plot_chromatogram, abims_xcms_group, abims_CAMERA_annotateDiffreport, generic_filter, wsdl_hmdb, abims_xcms_fillPeaks, Univariate, xcms_export_samplemetadata |
|
Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
14439 |
23054 |
3.650000 |
0 |
|
Metabolomics |
Mass spectrometry imaging: Examining the spatial distribution of analytes |
T00198 |
gxy.io/GTN:T00198 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-analyte-distribution/tutorial.html |
Metabolomics |
|
2019-02-21 |
2026-09-23 |
20 |
True |
False |
False |
True |
cardinal_filtering, cardinal_data_exporter, cardinal_spectra_plots, cardinal_mz_images, cardinal_quality_report, Filter1 |
Galaxy Europe |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
3550 |
4912 |
9.716667 |
0 |
|
Metabolomics |
Predicting EI+ mass spectra with QCxMS |
T00458 |
gxy.io/GTN:T00458 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/qcxms-predictions/tutorial.html |
Metabolomics |
|
2024-10-01 |
2026-07-23 |
2 |
True |
True |
False |
True |
xtb_molecular_optimization, __FILTER_FAILED_DATASETS__, openbabel_compound_convert, tp_cut_tool, qcxms_production_run, ctb_im_conformers, qcxms_getres, param_value_from_file, tp_cat, split_file_to_collection, qcxms_neutral_run |
Galaxy Europe |
Galaxy Australia, Galaxy Canada, Galaxy Belgium |
0 |
|
2208294 |
4039224 |
5.616667 |
0 |
|
Metabolomics |
Molecular formula assignment and mass recalibration with MFAssignR package |
T00535 |
gxy.io/GTN:T00535 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/mfassignr/tutorial.html |
Metabolomics |
Deisotoping, Visualisation, Annotation, Mass spectra calibration |
2025-05-19 |
2026-09-23 |
3 |
True |
False |
False |
True |
mfassignr_mfassignCHO, mfassignr_isofiltr, mfassignr_findRecalSeries, mfassignr_recallist, mfassignr_snplot, mfassignr_histnoise, mfassignr_kmdnoise, mfassignr_recal, mfassignr_mfassign |
|
|
0 |
|
428 |
492 |
10.350000 |
0 |
|
Metabolomics |
Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms) |
T00344 |
gxy.io/GTN:T00344 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/gc_ms_with_xcms/tutorial.html |
Metabolomics |
Format validation, Data handling, Formatting, Spectral library search, Clustering, Imputation, Correlation, Standardisation and normalisation, Visualisation, Filtering |
2023-05-08 |
2026-07-23 |
6 |
True |
False |
False |
True |
abims_xcms_xcmsSet, abims_xcms_retcor, msnbase_readmsdata, xcms_merge, ramclustr_define_experiment, abims_xcms_group, msconvert, matchms_similarity, matchms_formatter, matchms_filtering, ramclustr, abims_xcms_fillPeaks, riassigner, waveica |
Galaxy Europe |
Galaxy Australia, Galaxy France, Galaxy Canada |
0 |
|
3490 |
4375 |
3.933333 |
0 |
|
Metabolomics |
Mass spectrometry imaging: Finding differential analytes |
T00199 |
gxy.io/GTN:T00199 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-finding-nglycans/tutorial.html |
Metabolomics |
|
2019-04-13 |
2026-07-23 |
10 |
True |
False |
False |
True |
cardinal_combine, cardinal_preprocessing, join_files_on_column_fuzzy, cardinal_mz_images, maldi_quant_peak_detection, Grep1, cardinal_quality_report, Summary_Statistics1, maldi_quant_preprocessing, cardinal_segmentations, cardinal_classification, Filter1 |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
2382 |
3282 |
9.133333 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS preprocessing with XCMS |
T00197 |
gxy.io/GTN:T00197 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html |
Metabolomics |
Annotation, Spectral analysis, Visualisation, Data handling |
2020-02-04 |
2026-07-23 |
15 |
True |
True |
False |
False |
abims_xcms_xcmsSet, abims_xcms_retcor, msnbase_readmsdata, xcms_merge, xcms_plot_chromatogram, abims_xcms_group, intens_check, abims_CAMERA_annotateDiffreport, abims_xcms_fillPeaks, abims_xcms_summary, idchoice, xcms_export_samplemetadata |
Galaxy Main (US), Galaxy France |
Galaxy Europe, Galaxy Canada, Galaxy Norway |
0 |
|
4353185 |
9938465 |
7.250000 |
0 |
|
Metabolomics |
Mass spectrometry: LC-MS data processing |
T00196 |
gxy.io/GTN:T00196 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-dataprocessing/tutorial.html |
Metabolomics |
|
2021-12-14 |
2026-07-23 |
9 |
True |
False |
False |
False |
Batch_correction, quality_metrics, Multivariate, generic_filter, normalization, intens_check |
Galaxy France |
Galaxy Europe, Galaxy Canada, Galaxy Norway |
0 |
|
3607 |
4778 |
6.533333 |
0 |
|
Metabolomics |
Mass spectrometry: GC-MS analysis with the metaMS package |
T00194 |
gxy.io/GTN:T00194 |
https://training.galaxyproject.org//topics/metabolomics/tutorials/gcms/tutorial.html |
Metabolomics |
Visualisation, Data handling |
2021-09-22 |
2026-09-23 |
10 |
True |
False |
False |
False |
metams_runGC, abims_xcms_xcmsSet, msnbase_readmsdata, xcms_merge, xcms_plot_chromatogram, abims_xcms_group, abims_xcms_fillPeaks, xcms_export_samplemetadata |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada |
Galaxy Norway |
0 |
|
2093 |
3081 |
4.016667 |
0 |
|
Microbiome |
Introduction to Microbiome Analysis |
S00114 |
gxy.io/GTN:S00114 |
https://training.galaxyproject.org//topics/microbiome/tutorials/introduction/slides.html |
|
|
2017-06-22 |
2024-08-08 |
5 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927634 |
2.016667 |
0 |
|
Microbiome |
Analyses of metagenomics data - The global picture |
T00385 |
gxy.io/GTN:T00385 |
https://training.galaxyproject.org//topics/microbiome/tutorials/general-tutorial/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Sequencing quality control, Taxonomic classification, Sequence clustering, Phylogenetic analysis, DNA barcoding, Sequence read processing, Visualisation |
2017-06-22 |
2026-09-23 |
5 |
True |
False |
False |
True |
mothur_filter_seqs, mothur_make_biom, metaphlan2, mothur_classify_otu, taxonomy_krona_chart, humann2, mothur_make_shared, mothur_cluster_split, mothur_merge_files, mothur_classify_seqs, mothur_summary_seqs, mothur_align_seqs, metaphlan2krona, humann2_regroup_table, mothur_unique_seqs, mothur_make_group, humann2_renorm_table, mothur_screen_seqs, krona-text, mothur_pre_cluster, mothur_count_seqs |
|
Galaxy Australia, Galaxy France, Galaxy Norway |
0 |
|
12144 |
16336 |
5.766667 |
0 |
|
Microbiome |
Remove contamination and host reads |
T00568 |
gxy.io/GTN:T00568 |
https://training.galaxyproject.org//topics/microbiome/tutorials/host-removal/tutorial.html |
|
Read mapping, Sequencing quality control, Validation |
2025-12-18 |
2026-09-23 |
4 |
True |
False |
True |
True |
__ZIP_COLLECTION__, multiqc, bowtie2 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
706 |
859 |
10.350000 |
0 |
|
Microbiome |
Assembly of metagenomic sequencing data |
T00386 |
gxy.io/GTN:T00386 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-assembly/tutorial.html |
Metagenomics, Sequence assembly |
Sequence assembly validation, Read mapping, Data handling, Formatting, Sequence assembly visualisation, Read pre-processing, Sequence trimming, Visualisation, Sequence alignment analysis, Sequence contamination filtering, Primer removal, Sequencing quality control, Genome assembly, Sequence file editing, Statistical calculation, Variant calling, Local alignment, Sequence composition calculation |
2022-12-05 |
2026-09-23 |
12 |
True |
False |
True |
True |
bandage_info, cutadapt, bandage_image, collection_column_join, bowtie2, bamtools, megahit_contig2fastg, megahit, coverm_contig, bg_uniq, filter_tabular, ngsutils_bam_filter, quast, tp_cat, random_lines1, seqtk_subseq, metaspades, fastqc |
|
Galaxy Europe, Galaxy Main (US), Galaxy France |
0 |
|
6115 |
8335 |
10.233333 |
0 |
|
Microbiome |
Detection of shared microbial strains with SameStr |
T00591 |
gxy.io/GTN:T00591 |
https://training.galaxyproject.org//topics/microbiome/tutorials/samestr-strain-detection/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy |
Taxonomic classification |
2026-08-17 |
2026-09-23 |
2 |
True |
False |
False |
True |
metaphlan, __MERGE_COLLECTION__, samtools_view, samestr_stats, kneaddata, samestr_compare, pick_value, samestr_filter, samestr_merge, __FILTER_EMPTY_DATASETS__, samestr_convert, __APPLY_RULES__, samestr_summarize, __FLATTEN__ |
Galaxy Europe, Galaxy Main (US) |
|
0 |
|
78 |
90 |
2.583333 |
0 |
|
Microbiome |
Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition |
T00393 |
gxy.io/GTN:T00393 |
https://training.galaxyproject.org//topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.html |
Metagenomics, Public health and epidemiology, Taxonomy, Sequence assembly, Pathology, Sequence analysis |
Mapping assembly, Validation, Box-Whisker plot plotting, Taxonomic classification, Data handling, Cross-assembly, Sequence assembly visualisation, Pairwise sequence alignment, Sequence assembly, Visualisation, Sequence alignment analysis, Phylogenetic tree analysis, Sequence contamination filtering, Sequencing quality control, Aggregation, Multiple sequence alignment, Phylogenetic tree generation, Phylogenetic tree reconstruction, Base-calling, Genome assembly, Multilocus sequence typing, Statistical calculation, Mapping, Scatter plot plotting, Antimicrobial resistance prediction, Variant calling, De-novo assembly, Sequence composition calculation |
2023-01-26 |
2026-09-23 |
13 |
True |
False |
True |
True |
samtools_fastx, fasttree, newick_display, abricate, __BUILD_LIST__, samtools_coverage, tp_sorted_uniq, tp_cut_tool, clustalw, tab2fasta, fastp, flye, barchart_gnuplot, regex1, param_value_from_file, bcftools_consensus, taxonomy_krona_chart, clair3, split_file_to_collection, kraken2, tp_multijoin_tool, minimap2, Cut1, Paste1, ggplot2_heatmap, krakentools_kreport2krona, Remove beginning1, multiqc, Grep1, CONVERTER_gz_to_uncompressed, bedtools_getfastabed, tp_replace_in_column, medaka_consensus_pipeline, fasta2tab, bandage_image, mlst, table_compute, tp_head_tool, collection_element_identifiers, tp_split_on_column, fasta_merge_files_and_filter_unique_sequences, regexColumn1, porechop, nanoplot, bamtools_split_mapped, snpSift_extractFields, Count1, compose_text_param, add_line_to_file, krakentools_extract_kraken_reads, Grouping1, bcftools_norm, collection_column_join, Add_a_column1, collapse_dataset, __FILTER_FAILED_DATASETS__, __FILTER_EMPTY_DATASETS__, snpSift_filter, samtools_depth, tp_find_and_replace, fastqc |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia |
0 |
|
6344 |
9041 |
8.416667 |
0 |
|
Microbiome |
Identification of the micro-organisms in a beer using Nanopore sequencing |
T00384 |
gxy.io/GTN:T00384 |
https://training.galaxyproject.org//topics/microbiome/tutorials/beer-data-analysis/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis |
Sequence contamination filtering, Sequencing quality control, Aggregation, Statistical calculation, Taxonomic classification, Visualisation, Sequence composition calculation |
2022-09-29 |
2026-09-23 |
6 |
True |
False |
True |
True |
krakentools_kreport2krona, fastp, porechop, kraken2, taxonomy_krona_chart, Filter1, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
3720 |
5329 |
8.850000 |
0 |
|
Microbiome |
Antibiotic resistance detection |
T00394 |
gxy.io/GTN:T00394 |
https://training.galaxyproject.org//topics/microbiome/tutorials/plasmid-metagenomics-nanopore/tutorial.html |
Metagenomic sequencing, Public health and epidemiology, Metagenomics, Microbiology, Infectious disease, Sequence analysis, Antimicrobial resistance |
Mapping assembly, Aggregation, Box-Whisker plot plotting, Sequence assembly visualisation, Pairwise sequence alignment, Genome assembly, Scatter plot plotting, Antimicrobial resistance prediction, Sequence analysis, De-novo assembly |
2019-06-25 |
2026-09-23 |
5 |
True |
False |
True |
True |
gfa_to_fa, bandage_image, staramr_search, PlasFlow, unicycler, nanoplot, miniasm, minimap2, racon |
Galaxy Europe |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4670 |
6314 |
7.716667 |
0 |
|
Microbiome |
MGnify v5.0 Amplicon Pipeline |
T00552 |
gxy.io/GTN:T00552 |
https://training.galaxyproject.org//topics/microbiome/tutorials/mgnify-amplicon/tutorial.html |
Metagenomics, Taxonomy, Sequence analysis |
Validation, Nucleic acid design, Comparison, Formatting, DNA barcoding, Read pre-processing, Sequence trimming, Visualisation, Alignment, k-mer counting, Nucleic acid feature detection, Sequence contamination filtering, Sequencing quality control, Analysis, Sequence feature detection, Statistical calculation, Mapping, Sequence composition calculation |
2025-07-30 |
2026-09-23 |
4 |
True |
False |
False |
True |
biom_convert, fastq_dl, fastp, filter_tabular, param_value_from_file, infernal_cmsearch, taxonomy_krona_chart, query_tabular, CONVERTER_uncompressed_to_gz, __MERGE_COLLECTION__, wc_gnu, gops_concat_1, prinseq, multiqc, CONVERTER_gz_to_uncompressed, bedtools_getfastabed, bedtools_maskfastabed, mgnify_seqprep, trimmomatic, __FILTER_FROM_FILE__, collection_element_identifiers, ampvis2_heatmap, __UNZIP_COLLECTION__, lotus2, seqprep, ampvis2_load, Grouping1, collection_column_join, collapse_dataset, Add_a_column1, fastq_filter, tp_awk_tool, cmsearch_deoverlap, __FILTER_EMPTY_DATASETS__, fastq_to_fasta_python, cshl_fasta_formatter, tp_find_and_replace, mapseq, fastqc |
|
|
0 |
|
606 |
793 |
13.616667 |
0 |
|
Microbiome |
Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data |
T00501 |
gxy.io/GTN:T00501 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metaplasmidome_query/tutorial.html |
Genomics, Microbiology, Sequence analysis, Mobile genetic elements |
Pairwise sequence alignment, Visualisation |
2025-01-07 |
2026-09-23 |
3 |
True |
False |
False |
True |
Cut1, Grouping1, CONVERTER_fasta_to_tabular, Add_a_column1, ggplot2_histogram, cat1, tp_sorted_uniq, join1, tp_tail_tool, count_gff_features, tab2fasta, histogram_rpy, add_column_headers, sort1, minimap2, MQoutputfilter, tp_replace_in_column, Filter1 |
Galaxy France |
|
0 |
|
608 |
689 |
7.416667 |
0 |
|
Microbiome |
Metatranscriptomics analysis using microbiome RNA-seq data (short) |
T00389 |
gxy.io/GTN:T00389 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics-short/tutorial.html |
Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis |
Validation, Taxonomic classification, Phylogenetic analysis, Phylogenetic tree visualisation, Read pre-processing, Sequence trimming, Visualisation, Sequence alignment analysis, Primer removal, Sequencing quality control, Phylogenetic inference, Phylogenetic tree editing, Conversion, Statistical calculation, Sequence comparison, Sequence similarity search, Species frequency estimation, Sequence composition calculation |
2020-02-13 |
2026-09-23 |
7 |
True |
False |
True |
True |
metaphlan, humann_unpack_pathways, fastq_paired_end_interlacer, humann, taxonomy_krona_chart, humann_split_stratified_table, Cut1, multiqc, Grep1, graphlan_annotate, export2graphlan, humann_rename_table, humann_renorm_table, bg_sortmerna, graphlan, cutadapt, combine_metaphlan2_humann2, tp_sort_header_tool, humann_regroup_table, tp_find_and_replace, fastqc |
Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy Norway |
0 |
|
1252 |
1560 |
11.366667 |
0 |
|
Microbiome |
16S Microbial analysis with Nanopore data |
T00392 |
gxy.io/GTN:T00392 |
https://training.galaxyproject.org//topics/microbiome/tutorials/nanopore-16S-metagenomics/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Sequence contamination filtering, Sequencing quality control, Validation, Statistical calculation, Taxonomic classification, Visualisation, Sequence composition calculation |
2020-11-24 |
2026-09-23 |
6 |
True |
False |
False |
True |
Remove beginning1, fastp, porechop, multiqc, kraken2, taxonomy_krona_chart, datamash_reverse, tp_replace_in_line, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
11156 |
15423 |
5.750000 |
0 |
|
Microbiome |
Building an amplicon sequence variant (ASV) table from 16S data using DADA2 |
T00441 |
gxy.io/GTN:T00441 |
https://training.galaxyproject.org//topics/microbiome/tutorials/dada-16S/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Analysis, Visualisation, Variant calling, DNA barcoding, Deposition |
2024-06-05 |
2026-09-23 |
13 |
True |
False |
True |
True |
dada2_plotQualityProfile, dada2_dada, phyloseq_from_dada2, dada2_removeBimeraDenovo, __SORTLIST__, dada2_makeSequenceTable, dada2_seqCounts, dada2_filterAndTrim, dada2_assignTaxonomyAddspecies, tp_replace_in_column, tp_head_tool, cat1, collection_element_identifiers, dada2_mergePairs, __UNZIP_COLLECTION__, dada2_learnErrors, Grouping1, Add_a_column1, interactive_tool_phyloseq, tp_replace_in_line |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France |
|
0 |
|
10916 |
15506 |
5.650000 |
0 |
|
Microbiome |
Metatranscriptomics analysis using microbiome RNA-seq data |
T00388 |
gxy.io/GTN:T00388 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics/tutorial.html |
Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis |
Validation, Taxonomic classification, Phylogenetic analysis, Phylogenetic tree visualisation, Read pre-processing, Sequence trimming, Visualisation, Sequence alignment analysis, Primer removal, Sequencing quality control, Phylogenetic inference, Phylogenetic tree editing, Conversion, Aggregation, Statistical calculation, Sequence comparison, Sequence similarity search, Species frequency estimation, Sequence composition calculation |
2019-11-21 |
2026-09-23 |
7 |
True |
True |
True |
True |
metaphlan, humann_unpack_pathways, fastq_paired_end_interlacer, humann, taxonomy_krona_chart, humann_split_stratified_table, Cut1, multiqc, Grep1, graphlan_annotate, export2graphlan, humann_rename_table, humann_renorm_table, bg_sortmerna, graphlan, combine_metaphlan_humann, cutadapt, Grouping1, tp_sort_header_tool, humann_regroup_table, tp_find_and_replace, fastqc |
Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Europe, Galaxy Canada |
0 |
|
4354687 |
9938655 |
6.883333 |
0 |
|
Microbiome |
Binning of metagenomic sequencing data |
T00387 |
gxy.io/GTN:T00387 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-binning/tutorial.html |
Metagenomics, Sequence assembly |
Sequencing quality control, Validation, Sequence assembly validation, Read mapping, Sequence clustering, Genome annotation, Sequence assembly, Read binning, Statistical calculation, Genome comparison, Sequence composition calculation |
2023-12-05 |
2026-09-23 |
10 |
True |
False |
True |
True |
binette, checkm_lineage_wf, semibin, concoct, bowtie2, maxbin2, drep_dereplicate, __BUILD_LIST__, samtools_sort, concoct_cut_up_fasta, concoct_merge_cut_up_clustering, metabat2_jgi_summarize_bam_contig_depths, concoct_extract_fasta_bins, concoct_coverage_table, Fasta_to_Contig2Bin, das_tool, metabat2 |
Galaxy Europe, Galaxy France, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada |
0 |
|
8144 |
9945 |
5.550000 |
0 |
|
Microbiome |
Calculating α and β diversity from microbiome taxonomic data |
T00447 |
gxy.io/GTN:T00447 |
https://training.galaxyproject.org//topics/microbiome/tutorials/diversity/tutorial.html |
|
Visualisation, Aggregation |
2024-08-01 |
2026-09-23 |
8 |
True |
False |
True |
True |
krakentools_beta_diversity, krakentools_alpha_diversity |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
|
0 |
|
11177 |
13408 |
4.133333 |
0 |
|
Microbiome |
Taxonomic Profiling and Visualization of Metagenomic Data |
T00395 |
gxy.io/GTN:T00395 |
https://training.galaxyproject.org//topics/microbiome/tutorials/taxonomic-profiling/tutorial.html |
Metagenomics, Microbial ecology, Taxonomy, Sequence analysis |
Statistical calculation, Aggregation, Taxonomic classification, Visualisation, Genome annotation |
2023-05-03 |
2026-09-23 |
9 |
True |
False |
True |
True |
kraken_biom, est_abundance, metaphlan, krakentools_kreport2krona, __UNZIP_COLLECTION__, interactive_tool_phinch, interactive_tool_pavian, kraken2, taxonomy_krona_chart |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
|
0 |
|
16770 |
22090 |
5.600000 |
0 |
|
Microbiome |
Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 |
T00459 |
gxy.io/GTN:T00459 |
https://training.galaxyproject.org//topics/microbiome/tutorials/lotus2-identifying-fungi/tutorial.html |
|
Sequence feature detection, DNA barcoding |
2024-09-30 |
2026-09-23 |
3 |
True |
False |
False |
True |
lotus2 |
Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
|
0 |
|
1189 |
1446 |
7.700000 |
0 |
|
Microbiome |
Indexing and profiling microbes with MetaSBT |
T00551 |
gxy.io/GTN:T00551 |
https://training.galaxyproject.org//topics/microbiome/tutorials/metasbt/tutorial.html |
Microbial ecology, Taxonomy |
|
2025-08-25 |
2026-09-23 |
8 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
190 |
202 |
24.416667 |
0 |
|
Microbiome |
Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads |
T00569 |
gxy.io/GTN:T00569 |
https://training.galaxyproject.org//topics/microbiome/tutorials/mags-building/tutorial.html |
Metagenomics, Sequence assembly |
Sequencing quality control, Validation, Sequence assembly validation, Data handling, Genome annotation, Statistical calculation, Genome comparison, Sequence composition calculation |
2025-12-18 |
2026-05-18 |
6 |
True |
False |
True |
False |
Cut1, checkm_lineage_wf, fasterq_dump, Grouping1, collection_column_join, collapse_dataset, Remove beginning1, cat1, drep_dereplicate, tp_sort_header_tool, __EXTRACT_DATASET__, bakta, join1, kmetashot, multiqc, Summary_Statistics1, tp_replace_in_column |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
Galaxy Canada |
0 |
|
2009 |
2579 |
6.450000 |
0 |
|
Microbiome |
QIIME 2 Moving Pictures |
T00427 |
gxy.io/GTN:T00427 |
https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-moving-pictures/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
|
2024-03-14 |
2026-02-18 |
2 |
external |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
916 |
1370 |
10.133333 |
0 |
|
Microbiome |
QIIME 2 Cancer Microbiome Intervention |
T00412 |
gxy.io/GTN:T00412 |
https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-cancer-microbiome-intervention/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
|
2024-02-12 |
2024-03-14 |
3 |
external |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
613 |
967 |
13.750000 |
0 |
|
Microbiome |
16S Microbial Analysis with mothur (short) |
T00391 |
gxy.io/GTN:T00391 |
https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop-short/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Sequencing quality control, Taxonomic classification, Sequence clustering, Phylogenetic tree generation, Phylogenetic analysis, DNA barcoding, Phylogenetic tree reconstruction, Sequence read processing, Visualisation, Phylogenetic tree analysis |
2019-05-13 |
2026-09-23 |
7 |
True |
False |
True |
True |
mothur_filter_seqs, newick_display, mothur_classify_otu, mothur_sub_sample, mothur_heatmap_sim, mothur_venn, mothur_make_shared, mothur_remove_groups, mothur_cluster_split, mothur_classify_seqs, mothur_summary_seqs, mothur_unique_seqs, mothur_remove_lineage, mothur_chimera_vsearch, mothur_dist_seqs, mothur_rarefaction_single, mothur_count_groups, mothur_summary_single, mothur_tree_shared, collapse_dataset, XY_Plot_1, mothur_cluster, mothur_screen_seqs, mothur_remove_seqs, mothur_dist_shared, mothur_pre_cluster, mothur_count_seqs |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy France, Galaxy Canada |
0 |
|
7054 |
11777 |
8.050000 |
0 |
|
Microbiome |
16S Microbial Analysis with mothur (extended) |
T00390 |
gxy.io/GTN:T00390 |
https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop/tutorial.html |
Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding |
Sequencing quality control, Taxonomic classification, Sequence clustering, Phylogenetic tree generation, Phylogenetic analysis, DNA barcoding, Phylogenetic tree reconstruction, Sequence read processing, Visualisation, Phylogenetic tree analysis |
2017-02-12 |
2026-09-23 |
6 |
True |
False |
False |
True |
mothur_filter_seqs, mothur_get_groups, mothur_make_biom, newick_display, mothur_classify_otu, mothur_sub_sample, taxonomy_krona_chart, mothur_heatmap_sim, mothur_venn, mothur_make_contigs, mothur_make_shared, mothur_remove_groups, mothur_cluster_split, mothur_classify_seqs, mothur_summary_seqs, mothur_align_seqs, mothur_unique_seqs, mothur_remove_lineage, mothur_taxonomy_to_krona, mothur_chimera_vsearch, mothur_dist_seqs, mothur_count_groups, mothur_rarefaction_single, mothur_summary_single, mothur_tree_shared, XY_Plot_1, mothur_cluster, mothur_screen_seqs, mothur_remove_seqs, mothur_seq_error, mothur_dist_shared, mothur_pre_cluster, mothur_count_seqs |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
14969 |
21928 |
5.150000 |
0 |
|
Variant Analysis |
M. tuberculosis Variant Analysis |
T00319 |
gxy.io/GTN:T00319 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/tb-variant-analysis/tutorial.html |
Genomics, Microbiology, Sequence assembly, Genetic variation, Public health and epidemiology, Infectious disease |
Sequence contamination filtering, Sequence analysis, Sequencing quality control, Validation, Genome visualisation, Taxonomic classification, Phylogenetic tree generation, Phylogenetic tree visualisation, Global alignment, Statistical calculation, Antimicrobial resistance prediction, Sequence alignment, Sequence alignment analysis, Variant calling, Local alignment, Sequence composition calculation |
2020-07-25 |
2026-09-23 |
33 |
True |
False |
True |
True |
samtools_stats, jbrowse, tp_sed_tool, mosdepth, tb_profiler_profile, tbvcfreport, fastp, kraken2, bcftools_consensus, upload1, snippy, multiqc, tb_variant_filter, jvarkit_wgscoverageplotter, EMBOSS:%20seqret84, __FLATTEN__, EMBOSS: seqret84, tp_awk_tool, qualimap_bamqc, fastqc |
|
|
0 |
|
9039 |
13557 |
7.716667 |
0 |
|
Variant Analysis |
Pox virus genome analysis from tiled-amplicon sequencing data |
T00347 |
gxy.io/GTN:T00347 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/pox-tiled-amplicon/tutorial.html |
|
Sequence contamination filtering, Primer removal, Sequencing quality control, Multiple sequence alignment, Generation, Read mapping, Global alignment, Sequence alignment, Sequence alignment analysis, Sequence analysis, Local alignment, Genome indexing |
2023-05-15 |
2024-03-20 |
4 |
True |
False |
False |
True |
fasta_compute_length, fastp, mimodd_info, param_value_from_file, upload1, Cut1, samtools_view, fasta_regex_finder, ivar_trim, Grep1, __APPLY_RULES__, ivar_consensus, rbc_mafft, __ZIP_COLLECTION__, samtools_merge, datamash_ops, compose_text_param, fatovcf, bwa_mem, Add_a_column1, qualimap_bamqc, EMBOSS: maskseq51 |
Galaxy Europe |
Galaxy Main (US) |
0 |
|
1394 |
1618 |
7.783333 |
0 |
|
Variant Analysis |
Avian influenza viral strain analysis from gene segment sequencing data |
T00308 |
gxy.io/GTN:T00308 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/aiv-analysis/tutorial.html |
|
Sequence contamination filtering, Primer removal, Sequencing quality control, Multiple sequence alignment, Generation, Read mapping, Data handling, Phylogenetic analysis, Sequence file editing, Data retrieval, Sequence alignment, Sequence alignment analysis, Sequence analysis, De-novo assembly, Genome indexing |
2022-11-21 |
2024-10-04 |
10 |
True |
False |
False |
False |
samtools_view, bwa_mem, collapse_dataset, vapor, rbc_mafft, Show beginning1, __RELABEL_FROM_FILE__, qualimap_bamqc, fastp, iqtree, Grep1, tp_find_and_replace, upload1, seqtk_subseq, ivar_consensus, bamtools_split_ref |
Galaxy Europe, Galaxy Main (US) |
Galaxy Switzerland, Galaxy Canada |
0 |
|
2640 |
3711 |
8.050000 |
0 |
|
Single Cell |
Analysis of plant scRNA-Seq Data with Scanpy |
T00250 |
gxy.io/GTN:T00250 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plant/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2021-04-08 |
2026-06-25 |
8 |
True |
False |
True |
True |
scanpy_cluster_reduce_dimension, scanpy_plot, scanpy_normalize, scanpy_remove_confounders, scanpy_inspect, anndata_import, anndata_manipulate, scanpy_filter |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium |
Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
3372 |
4180 |
7.200000 |
0 |
|
Transcriptomics |
Whole transcriptome analysis of Arabidopsis thaliana |
T00292 |
gxy.io/GTN:T00292 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/mirna-target-finder/tutorial.html |
|
Primer removal, Sequencing quality control, Differential gene expression analysis, Validation, RNA-Seq quantification, Read mapping, Gene expression analysis, RNA-Seq analysis, Read pre-processing, Sequence trimming, Visualisation, Sequence composition calculation |
2021-04-08 |
2026-07-07 |
20 |
True |
True |
True |
True |
Cut1, __MERGE_COLLECTION__, salmon, trim_galore, falco, targetfinder, filter_by_fasta_ids, deseq2, cat1, rbc_mirdeep2_quantifier, multiqc, sample_seqs, sort1, rbc_mirdeep2_mapper, Filter1 |
|
Galaxy Canada |
0 |
|
4199567 |
9426492 |
8.866667 |
0 |
|
Sequence Analysis |
Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants |
T00511 |
gxy.io/GTN:T00511 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/tapscan-streptophyte-algae/tutorial.html |
|
Phylogenetic inference (from molecular sequences), Phylogenetic tree editing, Multiple sequence alignment, Sequence analysis, Phylogenetic analysis |
2025-03-26 |
2026-09-23 |
3 |
True |
False |
True |
True |
Cut1, filter_by_fasta_ids, Remove beginning1, quicktree, iqtree, trimal, tapscan_classify, ete_treeviewer, Filter1, rbc_mafft |
Galaxy Europe, Galaxy Belgium |
Galaxy Canada |
0 |
|
607 |
782 |
13.966667 |
0 |
|
Sequence Analysis |
NCBI BLAST+ against the MAdLand |
T00238 |
gxy.io/GTN:T00238 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-blast-against-the-madland/tutorial.html |
|
Sequence alignment analysis |
2023-01-16 |
2026-09-23 |
10 |
True |
False |
False |
False |
bg_diamond, ncbi_blastp_wrapper, ncbi_blastx_wrapper |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
2088 |
2629 |
10.100000 |
0 |
|
Proteomics |
Introduction to proteomics, protein identification, quantification and statistical modelling |
S00080 |
gxy.io/GTN:S00080 |
https://training.galaxyproject.org//topics/proteomics/tutorials/introduction/slides.html |
|
|
2017-12-01 |
2024-08-08 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927639 |
2.016667 |
0 |
|
Proteomics |
Statistical analysis of DIA data |
T00210 |
gxy.io/GTN:T00210 |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_MSstats/tutorial.html |
|
Differential protein expression profiling, Spectrum calculation, Tag-based peptide identification |
2020-12-02 |
2023-11-09 |
9 |
True |
False |
False |
True |
msstats, Grep1, Filter1, histogram_rpy |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium, Galaxy Norway |
Galaxy Australia, Galaxy Canada |
0 |
|
1618 |
2218 |
9.983333 |
0 |
|
Proteomics |
Peptide Library Data Analysis |
T00227 |
gxy.io/GTN:T00227 |
https://training.galaxyproject.org//topics/proteomics/tutorials/peptide-library-data-analysis/tutorial.html |
|
|
2021-01-22 |
2023-11-09 |
5 |
True |
False |
False |
True |
pdaug_basic_plots, pdaug_merge_dataframes, pdaug_peptide_data_access, pdaug_peptide_sequence_analysis, pdaug_addclasslabel, pdaug_sequence_property_based_descriptors, pdaug_fishers_plot, pdaug_tsvtofasta |
Galaxy Belgium |
|
0 |
|
905 |
1182 |
10.900000 |
0 |
|
Proteomics |
Peptide and Protein ID using OpenMS tools |
T00228 |
gxy.io/GTN:T00228 |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-oms/tutorial.html |
|
Filtering, Formatting |
2017-10-16 |
2026-09-23 |
33 |
True |
False |
False |
True |
FalseDiscoveryRate, IDMerger, FileInfo, IDPosteriorErrorProbability, IDFilter, IDScoreSwitcher, ConsensusID, msconvert, MSGFPlusAdapter, PeakPickerHiRes, PeptideIndexer, FidoAdapter, Grep1, TextExporter, XTandemAdapter |
|
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
3875 |
6327 |
8.133333 |
0 |
|
Proteomics |
Library Generation for DIA Analysis |
T00212 |
gxy.io/GTN:T00212 |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_lib_OSW/tutorial.html |
|
Principal component plotting, Clustering, Heat map generation, Imputation, Statistical calculation, Protein quantification, Standardisation and normalisation, Visualisation |
2020-12-02 |
2025-06-02 |
12 |
True |
False |
False |
True |
diapysef, OpenSwathAssayGenerator, OpenSwathDecoyGenerator, TargetedFileConverter, maxquant, Filter1 |
Galaxy Europe |
Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
5066 |
6514 |
4.683333 |
0 |
|
Proteomics |
Neoantigen 1b: Non-Reference-Database-Generation |
T00543 |
gxy.io/GTN:T00543 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-non-reference-database-generation/tutorial.html |
|
Statistical calculation, RNA-Seq analysis, Transcriptome assembly, Sequence alignment, Sequence annotation, Variant calling |
2025-01-14 |
2026-09-23 |
7 |
True |
False |
False |
False |
fasta2tab, gffcompare_to_bed, hisat2, gffcompare, sqlite_to_tabular, bed_to_protein_map, column_regex_find_and_replace, fasta_merge_files_and_filter_unique_sequences, translate_bed, regexColumn1, concatenate, tab2fasta, freebayes, custom_pro_db, stringtie, CONVERTER_gz_to_uncompressed |
|
|
0 |
|
338 |
385 |
14.916667 |
0 |
|
Proteomics |
Clinical Metaproteomics 5: Data Interpretation |
T00417 |
gxy.io/GTN:T00417 |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-5-data-interpretation/tutorial.html |
|
Visualisation, Prediction and recognition |
2024-02-06 |
2026-09-23 |
5 |
True |
False |
True |
True |
unipept, msstatstmt, Grep1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
|
0 |
|
439 |
541 |
28.233333 |
0 |
|
Proteomics |
Neoantigen 1a: Fusion-Database-Generation |
T00541 |
gxy.io/GTN:T00541 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fusion-database-generation/tutorial.html |
|
Sequence alignment |
2025-01-14 |
2026-09-23 |
5 |
True |
False |
False |
False |
arriba, tp_awk_tool, arriba_get_filters, tab2fasta, regex1, rna_star, CONVERTER_gz_to_uncompressed, query_tabular |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy Canada |
0 |
|
437 |
543 |
11.083333 |
0 |
|
Proteomics |
Single Cell Proteomics data analysis with bioconductor-scp |
T00502 |
gxy.io/GTN:T00502 |
https://training.galaxyproject.org//topics/proteomics/tutorials/bioconductor-scp/tutorial.html |
|
Visualisation, Expression analysis |
2025-02-07 |
2026-09-23 |
3 |
True |
False |
False |
False |
Grouping1, bioconductor_scp |
Galaxy Europe, Galaxy Australia, Galaxy Canada |
|
0 |
|
607 |
679 |
9.216667 |
0 |
|
Proteomics |
Biomarker candidate identification |
T00213 |
gxy.io/GTN:T00213 |
https://training.galaxyproject.org//topics/proteomics/tutorials/biomarker_selection/tutorial.html |
|
|
2019-06-13 |
2023-11-09 |
9 |
True |
False |
False |
True |
IDconverter, tp_cut_tool, Jvenn, rna_abbased_data, prot_features, MQoutputfilter, retrieve_from_hpa, retr_pepatlas1 |
|
Galaxy France, Galaxy Belgium |
0 |
|
2013 |
2717 |
9.683333 |
0 |
|
Proteomics |
DIA Analysis using OpenSwathWorkflow |
T00211 |
gxy.io/GTN:T00211 |
https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_OSW/tutorial.html |
|
Filtering, Formatting |
2020-12-02 |
2025-05-20 |
12 |
True |
False |
False |
True |
pyprophet_score, pyprophet_export, msconvert, OpenSwathWorkflow, pyprophet_peptide, pyprophet_protein, Grep1, pyprophet_merge |
Galaxy Europe |
Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
3693 |
5114 |
8.083333 |
0 |
|
Proteomics |
EncyclopeDIA |
T00215 |
gxy.io/GTN:T00215 |
https://training.galaxyproject.org//topics/proteomics/tutorials/encyclopedia/tutorial.html |
|
Filtering, Formatting |
2021-06-21 |
2026-09-23 |
13 |
True |
False |
True |
True |
encyclopedia_quantify, msconvert, encyclopedia_searchtolib |
|
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
0 |
|
2274 |
3026 |
8.883333 |
0 |
|
Proteomics |
MaxQuant and MSstats for the analysis of label-free data |
T00219 |
gxy.io/GTN:T00219 |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-dda-lfq/tutorial.html |
|
Principal component plotting, Clustering, Heat map generation, Imputation, Spectrum calculation, Statistical calculation, Protein quantification, Standardisation and normalisation, Differential protein expression profiling, Visualisation, Tag-based peptide identification |
2021-02-17 |
2025-09-22 |
19 |
True |
False |
True |
True |
Cut1, fasta2tab, uniprot, ggplot2_heatmap2, msstats, tp_easyjoin_tool, Grep1, maxquant, Summary_Statistics1, datamash_ops, tp_replace_in_column, Filter1 |
|
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
9537 |
14993 |
6.316667 |
0 |
|
Proteomics |
Annotating a protein list identified by LC-MS/MS experiments |
T00234 |
gxy.io/GTN:T00234 |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteome_annotation/tutorial.html |
|
|
2019-09-12 |
2026-09-23 |
12 |
True |
False |
True |
True |
IDconverter, Jvenn, rna_abbased_data, MQoutputfilter, retrieve_from_hpa, reactome_analysis, cluter_profiler |
Galaxy Belgium |
Galaxy France |
0 |
|
3382 |
4819 |
8.600000 |
0 |
|
Proteomics |
Machine Learning Modeling of Anticancer Peptides |
T00225 |
gxy.io/GTN:T00225 |
https://training.galaxyproject.org//topics/proteomics/tutorials/ml-modeling-of-anti-cancer-peptides/tutorial.html |
|
|
2021-01-22 |
2026-09-23 |
9 |
True |
False |
False |
True |
pdaug_ml_models, pdaug_basic_plots, pdaug_merge_dataframes, pdaug_addclasslabel, pdaug_sequence_property_based_descriptors |
Galaxy Belgium |
|
0 |
|
1216 |
1766 |
12.100000 |
0 |
|
Proteomics |
Protein FASTA Database Handling |
T00214 |
gxy.io/GTN:T00214 |
https://training.galaxyproject.org//topics/proteomics/tutorials/database-handling/tutorial.html |
Proteomics |
|
2017-02-14 |
2025-04-08 |
30 |
True |
False |
False |
True |
fasta2tab, fasta_merge_files_and_filter_unique_sequences, addValue, tab2fasta, DecoyDatabase, dbbuilder |
Galaxy Europe, Galaxy Australia |
Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
5195 |
8071 |
8.550000 |
0 |
|
Proteomics |
Peptide and Protein ID using SearchGUI and PeptideShaker |
T00229 |
gxy.io/GTN:T00229 |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-sg-ps/tutorial.html |
|
|
2017-06-12 |
2026-09-23 |
29 |
True |
False |
False |
True |
peptide_shaker, PeakPickerHiRes, FileConverter, search_gui, Grep1 |
|
|
0 |
|
3612 |
5575 |
6.233333 |
0 |
|
Proteomics |
metaQuantome 2: Function |
T00223 |
gxy.io/GTN:T00223 |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-function/tutorial.html |
Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics |
Indexing, Statistical inference, Quantification, Visualisation, Principal component visualisation, Functional clustering, Differential protein expression analysis, Query and retrieval, Heat map generation, Filtering |
2020-10-29 |
2026-09-23 |
15 |
True |
False |
False |
True |
metaquantome_filter, metaquantome_expand, metaquantome_sample, metaquantome_stat, metaquantome_db, metaquantome_viz |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
514 |
689 |
15.766667 |
0 |
|
Proteomics |
Neoantigen 2: Database merge and FragPipe discovery |
T00540 |
gxy.io/GTN:T00540 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fragpipe-discovery/tutorial.html |
|
|
2025-01-14 |
2026-09-23 |
5 |
True |
False |
False |
False |
collapse_dataset, Remove beginning1, validate_fasta_database, fragpipe_manifest_generator, fasta_merge_files_and_filter_unique_sequences, fragpipe, Grep1, query_tabular |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy Canada |
0 |
|
563 |
643 |
11.083333 |
0 |
|
Proteomics |
Clinical Metaproteomics 2: Discovery |
T00414 |
gxy.io/GTN:T00414 |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-2-discovery/tutorial.html |
|
Principal component plotting, Formatting, Clustering, Heat map generation, Imputation, Statistical calculation, Protein quantification, Standardisation and normalisation, Visualisation, Filtering |
2024-02-06 |
2026-09-23 |
6 |
True |
False |
True |
True |
Cut1, fasta2tab, ident_params, peptide_shaker, Grouping1, fasta_cli, search_gui, msconvert, Remove beginning1, fasta_merge_files_and_filter_unique_sequences, filter_tabular, Grep1, maxquant, tp_cat, query_tabular, Filter1, dbbuilder |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada |
Galaxy France, Galaxy Belgium |
0 |
|
514 |
636 |
22.616667 |
0 |
|
Proteomics |
Peptide and Protein Quantification via Stable Isotope Labelling (SIL) |
T00230 |
gxy.io/GTN:T00230 |
https://training.galaxyproject.org//topics/proteomics/tutorials/protein-quant-sil/tutorial.html |
|
|
2017-03-17 |
2026-09-23 |
33 |
True |
False |
False |
True |
FalseDiscoveryRate, FileInfo, TextExporter, IDMapper, IDPosteriorErrorProbability, FeatureFinderMultiplex, IDScoreSwitcher, PeptideIndexer, MultiplexResolver, FidoAdapter, IDConflictResolver, Grep1, histogram_rpy, Summary_Statistics1, tp_tail_tool, ProteinQuantifier, XTandemAdapter |
Galaxy Europe |
Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
1588 |
2129 |
9.883333 |
0 |
|
Proteomics |
Detection and quantitation of N-termini (degradomics) via N-TAILS |
T00226 |
gxy.io/GTN:T00226 |
https://training.galaxyproject.org//topics/proteomics/tutorials/ntails/tutorial.html |
Proteomics |
|
2017-02-14 |
2025-04-08 |
16 |
True |
False |
False |
True |
FalseDiscoveryRate, IDMerger, FileFilter, HighResPrecursorMassCorrector, IDMapper, PeptideIndexer, FeatureFinderMultiplex, IDFilter, ConsensusID, MSGFPlusAdapter, MzTabExporter, IDConflictResolver, FileMerger |
|
|
0 |
|
1050 |
1382 |
7.333333 |
0 |
|
Proteomics |
Neoantigen 5a: Predicting HLA Binding |
T00545 |
gxy.io/GTN:T00545 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-predicting-hla-binding/tutorial.html |
|
Read mapping, Genetic variation analysis |
2025-01-14 |
2026-09-23 |
5 |
True |
False |
False |
False |
seq2hla, query_tabular, optitype, tp_awk_tool |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada |
|
0 |
|
274 |
299 |
15.983333 |
0 |
|
Proteomics |
Proteogenomics 2: Database Search |
T00232 |
gxy.io/GTN:T00232 |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbsearch/tutorial.html |
|
Peptide database search, Conversion |
2018-11-20 |
2026-09-23 |
26 |
True |
False |
True |
True |
ident_params, peptide_shaker, search_gui, mz_to_sqlite, tab2fasta, query_tabular |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
|
0 |
|
1805 |
2608 |
12.383333 |
0 |
|
Proteomics |
Neoantigen 3: PepQuery2 Verification |
T00544 |
gxy.io/GTN:T00544 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-peptide-verification/tutorial.html |
|
Filtering, Formatting |
2025-01-14 |
2026-09-23 |
5 |
True |
False |
False |
False |
msconvert, ncbi_blastp_wrapper, tab2fasta, query_tabular, pepquery2 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada |
Galaxy Switzerland, Galaxy Belgium |
0 |
|
268 |
294 |
13.183333 |
0 |
|
Proteomics |
Neoantigen 4: Variant Annotation |
T00546 |
gxy.io/GTN:T00546 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-variant-annotation/tutorial.html |
|
|
2025-01-14 |
2026-09-23 |
6 |
True |
False |
False |
False |
select, cut, column_regex_find_and_replace, regexColumn1, tab2fasta, Convert characters1, pep_pointer, query_tabular |
|
|
0 |
|
264 |
293 |
13.183333 |
0 |
|
Proteomics |
metaQuantome 1: Data creation |
T00222 |
gxy.io/GTN:T00222 |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-data-creation/tutorial.html |
Proteomics, Proteogenomics, Biodiversity, Taxonomy |
Label-free quantification, Visualisation, Filtering, Formatting, Prediction and recognition |
2020-10-16 |
2026-09-23 |
21 |
True |
False |
False |
True |
Cut1, unipept, peptide_shaker, search_gui, msconvert, Remove beginning1, flashlfq, Grep1, regex1, query_tabular, tp_replace_in_column, Filter1, tp_replace_in_line |
Galaxy Europe |
Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
1010 |
1632 |
9.333333 |
0 |
|
Proteomics |
Metaproteomics tutorial |
T00221 |
gxy.io/GTN:T00221 |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaproteomics/tutorial.html |
Proteomics, Proteogenomics, Biodiversity, Taxonomy |
Visualisation, Prediction and recognition |
2017-06-28 |
2026-09-23 |
43 |
True |
False |
True |
True |
unipept, peptide_shaker, search_gui, sqlite_to_tabular, query_tabular |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
3331 |
5148 |
10.000000 |
0 |
|
Proteomics |
Clinical Metaproteomics 1: Database-Generation |
T00413 |
gxy.io/GTN:T00413 |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-1-database-generation/tutorial.html |
|
de Novo sequencing, Tag-based peptide identification, Protein identification, Target-Decoy, Expression analysis |
2024-02-06 |
2026-09-23 |
8 |
True |
False |
True |
True |
fasta_merge_files_and_filter_unique_sequences, uniprotxml_downloader, dbbuilder, metanovo |
Galaxy Europe, Galaxy Australia |
Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
0 |
|
853 |
1183 |
19.966667 |
0 |
|
Proteomics |
Secretome Prediction |
T00235 |
gxy.io/GTN:T00235 |
https://training.galaxyproject.org//topics/proteomics/tutorials/secretome-prediction/tutorial.html |
|
|
2017-04-13 |
2026-09-23 |
16 |
True |
False |
False |
True |
comp1, wolf_psort, uniprot, tp_easyjoin_tool, tp_sorted_uniq, tp_cut_tool, get_subontology_from, Convert characters1, Grep1, bg_uniq, term_id_vs_term_name, Filter1 |
|
|
0 |
|
740 |
1061 |
8.083333 |
0 |
|
Proteomics |
Proteogenomics 3: Novel peptide analysis |
T00233 |
gxy.io/GTN:T00233 |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-novel-peptide-analysis/tutorial.html |
|
|
2018-11-20 |
2026-09-23 |
21 |
True |
False |
True |
True |
pep_pointer, query_tabular, ncbi_blastp_wrapper, peptide_genomic_coordinate |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
2007 |
2815 |
13.583333 |
0 |
|
Proteomics |
Clinical Metaproteomics 4: Quantitation |
T00416 |
gxy.io/GTN:T00416 |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-4-quantitation/tutorial.html |
|
Principal component plotting, Clustering, Heat map generation, Imputation, Statistical calculation, Protein quantification, Standardisation and normalisation, Visualisation |
2024-02-06 |
2026-09-23 |
6 |
True |
False |
True |
True |
Cut1, Grouping1, Grep1, maxquant |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
308 |
380 |
24.250000 |
0 |
|
Proteomics |
Multiomics data analysis using MultiGSEA |
T00503 |
gxy.io/GTN:T00503 |
https://training.galaxyproject.org//topics/proteomics/tutorials/multiGSEA-tutorial/tutorial.html |
|
Gene-set enrichment analysis, Aggregation, Pathway analysis |
2025-03-10 |
2026-09-23 |
3 |
True |
False |
False |
True |
tp_grep_tool, multigsea, Filter1 |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
Galaxy Australia |
0 |
|
746 |
853 |
5.916667 |
0 |
|
Proteomics |
Mass spectrometry imaging: Loading and exploring MSI data |
T00217 |
gxy.io/GTN:T00217 |
https://training.galaxyproject.org//topics/proteomics/tutorials/mass-spectrometry-imaging-loading-exploring-data/tutorial.html |
Proteomics |
|
2018-11-27 |
2026-09-23 |
20 |
True |
False |
False |
True |
tp_sort_header_tool, cardinal_data_exporter, Grep1, cardinal_quality_report |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
3233 |
4763 |
6.450000 |
0 |
|
Proteomics |
metaQuantome 3: Taxonomy |
T00224 |
gxy.io/GTN:T00224 |
https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-taxonomy/tutorial.html |
Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics, Taxonomy |
Indexing, Statistical inference, Quantification, Visualisation, Principal component visualisation, Functional clustering, Differential protein expression analysis, Query and retrieval, Heat map generation, Filtering |
2020-10-29 |
2026-09-23 |
15 |
True |
False |
False |
True |
metaquantome_filter, metaquantome_expand, metaquantome_sample, metaquantome_stat, metaquantome_db, metaquantome_viz |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway |
0 |
|
539 |
680 |
18.316667 |
0 |
|
Proteomics |
Clinical Metaproteomics 3: Verification |
T00415 |
gxy.io/GTN:T00415 |
https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-3-verification/tutorial.html |
|
|
2024-02-06 |
2026-09-23 |
8 |
True |
False |
True |
True |
Cut1, Grouping1, collapse_dataset, Remove beginning1, uniprotxml_downloader, fasta_merge_files_and_filter_unique_sequences, tp_cat, query_tabular, pepquery2, Filter1, dbbuilder |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Switzerland |
0 |
|
342 |
427 |
27.133333 |
0 |
|
Proteomics |
Proteogenomics 1: Database Creation |
T00231 |
gxy.io/GTN:T00231 |
https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbcreation/tutorial.html |
|
Statistical calculation, RNA-Seq analysis, Transcriptome assembly, Sequence alignment, Sequence annotation, Variant calling |
2018-11-20 |
2026-09-23 |
31 |
True |
False |
True |
True |
fasta2tab, gffcompare_to_bed, hisat2, gffcompare, sqlite_to_tabular, cat_multi_datasets, bed_to_protein_map, fasta_merge_files_and_filter_unique_sequences, regexColumn1, stringtie, tab2fasta, freebayes, custom_pro_db, filter_tabular, translate_bed, query_tabular, tp_replace_in_column |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
Galaxy Canada |
0 |
|
6655 |
10620 |
6.866667 |
0 |
|
Proteomics |
MaxQuant and MSstats for the analysis of TMT data |
T00220 |
gxy.io/GTN:T00220 |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.html |
|
Principal component plotting, Clustering, Heat map generation, Imputation, Statistical calculation, Protein quantification, Standardisation and normalisation, Visualisation |
2021-08-13 |
2025-01-08 |
11 |
True |
False |
False |
True |
msstatstmt, maxquant |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy Switzerland, Galaxy Canada |
0 |
|
4705 |
6243 |
4.466667 |
0 |
|
Proteomics |
Label-free data analysis using MaxQuant |
T00218 |
gxy.io/GTN:T00218 |
https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-label-free/tutorial.html |
|
Principal component plotting, Clustering, Heat map generation, Imputation, Spectrum calculation, Statistical calculation, Protein quantification, Standardisation and normalisation, Differential protein expression profiling, Visualisation, Tag-based peptide identification |
2020-04-29 |
2025-05-21 |
14 |
True |
False |
False |
True |
Cut1, Add_a_column1, msstats, tp_sort_header_tool, Grep1, histogram_rpy, maxquant, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium, Galaxy Norway |
Galaxy Australia, Galaxy Canada |
0 |
|
21524 |
31069 |
3.733333 |
0 |
|
Proteomics |
Neoantigen 5b: IEDB binding Validated Neopeptides |
T00542 |
gxy.io/GTN:T00542 |
https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-hla-binding-novel-peptides/tutorial.html |
|
|
2025-01-14 |
2026-09-23 |
6 |
True |
False |
False |
False |
table_compute, iedb_api, fasta_to_tabular, query_tabular, Filter1 |
|
|
0 |
|
258 |
278 |
9.383333 |
0 |
|
Proteomics |
Label-free versus Labelled - How to Choose Your Quantitation Method |
T00216 |
gxy.io/GTN:T00216 |
https://training.galaxyproject.org//topics/proteomics/tutorials/labelfree-vs-labelled/tutorial.html |
|
|
2017-03-17 |
2025-05-27 |
18 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
7918 |
12650 |
2.650000 |
0 |
|
Sequence Analysis |
Mapping |
T00237 |
gxy.io/GTN:T00237 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/mapping/tutorial.html |
Mapping |
Sequence alignment analysis, Read mapping, Data handling, Genome visualisation |
2016-10-04 |
2026-09-23 |
48 |
True |
True |
True |
True |
samtools_stats, bamFilter, jbrowse, bowtie2 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
4418019 |
10045739 |
9.450000 |
0 |
|
Sequence Analysis |
Screening assembled genomes for contamination using NCBI FCS |
T00439 |
gxy.io/GTN:T00439 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-fcs/tutorial.html |
|
Sequence contamination filtering, Sequence trimming, Sequence assembly validation |
2024-04-16 |
2026-09-23 |
3 |
True |
False |
False |
True |
ncbi_fcs_adaptor, ncbi_fcs_gx |
Galaxy Europe, Galaxy Main (US), Galaxy Canada, Galaxy Belgium |
Galaxy Australia, Galaxy Switzerland |
0 |
|
2778 |
3636 |
3.750000 |
0 |
|
Sequence Analysis |
Quality Control |
T00239 |
gxy.io/GTN:T00239 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-control/tutorial.html |
|
Primer removal, Sequencing quality control, Validation, Box-Whisker plot plotting, Scatter plot plotting, Statistical calculation, Read pre-processing, Sequence trimming, Sequence composition calculation |
2016-10-04 |
2026-09-23 |
50 |
True |
True |
True |
True |
cutadapt, nanoplot, multiqc, fastqe, pycoqc, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy France, Galaxy Canada |
0 |
|
4465830 |
10140032 |
9.000000 |
0 |
|
Sequence Analysis |
Quality and contamination control in bacterial isolate using Illumina MiSeq Data |
T00446 |
gxy.io/GTN:T00446 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.html |
Whole genome sequencing, Genomics, Microbiology, Microbial ecology |
Sequence contamination filtering, Sequencing quality control, Taxonomic classification, Read mapping, Cross-assembly, Statistical calculation, Visualisation, Expression analysis |
2024-07-15 |
2026-09-23 |
6 |
True |
False |
True |
True |
est_abundance, falco, recentrifuge, fastp, kraken2, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Switzerland, Galaxy Canada |
0 |
|
2423 |
3151 |
9.950000 |
0 |
|
Sequence Analysis |
Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes |
T00512 |
gxy.io/GTN:T00512 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/viral_primer_design/tutorial.html |
|
Sequence alignment, Multiple sequence alignment, Local alignment, PCR primer design, Sequence alignment analysis, Sequence analysis, Global alignment |
2025-03-20 |
2026-09-23 |
4 |
True |
False |
False |
True |
fasta_compute_length, varvamp, EMBOSS: degapseq20, ncbi_makeblastdb, split_file_to_collection, rbc_mafft |
Galaxy Europe, Galaxy Canada, Galaxy Belgium |
|
0 |
|
1384 |
1636 |
2.833333 |
0 |
|
Sequence Analysis |
Clean and manage Sanger sequences from raw files to aligned consensus |
T00383 |
gxy.io/GTN:T00383 |
https://training.galaxyproject.org//topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.html |
|
Sequencing quality control, Taxonomic classification, Sequence clustering, Demultiplexing, Data handling, Phylogenetic analysis, DNA barcoding, Sequence file editing, Sequence read processing, Visualisation |
2024-01-08 |
2026-09-23 |
3 |
True |
False |
False |
True |
ncbi_blastn_wrapper, mothur_degap_seqs, cshl_fastq_to_fasta, tab2fasta, regex1, fastq_to_tabular, fastq_groomer, unzip, filter_by_fasta_ids, ab1_fastq_converter, __SORTLIST__, aligned_to_consensus, mothur_merge_files, qiime_align_seqs, __FILTER_FROM_FILE__, collection_element_identifiers, cshl_fastx_reverse_complement, seqtk_mergepe, seqtk_trimfq, fastq_masker_by_quality |
Galaxy Europe, Galaxy France |
Galaxy Canada |
0 |
|
4604 |
5653 |
6.500000 |
0 |
|
Single Cell |
Single-cell quality control with scater |
T00255 |
gxy.io/GTN:T00255 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scater-qc/tutorial.html |
|
Sequencing quality control, Read pre-processing, Sequence visualisation |
2019-10-23 |
2025-02-14 |
6 |
True |
False |
False |
True |
scater_plot_pca, scater_create_qcmetric_ready_sce, scater_filter, scater_plot_dist_scatter |
Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Belgium, Galaxy Norway |
Galaxy Canada |
0 |
|
860 |
957 |
7.000000 |
0 |
|
Single Cell |
Pre-processing of 10X Single-Cell RNA Datasets |
T00252 |
gxy.io/GTN:T00252 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing-tenx/tutorial.html |
|
Sequencing quality control, Community profiling, Validation, Sequence alignment, Loading |
2019-09-11 |
2026-09-23 |
14 |
True |
False |
True |
True |
dropletutils, multiqc, rna_starsolo |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
14826 |
19155 |
5.950000 |
0 |
|
Single Cell |
Bulk RNA Deconvolution with MuSiC |
T00240 |
gxy.io/GTN:T00240 |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music/tutorial.html |
|
|
2022-02-11 |
2026-09-23 |
12 |
True |
False |
True |
True |
music_construct_eset, music_inspect_eset, music_deconvolution |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
|
0 |
|
4812 |
5948 |
3.983333 |
0 |
|
Single Cell |
Pre-processing of 10X Single-Cell ATAC-seq Datasets |
T00335 |
gxy.io/GTN:T00335 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-preprocessing-tenx/tutorial.html |
|
Differential gene expression analysis, Sequencing quality control, Expression profile clustering, Peak calling, Generation, Enrichment analysis, Read mapping, Sequence composition calculation, Imputation, Gene regulatory network analysis, Statistical calculation, Mapping, Sequence alignment, Visualisation, Principal component visualisation, Genome indexing |
2023-04-24 |
2026-09-23 |
11 |
True |
False |
False |
True |
sinto_barcode, sinto_fragments, bwa_mem, episcanpy_preprocess, anndata_inspect, falco, scanpy_plot, bedtools_sortbed, tp_sorted_uniq, macs2_callpeak, episcanpy_build_matrix, fastqc |
Galaxy Main (US), Galaxy Australia |
Galaxy Canada, Galaxy Belgium |
0 |
|
6945 |
8162 |
2.466667 |
0 |
|
Single Cell |
Converting between common single cell data formats |
T00418 |
gxy.io/GTN:T00418 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-ingest/tutorial.html |
|
Community profiling, Loading |
2024-02-13 |
2026-06-25 |
5 |
True |
False |
False |
True |
Cut1, datamash_transpose, seurat_read10x, anndata_inspect, tabular_to_fastq, dropletutils, monocle3_create, scanpy_filter_cells, dropletutils_read_10x, tp_cut_tool, regexColumn1, join1, fastq_to_tabular, tp_tail_tool, anndata_ops, sceasy_convert, Filter1 |
|
Galaxy Main (US) |
0 |
|
3386 |
3938 |
4.050000 |
0 |
|
Single Cell |
Pre-processing of Single-Cell RNA Data |
T00251 |
gxy.io/GTN:T00251 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing/tutorial.html |
|
Sequencing quality control, Validation, Sequence alignment, RNA-Seq quantification, Read summarisation, Sequence alignment analysis, Data handling |
2019-02-22 |
2026-09-23 |
6 |
True |
True |
False |
True |
samtools_stats, collection_column_join, tp_sed_tool, umi_tools_extract, featurecounts, bamFilter, umi_tools_count, multiqc, rna_star, __FLATTEN__ |
Galaxy Europe |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
4353365 |
9936938 |
8.916667 |
0 |
|
Single Cell |
Generating a single cell matrix using Alevin |
T00245 |
gxy.io/GTN:T00245 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin/tutorial.html |
|
Gene expression analysis, RNA-Seq quantification, Sequence composition calculation |
2021-03-03 |
2026-09-23 |
26 |
True |
False |
True |
True |
Cut1, anndata_inspect, _ensembl_gtf2gene_list, sceasy_convert, _salmon_kallisto_mtx_to_10x, _dropletBarcodePlot, join1, dropletutils_empty_drops, anndata_manipulate, alevin, dropletutils_read_10x |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium |
|
0 |
|
4106 |
6127 |
10.800000 |
0 |
|
Single Cell |
An introduction to scRNA-seq data analysis |
S00084 |
gxy.io/GTN:S00084 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-intro/slides.html |
|
|
2021-01-29 |
2025-02-13 |
8 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4313686 |
9813606 |
2.016667 |
0 |
|
Single Cell |
Generating a single cell matrix using Alevin and combining datasets (bash + R) |
T00378 |
gxy.io/GTN:T00378 |
https://training.galaxyproject.org//topics/single-cell/tutorials/alevin-commandline/tutorial.html |
|
|
2023-12-08 |
2025-04-22 |
5 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
845 |
1101 |
9.716667 |
0 |
|
Single Cell |
Comparing inferred cell compositions using MuSiC deconvolution |
T00243 |
gxy.io/GTN:T00243 |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-4-compare/tutorial.html |
|
|
2023-01-20 |
2026-09-23 |
12 |
True |
False |
False |
True |
music_compare |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
|
0 |
|
427 |
583 |
11.600000 |
0 |
|
Single Cell |
Importing files from public atlases |
T00374 |
gxy.io/GTN:T00374 |
https://training.galaxyproject.org//topics/single-cell/tutorials/EBI-retrieval/tutorial.html |
|
|
2023-11-14 |
2026-06-25 |
9 |
True |
False |
True |
True |
anndata_ops, seurat_read10x, hca_matrix_downloader, sceasy_convert, retrieve_scxa, tp_grep_tool, regexColumn1, tp_find_and_replace, scanpy_read_10x |
|
|
0 |
|
791 |
990 |
12.433333 |
0 |
|
Single Cell |
Removing the effects of the cell cycle |
T00248 |
gxy.io/GTN:T00248 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_cell-cycle/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2023-01-25 |
2026-09-23 |
17 |
True |
False |
False |
True |
scanpy_cluster_reduce_dimension, scanpy_plot, anndata_inspect, table_compute, cat1, tp_easyjoin_tool, scanpy_inspect, addValue, scanpy_regress_variable, sort1, anndata_manipulate |
|
|
0 |
|
2544 |
2962 |
3.083333 |
0 |
|
Single Cell |
Combining single cell datasets after pre-processing |
T00246 |
gxy.io/GTN:T00246 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial.html |
|
|
2022-09-08 |
2026-09-23 |
24 |
True |
False |
True |
True |
Cut1, Paste1, anndata_inspect, anndata_ops, tp_replace_in_column, anndata_manipulate |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy Switzerland |
0 |
|
2878 |
3965 |
11.316667 |
0 |
|
Single Cell |
Understanding Barcodes |
T00256 |
gxy.io/GTN:T00256 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-umis/tutorial.html |
|
Sequencing quality control, Statistical calculation, Sequence composition calculation |
2019-02-20 |
2026-09-23 |
13 |
True |
False |
True |
True |
umi_tools_extract, seq_filter_by_id, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
7253 |
8970 |
5.466667 |
0 |
|
Single Cell |
Clustering 3K PBMCs with Scanpy |
T00254 |
gxy.io/GTN:T00254 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scanpy-pbmc3k/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2019-12-19 |
2026-09-23 |
19 |
True |
True |
True |
True |
scanpy_cluster_reduce_dimension, scanpy_plot, anndata_inspect, scanpy_normalize, scanpy_remove_confounders, scanpy_inspect, anndata_import, celltypist, anndata_manipulate, datamash_ops, scanpy_filter |
Galaxy Europe |
Galaxy Canada |
0 |
|
4355977 |
9941285 |
8.283333 |
0 |
|
Single Cell |
Downstream Single-cell RNA analysis with RaceID |
T00253 |
gxy.io/GTN:T00253 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-raceid/tutorial.html |
|
Expression profile clustering, Molecular dynamics, Expression analysis |
2019-03-25 |
2025-02-14 |
7 |
True |
False |
False |
True |
raceid_inspecttrajectory, datamash_transpose, raceid_clustering, tp_sed_tool, raceid_trajectory, tp_head_tool, raceid_inspectclusters, raceid_filtnormconf, datamash_ops |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium, Galaxy Norway |
Galaxy Australia, Galaxy Canada |
0 |
|
1291 |
1510 |
7.633333 |
0 |
|
Single Cell |
Filter, plot, and explore single cell RNA-seq data with Seurat (R) |
T00366 |
gxy.io/GTN:T00366 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio/tutorial.html |
|
|
2023-10-02 |
2025-03-11 |
11 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4079 |
4603 |
3.350000 |
0 |
|
Single Cell |
Single-cell ATAC-seq standard processing with SnapATAC2 |
T00445 |
gxy.io/GTN:T00445 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-standard-processing-snapatac2/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Generation, Gene expression profiling, Read mapping, Dimensionality reduction, Essential dynamics, Sequence alignment, Principal component visualisation, Genome indexing |
2024-07-11 |
2026-09-28 |
7 |
True |
False |
False |
True |
Cut1, snapatac2_peaks_and_motif, fasta_compute_length, bwa_mem, scanpy_plot, anndata_inspect, scanpy_normalize, snapatac2_preprocessing, scanpy_inspect, replace_column_with_key_value_file, anndata_manipulate, scanpy_filter, snapatac2_plotting, snapatac2_clustering |
|
|
0 |
|
2580 |
2992 |
4.066667 |
0 |
|
Single Cell |
Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) |
T00358 |
gxy.io/GTN:T00358 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-jupyter_basic-pipeline/tutorial.html |
|
|
2023-08-25 |
2026-09-23 |
14 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4055 |
4794 |
4.700000 |
0 |
|
Single Cell |
Filter, plot, and explore single cell RNA-seq data with Seurat |
T00438 |
gxy.io/GTN:T00438 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExplore_SeuratTools/tutorial.html |
|
|
2024-04-09 |
2025-03-11 |
10 |
True |
False |
False |
True |
seurat_read10x, seurat_scale_data, retrieve_scxa, seurat_find_clusters, seurat_run_pca, seurat_find_neighbours, seurat_run_umap, seurat_plot, seurat_find_variable_genes, seurat_normalise_data, seurat_find_markers, seurat_filter_cells |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France |
|
0 |
|
3058 |
3605 |
5.933333 |
0 |
|
Single Cell |
Scanpy Parameter Iterator |
T00357 |
gxy.io/GTN:T00357 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scanpy_parameter_iterator/tutorial.html |
|
|
2023-07-19 |
2026-06-25 |
9 |
True |
False |
False |
True |
scanpy_parameter_iterator, scanpy_compute_graph, scanpy_run_tsne, scanpy_run_umap, scanpy_find_cluster, scanpy_plot_embed |
Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy Switzerland |
0 |
|
433 |
471 |
11.250000 |
0 |
|
Single Cell |
Multi-sample batch correction with Harmony and SnapATAC2 |
T00515 |
gxy.io/GTN:T00515 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-batch-correction-snapatac2/tutorial.html |
|
Dimensionality reduction, Essential dynamics, Gene expression profiling |
2025-02-28 |
2026-09-23 |
3 |
True |
False |
False |
True |
snapatac2_peaks_and_motif, fasta_compute_length, snapatac2_preprocessing, anndata_inspect, __FILTER_FROM_FILE__, collection_element_identifiers, Show beginning1, __EXTRACT_DATASET__, anndata_manipulate, snapatac2_plotting, snapatac2_clustering |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada |
|
0 |
|
899 |
994 |
5.116667 |
0 |
|
Single Cell |
Clustering 3K PBMCs with Seurat |
T00516 |
gxy.io/GTN:T00516 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-seurat-pbmc3k/tutorial.html |
|
|
2025-01-23 |
2026-09-23 |
6 |
True |
False |
True |
True |
Cut1, seurat_data, seurat_preprocessing, csv_to_tabular, seurat_plot, seurat_create, Filter1, seurat_clustering, seurat_reduce_dimension |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
|
0 |
|
3014 |
3624 |
4.900000 |
0 |
|
Single Cell |
Converting NCBI Data to the AnnData Format |
T00380 |
gxy.io/GTN:T00380 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-ncbi-anndata/tutorial.html |
|
|
2023-12-13 |
2026-06-25 |
8 |
True |
False |
True |
True |
Cut1, Paste1, unzip, anndata_inspect, scanpy_filter_cells, anndata_import, anndata_ops, tp_replace_in_column, anndata_manipulate |
Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy Switzerland |
0 |
|
651 |
760 |
14.600000 |
0 |
|
Single Cell |
Filter, plot and explore single-cell RNA-seq data with Scanpy |
T00247 |
gxy.io/GTN:T00247 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2021-03-24 |
2025-04-23 |
24 |
True |
False |
True |
True |
anndata_inspect, scanpy_filter_cells, scanpy_compute_graph, scanpy_inspect, scanpy_run_umap, anndata_ops, scanpy_filter, Cut1, scanpy_scale_data, scanpy_filter_genes, scanpy_run_pca, scanpy_find_markers, anndata_manipulate, interactive_tool_cellxgene_vip, scanpy_plot_embed, scanpy_find_variable_genes, scanpy_plot, scanpy_run_tsne, join1, scanpy_cluster_reduce_dimension, retrieve_scxa, scanpy_normalise_data, scanpy_normalize, scanpy_find_cluster |
|
|
0 |
|
6232 |
9575 |
7.616667 |
0 |
|
Single Cell |
Evaluating Reference Data for Bulk RNA Deconvolution |
T00513 |
gxy.io/GTN:T00513 |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-deconvolution-evaluate/tutorial.html |
|
Visualisation, Annotation |
2025-02-02 |
2026-09-23 |
5 |
True |
False |
False |
True |
datamash_transpose, tp_sed_tool, music_construct_eset, tp_easyjoin_tool, music_deconvolution, tp_cut_tool, tp_multijoin_tool, Cut1, Paste1, Remove beginning1, ggplot2_point, table_compute, __DUPLICATE_FILE_TO_COLLECTION__, join1, ggplot2_violin, Count1, bg_column_arrange_by_header, collection_column_join, collapse_dataset, Add_a_column1, tp_awk_tool, annotatemyids |
Galaxy Europe, Galaxy Main (US), Galaxy Australia |
Galaxy Canada, Galaxy Belgium |
0 |
|
285 |
316 |
15.750000 |
0 |
|
Single Cell |
Plates, Batches, and Barcodes |
S00085 |
gxy.io/GTN:S00085 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plates-batches-barcodes/slides.html |
|
|
2019-02-16 |
2025-02-13 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927648 |
2.016667 |
0 |
|
Single Cell |
Inferring single cell trajectories with Scanpy (Python) |
T00244 |
gxy.io/GTN:T00244 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_JUPYTER-trajectories/tutorial.html |
|
|
2021-04-07 |
2025-03-11 |
20 |
True |
False |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
5410 |
6281 |
3.933333 |
0 |
|
Single Cell |
Batch Correction and Integration with Seurat or Scanpy |
T00583 |
gxy.io/GTN:T00583 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna_batch_correction/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2026-07-09 |
2026-09-23 |
2 |
True |
False |
False |
True |
seurat_data, scanpy_cluster_reduce_dimension, scanpy_plot, anndata_inspect, seurat_integrate, scanpy_remove_confounders, seurat_preprocessing, scanpy_inspect, seurat_plot, scanpy_normalize, scanpy_filter, Count1, seurat_clustering, seurat_reduce_dimension |
Galaxy Europe, Galaxy Australia, Galaxy Canada |
Galaxy Main (US) |
0 |
|
212 |
223 |
3.616667 |
0 |
|
Single Cell |
Inferring single cell trajectories with Scanpy |
T00379 |
gxy.io/GTN:T00379 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_trajectories/tutorial.html |
|
|
2023-12-08 |
2026-09-23 |
14 |
True |
False |
False |
True |
scanpy_run_diffmap, scanpy_run_fdg, scanpy_run_paga, scanpy_compute_graph, scanpy_plot_trajectory, anndata_manipulate, scanpy_run_dpt, scanpy_find_cluster, scanpy_plot_embed |
|
Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
0 |
|
1671 |
2054 |
7.516667 |
0 |
|
Single Cell |
Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution |
T00241 |
gxy.io/GTN:T00241 |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-2-preparescref/tutorial.html |
|
Annotation |
2023-01-20 |
2026-06-25 |
9 |
True |
False |
False |
True |
Cut1, add_line_to_file, datamash_transpose, table_compute, anndata_inspect, retrieve_scxa, tp_sed_tool, music_construct_eset, tp_easyjoin_tool, music_manipulate_eset, tp_awk_tool, tp_cut_tool, join1, regex1, sort1, scanpy_read_10x, annotatemyids |
|
Galaxy Canada |
0 |
|
896 |
1404 |
7.650000 |
0 |
|
Single Cell |
Single-cell Formats and Resources |
S00123 |
gxy.io/GTN:S00123 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-formats/slides.html |
|
|
2024-07-26 |
2025-02-13 |
4 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2303751 |
4272420 |
1.566667 |
0 |
|
Single Cell |
Inferring single cell trajectories with Monocle3 (R) |
T00336 |
gxy.io/GTN:T00336 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-rstudio/tutorial.html |
|
|
2023-04-12 |
2025-03-11 |
13 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
7859 |
8840 |
1.633333 |
0 |
|
Single Cell |
Inferring single cell trajectories with Monocle3 |
T00249 |
gxy.io/GTN:T00249 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-trajectories/tutorial.html |
|
|
2022-09-30 |
2026-09-23 |
25 |
True |
False |
True |
True |
Cut1, monocle3_plotCells, datamash_transpose, monocle3_learnGraph, monocle3_partition, anndata_inspect, monocle3_preprocess, tp_cut_tool, monocle3_reduceDim, Filter1, join1, regexColumn1, monocle3_orderCells, monocle3_create, monocle3_topmarkers, monocle3_diffExp |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
|
0 |
|
4588 |
5612 |
4.283333 |
0 |
|
Single Cell |
Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution |
T00242 |
gxy.io/GTN:T00242 |
https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-3-preparebulk/tutorial.html |
|
Annotation |
2023-01-20 |
2026-06-25 |
9 |
True |
False |
False |
True |
table_compute, tp_sed_tool, music_construct_eset, tp_easyjoin_tool, music_manipulate_eset, tp_cut_tool, tp_awk_tool, column_remove_by_header, regex1, sort1, annotatemyids |
|
Galaxy Canada |
0 |
|
931 |
1361 |
10.666667 |
0 |
|
Single Cell |
Trajectory analysis |
S00111 |
gxy.io/GTN:S00111 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-trajectories/slides.html |
|
|
2022-09-30 |
2025-02-13 |
4 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
3382287 |
6841334 |
1.816667 |
0 |
|
Single Cell |
Automated Cell Annotation |
S00110 |
gxy.io/GTN:S00110 |
https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-cell-annotation/slides.html |
|
|
2023-09-04 |
2025-02-27 |
7 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2775635 |
5393326 |
1.716667 |
0 |
|
Single Cell |
Pseudobulk Analysis with Decoupler and EdgeR |
T00514 |
gxy.io/GTN:T00514 |
https://training.galaxyproject.org//topics/single-cell/tutorials/pseudobulk-analysis/tutorial.html |
|
Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2025-02-12 |
2026-09-28 |
10 |
True |
False |
True |
True |
decoupler_pseudobulk, anndata_inspect, __EXTRACT_DATASET__, tp_awk_tool, column_remove_by_header, edger, volcanoplot, anndata_manipulate, scanpy_filter, tp_replace_in_column, tp_replace_in_line |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium |
|
0 |
|
2736 |
3086 |
2.766667 |
0 |
|
Single Cell |
Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium |
T00592 |
gxy.io/GTN:T00592 |
https://training.galaxyproject.org//topics/single-cell/tutorials/spatial-melanoma-SPICA/tutorial.html |
|
Differential gene expression profiling, Differential gene expression analysis, Expression profile clustering, Principal component visualisation |
2026-09-01 |
2026-09-23 |
2 |
True |
False |
False |
True |
spatialdata_plot, scanpy_cluster_reduce_dimension, scanpy_plot, anndata_inspect, scanpy_normalize, squidpy_graph, spatialdata_io, scanpy_inspect, celltypist, squidpy_plot, spatialdata_operation, liana_methods, anndata_manipulate, datamash_ops, scanpy_filter, Filter1 |
Galaxy Europe |
|
0 |
|
115 |
155 |
4.000000 |
0 |
|
Single Cell |
GO Enrichment Analysis on Single-Cell RNA-Seq Data |
T00456 |
gxy.io/GTN:T00456 |
https://training.galaxyproject.org//topics/single-cell/tutorials/GO-enrichment/tutorial.html |
|
Gene-set enrichment analysis |
2024-09-17 |
2026-09-23 |
10 |
True |
True |
False |
True |
Cut1, tp_split_on_column, gprofiler_gost, goenrichment |
Galaxy Europe, Galaxy Main (US), Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
2233263 |
4102185 |
5.616667 |
0 |
|
Statistics and Machine Learning |
Machine learning: classification and regression |
T00263 |
gxy.io/GTN:T00263 |
https://training.galaxyproject.org//topics/statistics/tutorials/classification_regression/tutorial.html |
|
|
2019-03-07 |
2026-09-23 |
14 |
True |
False |
False |
True |
sklearn_svm_classifier, sklearn_ensemble, plotly_ml_performance_plots, plotly_regression_performance_plots |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy Switzerland, Galaxy Canada |
0 |
|
5961 |
10523 |
2.950000 |
0 |
|
Statistics and Machine Learning |
Clustering in Machine Learning |
T00264 |
gxy.io/GTN:T00264 |
https://training.galaxyproject.org//topics/statistics/tutorials/clustering_machinelearning/tutorial.html |
|
Visualisation |
2020-05-08 |
2026-09-23 |
15 |
True |
False |
False |
True |
ggplot2_point, sklearn_numeric_clustering, csv_to_tabular |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
8969 |
14579 |
2.700000 |
0 |
|
Statistics and Machine Learning |
Deep Learning (Part 2) - Recurrent neural networks (RNN) |
T00259 |
gxy.io/GTN:T00259 |
https://training.galaxyproject.org//topics/statistics/tutorials/RNN/tutorial.html |
|
|
2021-02-23 |
2026-09-23 |
16 |
True |
True |
True |
True |
ml_visualization_ex, model_prediction, keras_model_builder, keras_train_and_eval, keras_model_config |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Norway |
0 |
|
4277700 |
9677754 |
5.283333 |
0 |
|
Statistics and Machine Learning |
Deep Learning (Part 1) - Feedforward neural networks (FNN) |
T00258 |
gxy.io/GTN:T00258 |
https://training.galaxyproject.org//topics/statistics/tutorials/FNN/tutorial.html |
|
|
2021-04-28 |
2026-09-23 |
14 |
True |
True |
True |
True |
plotly_regression_performance_plots, model_prediction, keras_model_builder, keras_train_and_eval, keras_model_config |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Norway |
0 |
|
4201083 |
9386185 |
3.416667 |
0 |
|
Statistics and Machine Learning |
Modeling Breast Cancer Subtypes with Flexynesis |
T00554 |
gxy.io/GTN:T00554 |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_classification/tutorial.html |
|
|
2025-08-13 |
2026-09-23 |
8 |
True |
False |
True |
True |
datamash_transpose, table_compute, Show beginning1, tp_easyjoin_tool, flexynesis, __EXTRACT_DATASET__, flexynesis_plot, tp_cut_tool, tp_sort_header_tool, join1, tabpfn |
Galaxy Europe, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
385 |
505 |
21.666667 |
0 |
|
Statistics and Machine Learning |
Prepare Data from CbioPortal for Flexynesis Integration |
T00553 |
gxy.io/GTN:T00553 |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_cbio_import/tutorial.html |
|
|
2025-08-10 |
2026-09-23 |
3 |
True |
False |
False |
True |
table_compute, tp_sort_header_tool, flexynesis_cbioportal_import, __EXTRACT_DATASET__, tp_cut_tool, flexynesis_utils |
Galaxy Europe |
Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
0 |
|
179 |
195 |
7.316667 |
0 |
|
Statistics and Machine Learning |
GTEx Tissue Modeling with Galaxy Image Learner |
T00588 |
gxy.io/GTN:T00588 |
https://training.galaxyproject.org//topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.html |
|
|
2026-07-24 |
2026-07-24 |
1 |
True |
True |
False |
True |
image_learner |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
|
0 |
|
345799 |
587127 |
18.750000 |
0 |
|
Statistics and Machine Learning |
Classification in Machine Learning |
T00262 |
gxy.io/GTN:T00262 |
https://training.galaxyproject.org//topics/statistics/tutorials/classification_machinelearning/tutorial.html |
|
|
2020-04-30 |
2026-09-23 |
19 |
True |
True |
True |
True |
sklearn_generalized_linear, sklearn_svm_classifier, sklearn_nn_classifier, Remove beginning1, sklearn_searchcv, plotly_ml_performance_plots, sklearn_build_pipeline, sklearn_ensemble |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy Switzerland, Galaxy Norway |
0 |
|
4349351 |
9932189 |
11.133333 |
0 |
|
Statistics and Machine Learning |
Image classification in Galaxy with fruit 360 dataset |
T00265 |
gxy.io/GTN:T00265 |
https://training.galaxyproject.org//topics/statistics/tutorials/fruit_360/tutorial.html |
|
|
2021-12-01 |
2026-09-23 |
9 |
True |
True |
True |
True |
ml_visualization_ex, tp_cut_tool, model_prediction, keras_model_builder, keras_train_and_eval, sklearn_to_categorical, keras_model_config |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
3856508 |
8299121 |
5.783333 |
0 |
|
Statistics and Machine Learning |
PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis |
T00260 |
gxy.io/GTN:T00260 |
https://training.galaxyproject.org//topics/statistics/tutorials/aberrant_pi3k_pathway_analysis/tutorial.html |
|
|
2021-05-06 |
2026-09-23 |
8 |
True |
False |
False |
True |
pancancer_map_mutation_class, pancancer_visualize_decisions, pancancer_targene_pharmacology, pancancer_compare_within_models, pancancer_targene_summary_figures, pancancer_alternative_genes_pathwaymapper, pancancer_within_disease_analysis, pancancer_classifier, pancancer_apply_weights, pancancer_external_sample_status_prediction, pancancer_targene_cell_line_predictions, pancancer_pathway_count_heatmaps |
|
|
0 |
|
972 |
1422 |
10.416667 |
0 |
|
Statistics and Machine Learning |
GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000 |
T00570 |
gxy.io/GTN:T00570 |
https://training.galaxyproject.org//topics/statistics/tutorials/image_learner/tutorial.html |
|
|
2026-01-28 |
2026-09-23 |
5 |
True |
True |
True |
True |
image_learner |
Galaxy Europe, Galaxy Main (US), Galaxy Switzerland |
|
0 |
|
1053989 |
1711177 |
17.783333 |
0 |
|
Statistics and Machine Learning |
Unsupervised Analysis of Bone Marrow Cells with Flexynesis |
T00556 |
gxy.io/GTN:T00556 |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_unsupervised/tutorial.html |
|
|
2025-08-10 |
2026-09-23 |
3 |
True |
False |
False |
True |
flexynesis_utils, flexynesis, __EXTRACT_DATASET__, flexynesis_plot |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada |
0 |
|
141 |
154 |
30.316667 |
0 |
|
Statistics and Machine Learning |
Regression in Machine Learning |
T00271 |
gxy.io/GTN:T00271 |
https://training.galaxyproject.org//topics/statistics/tutorials/regression_machinelearning/tutorial.html |
|
|
2020-01-25 |
2026-09-23 |
21 |
True |
True |
True |
True |
sklearn_generalized_linear, Remove beginning1, plotly_regression_performance_plots, sklearn_searchcv, sklearn_build_pipeline, sklearn_ensemble |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
4349801 |
9932208 |
7.716667 |
0 |
|
Statistics and Machine Learning |
Introduction to deep learning |
T00268 |
gxy.io/GTN:T00268 |
https://training.galaxyproject.org//topics/statistics/tutorials/intro_deep_learning/tutorial.html |
|
|
2020-03-26 |
2026-09-23 |
10 |
True |
False |
False |
True |
ml_visualization_ex, model_prediction, keras_model_builder, keras_train_and_eval, keras_model_config |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway |
Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
2726 |
3431 |
7.200000 |
0 |
|
Statistics and Machine Learning |
Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK |
T00576 |
gxy.io/GTN:T00576 |
https://training.galaxyproject.org//topics/statistics/tutorials/multimodal_learner/tutorial.html |
|
|
2026-03-25 |
2026-09-23 |
5 |
True |
True |
True |
True |
multimodal_learner |
Galaxy Main (US) |
Galaxy Europe, Galaxy Switzerland |
0 |
|
754966 |
1289224 |
10.183333 |
0 |
|
Statistics and Machine Learning |
Deep Learning (Part 3) - Convolutional neural networks (CNN) |
T00257 |
gxy.io/GTN:T00257 |
https://training.galaxyproject.org//topics/statistics/tutorials/CNN/tutorial.html |
|
|
2021-04-19 |
2026-09-23 |
21 |
True |
True |
True |
True |
ml_visualization_ex, model_prediction, keras_model_builder, keras_train_and_eval, sklearn_to_categorical, keras_model_config |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium |
Galaxy France, Galaxy Switzerland |
0 |
|
4196352 |
9396940 |
4.066667 |
0 |
|
Statistics and Machine Learning |
Comparing ligand-binding site predictions across different protein structure modalities using SIMORGH |
T00594 |
gxy.io/GTN:T00594 |
https://training.galaxyproject.org//topics/statistics/tutorials/simorgh/tutorial.html |
|
Protein property calculation, Protein structure prediction, Protein structure analysis, Fold recognition, Database search |
2026-09-24 |
2026-09-24 |
1 |
True |
False |
False |
True |
get_pdb, tp_text_file_with_recurring_lines, pdbfixer, colabfold_msa, __EXTRACT_DATASET__, tp_awk_tool, simorgh, colabfold_alphafold, compose_text_param, tp_replace_in_line |
Galaxy Europe |
|
0 |
|
21 |
28 |
1.400000 |
0 |
|
Statistics and Machine Learning |
Galaxy Tabular Learner - Building a Model using Chowell clinical data |
T00525 |
gxy.io/GTN:T00525 |
https://training.galaxyproject.org//topics/statistics/tutorials/loris_model/tutorial.html |
|
|
2024-12-13 |
2026-09-23 |
5 |
True |
True |
True |
True |
tabular_learner, PyCaret_Model_Comparison |
|
|
0 |
|
2092169 |
3732249 |
15.350000 |
0 |
|
Statistics and Machine Learning |
A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy |
T00266 |
gxy.io/GTN:T00266 |
https://training.galaxyproject.org//topics/statistics/tutorials/gpu_jupyter_lab/tutorial.html |
|
|
2022-04-06 |
2026-09-23 |
10 |
True |
False |
False |
True |
Cut1, interactive_tool_ml_jupyter_notebook, Filter1 |
Galaxy Europe |
|
0 |
|
1433 |
1765 |
8.266667 |
0 |
|
Statistics and Machine Learning |
Interval-Wise Testing for omics data |
T00269 |
gxy.io/GTN:T00269 |
https://training.galaxyproject.org//topics/statistics/tutorials/iwtomics/tutorial.html |
|
Differential gene expression analysis, Peak calling, Comparison, Genome annotation, Differentially-methylated region identification |
2018-06-14 |
2026-09-23 |
18 |
True |
False |
False |
True |
iwtomics_testandplot, iwtomics_plotwithscale, iwtomics_loadandplot |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
464 |
587 |
14.633333 |
0 |
|
Statistics and Machine Learning |
Basics of machine learning |
T00270 |
gxy.io/GTN:T00270 |
https://training.galaxyproject.org//topics/statistics/tutorials/machinelearning/tutorial.html |
|
|
2018-11-05 |
2026-09-23 |
17 |
True |
True |
True |
True |
sklearn_svm_classifier |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
4349497 |
9932126 |
12.866667 |
0 |
|
Statistics and Machine Learning |
Train and Test a Deep learning image classifier with Galaxy-Ludwig |
T00467 |
gxy.io/GTN:T00467 |
https://training.galaxyproject.org//topics/statistics/tutorials/galaxy-ludwig/tutorial.html |
|
|
2024-10-28 |
2024-12-11 |
2 |
True |
False |
False |
True |
ludwig_experiment |
|
|
0 |
|
360 |
425 |
12.533333 |
0 |
|
Statistics and Machine Learning |
Identifing Survival Markers of Brain tumor with Flexynesis |
T00555 |
gxy.io/GTN:T00555 |
https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_survival/tutorial.html |
|
|
2025-08-13 |
2026-09-23 |
3 |
True |
False |
False |
True |
Add_a_column1, flexynesis, __EXTRACT_DATASET__, flexynesis_plot, datamash_ops, tp_replace_in_column |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada |
0 |
|
258 |
319 |
17.400000 |
0 |
|
Statistics and Machine Learning |
Text-mining with the SimText toolset |
T00272 |
gxy.io/GTN:T00272 |
https://training.galaxyproject.org//topics/statistics/tutorials/text-mining_simtext/tutorial.html |
|
|
2021-04-05 |
2026-09-23 |
9 |
True |
False |
False |
True |
interactive_tool_simtext_app, pmids_to_pubtator_matrix, pubmed_by_queries |
Galaxy Europe |
|
0 |
|
611 |
808 |
14.333333 |
0 |
|
Statistics and Machine Learning |
Age prediction using machine learning |
T00261 |
gxy.io/GTN:T00261 |
https://training.galaxyproject.org//topics/statistics/tutorials/age-prediction-with-ml/tutorial.html |
|
|
2019-01-25 |
2026-09-23 |
13 |
True |
False |
False |
True |
plotly_regression_performance_plots, sklearn_searchcv, sklearn_build_pipeline, plotly_parallel_coordinates_plot, sklearn_ensemble |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
13659 |
21851 |
2.183333 |
0 |
|
Statistics and Machine Learning |
Fine tune large protein model (ProtTrans) using HuggingFace |
T00442 |
gxy.io/GTN:T00442 |
https://training.galaxyproject.org//topics/statistics/tutorials/fine_tuning_protTrans/tutorial.html |
|
|
2024-06-17 |
2026-09-23 |
5 |
True |
True |
True |
False |
interactive_tool_ml_jupyter_notebook |
Galaxy Europe |
|
0 |
|
2361611 |
4415010 |
6.333333 |
0 |
|
Statistics and Machine Learning |
Introduction to Machine Learning using R |
T00267 |
gxy.io/GTN:T00267 |
https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-r/tutorial.html |
|
|
2021-05-21 |
2024-10-15 |
15 |
True |
False |
True |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
5020 |
7696 |
5.000000 |
0 |
|
Statistics and Machine Learning |
Supervised Learning with Hyperdimensional Computing |
T00337 |
gxy.io/GTN:T00337 |
https://training.galaxyproject.org//topics/statistics/tutorials/hyperdimensional_computing/tutorial.html |
|
|
2023-04-28 |
2026-09-23 |
3 |
True |
False |
False |
False |
chopin2 |
Galaxy Main (US) |
Galaxy Europe, Galaxy Switzerland, Galaxy Canada |
0 |
|
603 |
714 |
8.800000 |
0 |
|
Synthetic Biology |
Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools |
T00275 |
gxy.io/GTN:T00275 |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/retrosynthesis_analysis/tutorial.html |
|
|
2022-06-23 |
2024-06-14 |
8 |
True |
False |
True |
True |
get_sbml_model, retropath2, rpextractsink, rrparser, rpcompletion, rp2paths |
Galaxy Belgium |
Galaxy France |
0 |
|
787 |
1073 |
13.800000 |
0 |
|
Synthetic Biology |
Designing plasmids encoding predicted pathways by using the BASIC assembly method |
T00273 |
gxy.io/GTN:T00273 |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/basic_assembly_analysis/tutorial.html |
|
|
2022-05-12 |
2026-09-23 |
9 |
True |
False |
True |
True |
selenzy-wrapper, dnabot, rpbasicdesign |
Galaxy Belgium |
Galaxy France |
0 |
|
1241 |
1833 |
13.000000 |
0 |
|
Synthetic Biology |
Evaluating and ranking a set of pathways based on multiple metrics |
T00274 |
gxy.io/GTN:T00274 |
https://training.galaxyproject.org//topics/synthetic-biology/tutorials/pathway_analysis/tutorial.html |
|
|
2022-09-26 |
2026-09-23 |
8 |
True |
False |
True |
True |
rpfba, rpscore, rpthermo, rpranker |
Galaxy Belgium |
|
0 |
|
790 |
1106 |
9.933333 |
0 |
|
Teaching and Hosting Galaxy Training |
Workshop Kickoff |
S00093 |
gxy.io/GTN:S00093 |
https://training.galaxyproject.org//topics/teaching/tutorials/workshop-intro/slides.html |
|
|
2019-06-04 |
2024-02-20 |
5 |
False |
True |
False |
False |
|
|
|
0 |
|
4346173 |
9927650 |
2.016667 |
0 |
|
Teaching and Hosting Galaxy Training |
Overview of the Galaxy Training Material for Instructors |
S00092 |
gxy.io/GTN:S00092 |
https://training.galaxyproject.org//topics/teaching/tutorials/gtn-for-instructors/slides.html |
|
|
2022-09-23 |
2024-08-08 |
3 |
False |
True |
True |
False |
|
|
|
0 |
|
3392861 |
6868366 |
1.833333 |
0 |
|
Teaching and Hosting Galaxy Training |
Asynchronous training |
T00371 |
gxy.io/GTN:T00371 |
https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-async/tutorial.html |
|
|
2023-11-02 |
2023-11-02 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
60 |
60 |
81.900000 |
0 |
|
Teaching and Hosting Galaxy Training |
Live Coding is a Skill |
T00281 |
gxy.io/GTN:T00281 |
https://training.galaxyproject.org//topics/teaching/tutorials/live-coding/tutorial.html |
|
|
2022-09-23 |
2023-11-09 |
6 |
True |
False |
False |
False |
|
|
|
0 |
|
162 |
166 |
19.916667 |
0 |
|
Teaching and Hosting Galaxy Training |
Teaching online |
T00287 |
gxy.io/GTN:T00287 |
https://training.galaxyproject.org//topics/teaching/tutorials/teaching-online/tutorial.html |
|
|
2022-09-23 |
2023-10-23 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
69 |
69 |
16.283333 |
0 |
|
Teaching and Hosting Galaxy Training |
Course Builder |
T00372 |
gxy.io/GTN:T00372 |
https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-coursebuilder/tutorial.html |
|
|
2023-11-02 |
2023-11-02 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
229 |
256 |
16.650000 |
0 |
|
Teaching and Hosting Galaxy Training |
Hybrid training |
T00279 |
gxy.io/GTN:T00279 |
https://training.galaxyproject.org//topics/teaching/tutorials/hybrid-training/tutorial.html |
|
|
2022-09-23 |
2024-06-25 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
70 |
72 |
16.583333 |
0 |
|
Teaching and Hosting Galaxy Training |
Teaching experiences |
T00277 |
gxy.io/GTN:T00277 |
https://training.galaxyproject.org//topics/teaching/tutorials/experiences/tutorial.html |
|
|
2022-09-23 |
2022-09-23 |
1 |
True |
False |
False |
False |
|
|
|
0 |
|
433 |
671 |
18.300000 |
0 |
|
Teaching and Hosting Galaxy Training |
Running a workshop as an instructor |
T00284 |
gxy.io/GTN:T00284 |
https://training.galaxyproject.org//topics/teaching/tutorials/running-workshop/tutorial.html |
|
|
2018-11-15 |
2025-12-18 |
7 |
True |
False |
False |
False |
|
|
|
0 |
|
297 |
429 |
21.983333 |
0 |
|
Teaching and Hosting Galaxy Training |
Training Infrastructure as a Service |
T00286 |
gxy.io/GTN:T00286 |
https://training.galaxyproject.org//topics/teaching/tutorials/setup-tiaas-for-training/tutorial.html |
|
|
2018-11-15 |
2023-12-20 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
378 |
580 |
20.666667 |
0 |
|
Teaching and Hosting Galaxy Training |
Organizing a workshop |
T00283 |
gxy.io/GTN:T00283 |
https://training.galaxyproject.org//topics/teaching/tutorials/organize-workshop/tutorial.html |
|
|
2018-11-15 |
2023-11-09 |
4 |
True |
False |
False |
False |
|
|
|
0 |
|
398 |
427 |
20.716667 |
0 |
|
Teaching and Hosting Galaxy Training |
Set up a Galaxy for Training |
T00285 |
gxy.io/GTN:T00285 |
https://training.galaxyproject.org//topics/teaching/tutorials/setup-galaxy-for-training/tutorial.html |
|
|
2018-06-04 |
2023-11-09 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
489 |
540 |
15.400000 |
0 |
|
Teaching and Hosting Galaxy Training |
Galaxy Admin Training |
T00278 |
gxy.io/GTN:T00278 |
https://training.galaxyproject.org//topics/teaching/tutorials/galaxy-admin-training/tutorial.html |
|
|
2020-11-04 |
2024-09-17 |
5 |
True |
False |
False |
False |
|
|
|
0 |
|
239 |
261 |
21.900000 |
0 |
|
Transcriptomics |
Introduction to Transcriptomics |
S00094 |
gxy.io/GTN:S00094 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/introduction/slides.html |
|
|
2016-10-05 |
2025-04-08 |
3 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927651 |
2.016667 |
0 |
|
Transcriptomics |
Reference-based RNA-Seq data analysis |
T00295 |
gxy.io/GTN:T00295 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/ref-based/tutorial.html |
|
Validation, Enrichment analysis, Read mapping, RNA-Seq quantification, Data handling, Formatting, Pathway or network analysis, Read pre-processing, Sequence trimming, Read summarisation, Visualisation, Differential gene expression analysis, Sequencing quality control, Gene functional annotation, Pathway or network visualisation, Primer removal, Pathway visualisation, Genome visualisation, Exonic splicing enhancer prediction, Structure visualisation, Sequence alignment, RNA-Seq analysis |
2016-10-05 |
2026-09-23 |
111 |
True |
False |
True |
True |
ggplot2_heatmap2, rseqc_read_distribution, __TAG_FROM_FILE__, deseq2, __EXTRACT_DATASET__, rseqc_geneBody_coverage, dexseq_count, Cut1, __MERGE_COLLECTION__, samtools_view, goseq, ChangeCase, Remove beginning1, tp_grep_tool, dexseq, length_and_gc_content, multiqc, rseqc_infer_experiment, rna_star, pygenomeTracks, samtools_idxstats, table_compute, falco, __FILTER_FROM_FILE__, collection_element_identifiers, cat1, join1, tp_cat, __FLATTEN__, pathview, cutadapt, Grouping1, picard_MarkDuplicates, jbrowse2, Add_a_column1, featurecounts, tp_sort_header_tool, gtftobed12, deg_annotate, Filter1, tp_replace_in_line |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Australia, Galaxy Switzerland, Galaxy Canada |
0 |
|
217687 |
392035 |
4.366667 |
0 |
|
Transcriptomics |
Pathway analysis with the MINERVA Platform |
T00437 |
gxy.io/GTN:T00437 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/minerva-pathways/tutorial.html |
|
Primer removal, Sequencing quality control, Gene functional annotation, Validation, RNA-Seq quantification, Data handling, Read summarisation, Statistical calculation, Read pre-processing, Sequence trimming, Sequence alignment, RNA-Seq analysis, Annotation, Sequence composition calculation |
2024-03-28 |
2026-09-23 |
4 |
True |
False |
False |
True |
fasterq_dump, limma_voom, tp_sorted_uniq, __EXTRACT_DATASET__, rseqc_geneBody_coverage, Cut1, goseq, multiqc, Grep1, hisat2, join1, cutadapt, collection_column_join, Add_a_column1, featurecounts, tp_sort_header_tool, rseqc_read_distribution, annotatemyids, tp_replace_in_line, fastqc |
Galaxy Europe, Galaxy Australia, Galaxy Belgium |
Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
892 |
1028 |
14.150000 |
0 |
|
Transcriptomics |
De novo transcriptome reconstruction with RNA-Seq |
T00289 |
gxy.io/GTN:T00289 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/de-novo/tutorial.html |
|
Differential gene expression analysis, Sequencing quality control, Sequence alignment, Transcriptome assembly, RNA-Seq quantification, Sequence annotation, Statistical calculation, Read summarisation, RNA-Seq analysis, Sequence composition calculation |
2017-02-19 |
2026-09-23 |
37 |
True |
False |
True |
True |
trimmomatic, hisat2, deseq2, featurecounts, stringtie, stringtie_merge, gffcompare, deeptools_bam_coverage, Filter1, fastqc |
Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
18178 |
30571 |
6.733333 |
0 |
|
Transcriptomics |
Small Non-coding RNA Clustering using BlockClust |
T00306 |
gxy.io/GTN:T00306 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/small_ncrna_clustering/tutorial.html |
|
|
2018-12-14 |
2026-09-23 |
9 |
True |
False |
False |
True |
blockclust, samtools_sort, blockbuster, tp_sort_header_tool |
Galaxy Europe, Galaxy Main (US), Galaxy Belgium |
Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
1182 |
1570 |
14.300000 |
0 |
|
Transcriptomics |
Differential abundance testing of small RNAs |
T00307 |
gxy.io/GTN:T00307 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/srna/tutorial.html |
|
Primer removal, Differential gene expression analysis, Sequencing quality control, RNA-Seq quantification, Gene expression analysis, Statistical calculation, Read pre-processing, Sequence trimming, Sequence alignment, RNA-Seq analysis, Sequence composition calculation |
2017-06-29 |
2026-09-23 |
27 |
True |
False |
False |
True |
salmon, samtool_filter2, trim_galore, hisat2, deseq2, bedtools_bamtofastq, fastq_manipulation, Filter1, fastqc |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
7569 |
12899 |
5.566667 |
0 |
|
Transcriptomics |
De novo transcriptome assembly, annotation, and differential expression analysis |
T00290 |
gxy.io/GTN:T00290 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/full-de-novo/tutorial.html |
|
Sequencing quality control, Validation, Gene functional annotation, Transcriptome assembly, Coding region prediction, Statistical calculation, de Novo sequencing, De-novo assembly, Sequence composition calculation |
2020-02-13 |
2023-11-09 |
8 |
True |
False |
False |
True |
trinity_define_clusters_by_cutting_tree, trinity_align_and_estimate_abundance, trinity_filter_low_expr_transcripts, trinity, describe_samples, trimmomatic, transdecoder, trinity_abundance_estimates_to_matrix, trinity_samples_qccheck, trinity_run_de_analysis, multiqc, trinity_contig_exn50_statistic, trinity_analyze_diff_expr, trinotate, fastqc |
Galaxy Europe |
Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
16038 |
28200 |
4.133333 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with Volcano Plot |
T00304 |
gxy.io/GTN:T00304 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html |
|
|
2018-12-31 |
2026-09-23 |
17 |
True |
False |
True |
True |
volcanoplot |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
163828 |
263415 |
2.100000 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with heatmap2 |
T00303 |
gxy.io/GTN:T00303 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-heatmap2/tutorial.html |
|
|
2018-12-31 |
2026-09-23 |
16 |
True |
False |
False |
True |
Cut1, Show tail1, datamash_transpose, ggplot2_heatmap2, cat1, Show beginning1, tp_sort_header_tool, join1, Filter1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium |
Galaxy Canada, Galaxy Norway |
0 |
|
81089 |
131706 |
2.666667 |
0 |
|
Transcriptomics |
CLIP-Seq data analysis from pre-processing to motif detection |
T00288 |
gxy.io/GTN:T00288 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/clipseq/tutorial.html |
|
Primer removal, Sequencing quality control, Statistical calculation, Mapping, Read pre-processing, Sequence trimming, Sequence alignment, Sequence composition calculation |
2018-08-17 |
2026-09-23 |
24 |
True |
False |
False |
True |
deeptools_plot_fingerprint, __MERGE_COLLECTION__, bctools_extract_alignment_ends, __SORTLIST__, rna_star, wig_to_bigWig, meme_chip, deeptools_plot_correlation, umi_tools_dedup, sort1, bedtools_slopbed, cutadapt, umi_tools_extract, tp_awk_tool, bedtools_genomecoveragebed_bedgraph, Extract genomic DNA 1, peakachu, deeptools_multi_bam_summary, rcas, fastqc |
|
|
0 |
|
9154 |
17312 |
3.616667 |
0 |
|
Transcriptomics |
RNA-RNA interactome data analysis |
T00296 |
gxy.io/GTN:T00296 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-interactome/tutorial.html |
|
Primer removal, Sequencing quality control, Statistical calculation, Read pre-processing, Sequence trimming, Sequence composition calculation |
2020-03-23 |
2026-09-23 |
13 |
True |
False |
False |
True |
cutadapt, chira_merge, chira_quantify, chira_map, chira_collapse, query_tabular, chira_extract, fastqc |
Galaxy Main (US), Galaxy Belgium, Galaxy Norway |
Galaxy Europe, Galaxy Australia, Galaxy Canada |
0 |
|
1689 |
2454 |
12.333333 |
0 |
|
Transcriptomics |
GO Enrichment Analysis |
T00291 |
gxy.io/GTN:T00291 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/goenrichment/tutorial.html |
|
Gene-set enrichment analysis |
2019-01-23 |
2026-09-23 |
13 |
True |
False |
False |
True |
goenrichment, Filter1, goslimmer |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
|
0 |
|
24456 |
39041 |
3.400000 |
0 |
|
Transcriptomics |
RNA-Seq data analysis, clustering and visualisation tutorial |
T00547 |
gxy.io/GTN:T00547 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-clustering-viz/tutorial.html |
|
Differential gene expression analysis, Gene functional annotation, RNA-Seq analysis |
2025-05-28 |
2026-06-08 |
9 |
True |
False |
False |
True |
Cut1, goseq, Grouping1, ggplot2_heatmap2, table_compute, Add_a_column1, Multivariate, deseq2, cat1, Show beginning1, tp_easyjoin_tool, tp_sort_header_tool, length_and_gc_content, volcanoplot, deg_annotate, Filter1 |
Galaxy Europe, Galaxy France, Galaxy Belgium |
Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
3454 |
4064 |
3.766667 |
0 |
|
Transcriptomics |
Genome-wide alternative splicing analysis |
T00345 |
gxy.io/GTN:T00345 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.html |
|
Sequence contamination filtering, Sequencing quality control, Validation, Transcriptome assembly, Sequence assembly validation, Sequence annotation, Data handling, Formatting, Statistical calculation, De-novo assembly, Sequence comparison, Sequence alignment, RNA-Seq analysis, Protein sequence analysis, Sequence analysis, Visualisation, Sequence composition calculation |
2023-05-17 |
2026-09-23 |
14 |
True |
True |
False |
True |
gffread, addValue, fastp, regex1, rseqc_geneBody_coverage, rseqc_junction_annotation, Cut1, Remove beginning1, tp_grep_tool, multiqc, stringtie_merge, tp_uniq_tool, rna_star, rseqc_infer_experiment, pygenomeTracks, __FILTER_FROM_FILE__, collection_element_identifiers, cat1, rna_quast, cpat, sort1, tp_cat, __FLATTEN__, isoformswitchanalyzer, rseqc_junction_saturation, gene2exon1, Add_a_column1, tp_awk_tool, stringtie, pfamscan, gffcompare, rseqc_inner_distance, gtftobed12, Filter1, rseqc_read_distribution, fastqc |
|
Galaxy France, Galaxy Canada |
0 |
|
2983001 |
5836324 |
7.200000 |
0 |
|
Transcriptomics |
Network analysis with Heinz |
T00293 |
gxy.io/GTN:T00293 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/network-analysis-with-heinz/tutorial.html |
|
Differential gene expression analysis, Pathway or network analysis, RNA-Seq analysis |
2018-10-11 |
2026-09-23 |
17 |
True |
True |
False |
True |
Cut1, heinz, deseq2, heinz_bum, heinz_scoring, heinz_visualization |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
4348438 |
9931075 |
12.266667 |
0 |
|
Transcriptomics |
2: RNA-seq counts to genes |
T00298 |
gxy.io/GTN:T00298 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.html |
|
RNA-Seq analysis, Annotation |
2018-12-31 |
2026-09-23 |
22 |
True |
False |
False |
True |
mergeCols1, limma_voom, tp_cut_tool, annotatemyids, tp_replace_in_line |
Galaxy Europe, Galaxy Switzerland, Galaxy Belgium |
Galaxy Australia, Galaxy France, Galaxy Canada |
0 |
|
52121 |
83869 |
5.683333 |
0 |
|
Transcriptomics |
1: RNA-Seq reads to counts |
T00301 |
gxy.io/GTN:T00301 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.html |
|
Primer removal, Sequencing quality control, Validation, Sequence alignment, RNA-Seq quantification, Data handling, Formatting, Statistical calculation, Read pre-processing, Sequence trimming, Read summarisation, Sequence composition calculation |
2018-09-23 |
2026-09-23 |
35 |
True |
False |
False |
True |
samtools_idxstats, cutadapt, picard_MarkDuplicates, collection_column_join, hisat2, featurecounts, multiqc, rseqc_infer_experiment, rseqc_geneBody_coverage, rseqc_read_distribution, fastqc |
Galaxy Europe |
Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway |
0 |
|
85832 |
152499 |
5.283333 |
0 |
|
Transcriptomics |
3: RNA-seq genes to pathways |
T00300 |
gxy.io/GTN:T00300 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-genes-to-pathways/tutorial.html |
|
Gene-set enrichment analysis, Gene functional annotation, Gene set testing |
2018-12-31 |
2026-09-23 |
14 |
True |
False |
False |
True |
Cut1, goseq, Add_a_column1, fgsea, tp_sort_header_tool, egsea, tp_cut_tool, join1 |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium, Galaxy Norway |
Galaxy Canada |
0 |
|
29801 |
46304 |
5.800000 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with CummeRbund |
T00302 |
gxy.io/GTN:T00302 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-cummerbund/tutorial.html |
|
|
2017-10-16 |
2026-09-23 |
17 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4348949 |
9931746 |
12.066667 |
0 |
|
Transcriptomics |
RNA-Seq analysis with AskOmics Interactive Tool |
T00297 |
gxy.io/GTN:T00297 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-with-askomics-it/tutorial.html |
|
|
2020-07-09 |
2023-11-09 |
13 |
True |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4347361 |
9929131 |
18.166667 |
0 |
|
Transcriptomics |
RNA-seq Alignment with STAR |
T00346 |
gxy.io/GTN:T00346 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-bash-star-align/tutorial.html |
|
|
2023-05-15 |
2026-09-23 |
7 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
12687 |
15423 |
3.300000 |
0 |
|
Transcriptomics |
RNA Seq Counts to Viz in R |
T00299 |
gxy.io/GTN:T00299 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-viz-in-r/tutorial.html |
|
|
2019-10-08 |
2026-09-23 |
22 |
True |
False |
True |
False |
interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
4634 |
5881 |
10.950000 |
0 |
|
Transcriptomics |
Visualization of RNA-Seq results with Volcano Plot in R |
T00305 |
gxy.io/GTN:T00305 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot-r/tutorial.html |
|
|
2021-06-14 |
2026-09-23 |
9 |
True |
False |
True |
False |
volcanoplot, interactive_tool_rstudio |
Galaxy Europe |
|
0 |
|
31800 |
43214 |
3.733333 |
0 |
|
Transcriptomics |
Reference-based RNAseq data analysis (long) |
T00294 |
gxy.io/GTN:T00294 |
https://training.galaxyproject.org//topics/transcriptomics/tutorials/rb-rnaseq/tutorial.html |
|
|
2017-02-22 |
2023-02-17 |
12 |
True |
False |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
23107 |
35744 |
4.233333 |
0 |
|
Variant Analysis |
Introduction to Variant analysis |
S00099 |
gxy.io/GTN:S00099 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/introduction/slides.html |
|
|
2016-08-19 |
2023-03-05 |
2 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927660 |
2.016667 |
0 |
|
Variant Analysis |
Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs) |
T00448 |
gxy.io/GTN:T00448 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/beacon_cnv_query/tutorial.html |
|
Genetic variation analysis, Service discovery, Database search |
2024-08-06 |
2026-09-23 |
4 |
True |
False |
False |
False |
beacon2_cnv |
|
Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada |
0 |
|
312 |
352 |
9.700000 |
0 |
|
Variant Analysis |
Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons |
T00449 |
gxy.io/GTN:T00449 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/beaconise_1000hg/tutorial.html |
|
Service discovery, Genetic variation analysis, Database search |
2024-08-06 |
2026-09-23 |
5 |
True |
False |
False |
False |
cnv_vcf2json, cnv_phenopacket, beacon2_cnv, beacon2_import |
|
Galaxy Europe, Galaxy Canada |
0 |
|
527 |
575 |
4.483333 |
0 |
|
Variant Analysis |
Calling very rare variants |
T00310 |
gxy.io/GTN:T00310 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/dunovo/tutorial.html |
|
Sequencing quality control, Generation, Read mapping, Sequence composition calculation, Statistical calculation, Sequence alignment, Variant calling, Genome indexing |
2017-02-22 |
2026-09-23 |
22 |
True |
False |
False |
True |
bamleftalign, correct_barcodes, sequence_content_trimmer, bwa_mem, naive_variant_caller, align_families, make_families, dunovo, allele_counts_1, Filter1, fastqc |
Galaxy Main (US), Galaxy Belgium |
|
0 |
|
2671 |
3844 |
5.533333 |
0 |
|
Variant Analysis |
Calling variants in non-diploid systems |
T00314 |
gxy.io/GTN:T00314 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/non-dip/tutorial.html |
Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation |
Sequencing quality control, Generation, Read mapping, Data handling, Formatting, Sequence composition calculation, Statistical calculation, Sequence alignment, Sequence alignment analysis, Variant calling, Genome indexing |
2017-02-16 |
2026-09-23 |
24 |
True |
False |
False |
True |
Cut1, bamleftalign, bwa_mem, picard_MarkDuplicates, vcffilter2, vcf2tsv, bamFilter, freebayes, picard_MergeSamFiles, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
10494 |
17665 |
5.600000 |
0 |
|
Variant Analysis |
Exome sequencing data analysis for diagnosing a genetic disease |
T00311 |
gxy.io/GTN:T00311 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/exome-seq/tutorial.html |
|
Sequence analysis, Sequencing quality control, Validation, Generation, Read mapping, Sequence composition calculation, Statistical calculation, Genetic variation analysis, Sequence alignment, Visualisation, Variant calling, Genome indexing |
2016-08-19 |
2026-09-23 |
31 |
True |
False |
True |
True |
samtools_view, snpEff, trimmomatic, bwa_mem, bcftools_norm, falco, gemini_load, samtools_rmdup, freebayes, gemini_inheritance, multiqc, snpEff_download, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Australia, Galaxy Canada |
0 |
|
41690 |
73045 |
5.200000 |
0 |
|
Variant Analysis |
Calling variants in diploid systems |
T00309 |
gxy.io/GTN:T00309 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/dip/tutorial.html |
|
Genetic variation analysis, Statistical calculation, Sequence analysis, Variant calling |
2017-02-20 |
2026-09-23 |
18 |
True |
False |
False |
True |
snpEff, gemini_load, gemini_db_info, freebayes, vcfallelicprimitives, gemini_query |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium |
Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Norway |
0 |
|
17615 |
29526 |
8.766667 |
0 |
|
Variant Analysis |
Identification of somatic and germline variants from tumor and normal sample pairs |
T00318 |
gxy.io/GTN:T00318 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variants/tutorial.html |
|
Sequencing quality control, Validation, Generation, Read mapping, Data handling, Sequence composition calculation, Statistical calculation, Sequence alignment, Visualisation, Sequence alignment analysis, Variant calling, Genome indexing |
2019-03-13 |
2026-09-23 |
17 |
True |
False |
False |
True |
bamleftalign, snpEff, bg_column_arrange_by_header, bwa_mem, gemini_load, falco, trimmomatic, varscan_somatic, tp_easyjoin_tool, bamFilter, samtools_rmdup, samtools_calmd, gemini_annotate, multiqc, gemini_query, fastqc |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium |
Galaxy France, Galaxy Canada |
0 |
|
16546 |
28851 |
5.833333 |
0 |
|
Variant Analysis |
Mapping and molecular identification of phenotype-causing mutations |
T00312 |
gxy.io/GTN:T00312 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html |
|
|
2018-03-07 |
2026-09-23 |
17 |
True |
False |
False |
True |
snpEff, mimodd_vcf_filter, mimodd_varcall, snpEff_download, mimodd_varreport, mimodd_varextract, tp_find_and_replace, mimodd_map |
Galaxy Europe, Galaxy Belgium |
Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway |
0 |
|
4962 |
7068 |
10.650000 |
0 |
|
Variant Analysis |
Somatic Variant Discovery from WES Data Using Control-FREEC |
T00317 |
gxy.io/GTN:T00317 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variant-discovery/tutorial.html |
|
Copy number estimation, Sequencing quality control, Validation, Generation, Read mapping, Sequence visualisation, Sequence composition calculation, Statistical calculation, Genome alignment, Sequence alignment, Visualisation, Variant calling, Genome indexing |
2022-10-05 |
2026-09-23 |
15 |
True |
False |
False |
True |
bamleftalign, samtools_view, trimmomatic, bwa_mem, falco, control_freec, __RELABEL_FROM_FILE__, __BUILD_LIST__, tp_text_file_with_recurring_lines, __EXTRACT_DATASET__, samtools_rmdup, samtools_calmd, circos, multiqc, Grep1, tp_replace_in_line, fastqc |
Galaxy Belgium |
Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada |
0 |
|
2239 |
2809 |
8.050000 |
0 |
|
Variant Analysis |
Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates |
T00528 |
gxy.io/GTN:T00528 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/baculovirus-isolate-variation/tutorial.html |
|
Primer removal, Generation, Read mapping, Data handling, Read pre-processing, Sequence trimming, Sequence alignment, Visualisation, Genome indexing |
2025-02-24 |
2025-02-24 |
1 |
True |
False |
False |
True |
bwa_mem, collapse_dataset, trim_galore, ncbi_acc_download, vcf2tsv, tp_awk_tool, bcftools_mpileup, ggplot2_point, fastq_dump, tp_replace_in_column, Filter1, tp_replace_in_line, bcftools_call |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Switzerland |
0 |
|
624 |
747 |
5.583333 |
0 |
|
Variant Analysis |
Trio Analysis using Synthetic Datasets from RD-Connect GPAP |
T00320 |
gxy.io/GTN:T00320 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/trio-analysis/tutorial.html |
|
Genetic variation analysis, Sequence analysis |
2022-05-19 |
2026-09-23 |
14 |
True |
False |
True |
True |
pyega3, snpEff, bcftools_norm, gemini_load, gene_iobio_display_generation_iframe, tp_grep_tool, CONVERTER_uncompressed_to_gz, bcftools_merge, regexColumn1, CONVERTER_gz_to_uncompressed, Filter1, gemini_inheritance |
Galaxy Europe, Galaxy Belgium |
Galaxy Australia, Galaxy Canada |
0 |
|
2363 |
3944 |
9.733333 |
0 |
|
Variant Analysis |
Pangenome variant calling with DeepVariant |
|
gxy.io/GTN:None |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/pangenome-with-deepvariant/tutorial.html |
|
Sequencing quality control, Genome comparison, Read mapping, Visualisation |
2026-09-30 |
2026-09-30 |
1 |
True |
False |
False |
False |
vg_giraffe, deepvariant, falco, samtools_sort, vg_paths, tp_awk_tool, upload1 |
|
Galaxy Europe, Galaxy Main (US) |
0 |
|
6 |
7 |
5.566667 |
0 |
|
Variant Analysis |
Calculating CHEK2 variant effect scores from MAVE data with CountESS |
T00589 |
gxy.io/GTN:T00589 |
https://training.galaxyproject.org//topics/variant-analysis/tutorials/countess-mave-chek2/tutorial.html |
|
Visualisation |
2026-07-30 |
2026-09-23 |
2 |
True |
False |
False |
False |
Cut1, countess, ggplot2_histogram, ggplot2_point, join1 |
Galaxy Europe |
|
0 |
|
90 |
102 |
7.550000 |
0 |
|
Visualisation |
Visualisations in Galaxy |
S00101 |
gxy.io/GTN:S00101 |
https://training.galaxyproject.org//topics/visualisation/tutorials/introduction/slides.html |
|
|
2020-01-10 |
2023-01-12 |
1 |
False |
True |
False |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
4346173 |
9927661 |
2.016667 |
0 |
|
Visualisation |
Visualisation with Circos |
T00321 |
gxy.io/GTN:T00321 |
https://training.galaxyproject.org//topics/visualisation/tutorials/circos/tutorial.html |
|
Sequence visualisation |
2020-01-10 |
2026-09-23 |
23 |
True |
True |
True |
True |
Cut1, Remove beginning1, circos, Grep1, random_lines1, upload1 |
Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium |
Galaxy Norway |
0 |
|
4378356 |
9978226 |
4.666667 |
0 |
|
Visualisation |
Ploting a Microbial Genome with Circos |
T00373 |
gxy.io/GTN:T00373 |
https://training.galaxyproject.org//topics/visualisation/tutorials/circos-microbial/tutorial.html |
|
Sequence visualisation |
2023-11-08 |
2026-09-23 |
4 |
True |
False |
False |
True |
Cut1, circos_gc_skew, circos_interval_to_text, gff2bed1, circos, deeptools_bam_coverage, circos_interval_to_tile, circos_wiggle_to_scatter |
Galaxy France, Galaxy Canada, Galaxy Belgium |
Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Norway |
0 |
|
2029 |
2507 |
8.083333 |
0 |
|
Visualisation |
Friends Don't Let Friends Make Bad Graphs |
S00112 |
gxy.io/GTN:S00112 |
https://training.galaxyproject.org//topics/visualisation/tutorials/bad-graphs/slides.html |
|
|
2023-11-20 |
2023-11-20 |
2 |
False |
True |
True |
False |
|
|
UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca |
0 |
|
2690052 |
5209359 |
1.700000 |
0 |