Expand Topic Title ID Permanent link Link EDAM topic EDAM operation Creation Last modification Version Tutorial Slides Video Workflows Tools Servers with precise tool versions Servers with tool but different versions Feedback number Feedback mean note Visitors Page views Visit duration Video views
Galaxy Server Administration Galaxy on the Cloud S00004 gxy.io/GTN:S00004 https://training.galaxyproject.org//topics/admin/tutorials/cloudbursting/slides.html 2019-01-31 2024-12-19 7 False True False False 0 4427230 10049998 2.000000 0
Galaxy Server Administration Galaxy from an administrator's point of view S00015 gxy.io/GTN:S00015 https://training.galaxyproject.org//topics/admin/tutorials/introduction/slides.html 2017-06-12 2026-10-08 7 False True False False 0 4427230 10049998 2.000000 0
Galaxy Server Administration Galaxy Installation on Kubernetes T00013 gxy.io/GTN:T00013 https://training.galaxyproject.org//topics/admin/tutorials/k8s-deploying-galaxy/tutorial.html 2019-07-02 2026-10-08 8 True False False False 0 1791 2857 5.383333 0
Galaxy Server Administration Managing Galaxy on Kubernetes T00014 gxy.io/GTN:T00014 https://training.galaxyproject.org//topics/admin/tutorials/k8s-managing-galaxy/tutorial.html 2019-07-02 2024-12-19 7 True False False False 0 818 1134 10.300000 0
Galaxy Server Administration Galaxy usage on SURF Research Cloud T00479 gxy.io/GTN:T00479 https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-galaxy/tutorial.html Informatics, Data management 2024-12-18 2025-08-05 4 True False False False 0 205 230 8.433333 0
Galaxy Server Administration Pulsar usage on SURF Research Cloud T00480 gxy.io/GTN:T00480 https://training.galaxyproject.org//topics/admin/tutorials/surf-research-cloud-pulsar/tutorial.html Informatics, Data management 2024-12-18 2024-12-19 3 True False False False 0 187 198 4.016667 0
Galaxy Server Administration Deploying Wireguard for private mesh networking T00026 gxy.io/GTN:T00026 https://training.galaxyproject.org//topics/admin/tutorials/wireguard/tutorial.html 2022-09-21 2024-12-19 4 True False False False 0 1290 1447 3.550000 0
Galaxy Server Administration Deploying Tailscale/Headscale for private mesh networking T00027 gxy.io/GTN:T00027 https://training.galaxyproject.org//topics/admin/tutorials/wireguard-headscale/tutorial.html Data security, Software engineering 2022-09-21 2024-12-19 4 True False False False 0 2630 3327 1.266667 0
Galaxy Server Administration Deploying a compute cluster in OpenStack via Terraform T00021 gxy.io/GTN:T00021 https://training.galaxyproject.org//topics/admin/tutorials/terraform/tutorial.html 2018-10-27 2024-12-19 15 True True False False 0 4443531 10080447 3.350000 0
Galaxy Server Administration User, Role, Group, Quota, and Authentication managment S00027 gxy.io/GTN:S00027 https://training.galaxyproject.org//topics/admin/tutorials/users-groups-quotas/slides.html 2018-01-07 2024-08-08 19 False True True False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Server Maintenance: Cleanup, Backup, and Restoration T00324 gxy.io/GTN:T00324 https://training.galaxyproject.org//topics/admin/tutorials/backup-cleanup/tutorial.html Database management, Informatics, Data management 2019-01-31 2025-11-24 10 True True True False 0 4427978 10050953 19.700000 0
Galaxy Server Administration Running Jobs on Remote Resources with Pulsar T00017 gxy.io/GTN:T00017 https://training.galaxyproject.org//topics/admin/tutorials/pulsar/tutorial.html 2019-01-28 2026-01-23 59 True True True False 0 4430144 10054603 9.500000 0
Galaxy Server Administration Controlling Galaxy with systemd or Supervisor S00023 gxy.io/GTN:S00023 https://training.galaxyproject.org//topics/admin/tutorials/systemd-supervisor/slides.html 2019-01-28 2023-04-16 5 False True True False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Galaxy Monitoring with Telegraf and Grafana T00015 gxy.io/GTN:T00015 https://training.galaxyproject.org//topics/admin/tutorials/monitoring/tutorial.html 2019-01-31 2026-04-29 56 True True True False 0 4430383 10055626 6.900000 0
Galaxy Server Administration Galaxy Administrator Time Burden and Technology Usage S00122 gxy.io/GTN:S00122 https://training.galaxyproject.org//topics/admin/tutorials/poll-ssa/slides.html 2024-07-10 2026-10-08 2 False True False False 0 2408111 4454084 1.550000 0
Galaxy Server Administration Empathy S00009 gxy.io/GTN:S00009 https://training.galaxyproject.org//topics/admin/tutorials/empathy/slides.html 2019-01-31 2021-04-06 4 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Connecting Galaxy to a compute cluster T00002 gxy.io/GTN:T00002 https://training.galaxyproject.org//topics/admin/tutorials/connect-to-compute-cluster/tutorial.html 2018-01-07 2026-10-08 65 True True True False 0 4431680 10057427 10.783333 0
Galaxy Server Administration uWSGI S00028 gxy.io/GTN:S00028 https://training.galaxyproject.org//topics/admin/tutorials/uwsgi/slides.html 2019-01-28 2022-03-01 9 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Galaxy Troubleshooting S00026 gxy.io/GTN:S00026 https://training.galaxyproject.org//topics/admin/tutorials/troubleshooting/slides.html 2019-01-28 2024-06-25 15 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration External Authentication T00007 gxy.io/GTN:T00007 https://training.galaxyproject.org//topics/admin/tutorials/external-auth/tutorial.html 2019-01-28 2022-10-18 14 True True False False 0 4428059 10051231 9.133333 0
Galaxy Server Administration Data Libraries T00005 gxy.io/GTN:T00005 https://training.galaxyproject.org//topics/admin/tutorials/data-library/tutorial.html 2021-01-14 2025-11-24 35 True True True False 0 4412041 9987561 8.866667 0
Galaxy Server Administration Galaxy Tool Management with Ephemeris T00023 gxy.io/GTN:T00023 https://training.galaxyproject.org//topics/admin/tutorials/tool-management/tutorial.html 2019-01-27 2025-04-03 39 True True True False 0 4429705 10053360 12.016667 0
Galaxy Server Administration Advanced customisation of a Galaxy instance S00000 gxy.io/GTN:S00000 https://training.galaxyproject.org//topics/admin/tutorials/advanced-galaxy-customisation/slides.html 2017-06-27 2023-04-17 18 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Reference Data with Data Managers T00329 gxy.io/GTN:T00329 https://training.galaxyproject.org//topics/admin/tutorials/reference-genomes/tutorial.html Genome indexing, Read mapping, Sequence alignment, Generation 2019-01-28 2026-01-23 7 True True False False data_manager_fetch_genome_all_fasta_dbkey, bwa_mem_index_builder_data_manager, bwa 0 4428076 10051040 19.566667 0
Galaxy Server Administration Galactic Database S00008 gxy.io/GTN:S00008 https://training.galaxyproject.org//topics/admin/tutorials/database/slides.html 2019-01-28 2025-11-20 6 False True True False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Galaxy Monitoring with gxadmin T00009 gxy.io/GTN:T00009 https://training.galaxyproject.org//topics/admin/tutorials/gxadmin/tutorial.html 2019-01-28 2025-11-13 27 True True True False 0 4428285 10051569 16.550000 0
Galaxy Server Administration Gearing towards production S00019 gxy.io/GTN:S00019 https://training.galaxyproject.org//topics/admin/tutorials/production/slides.html 2019-01-28 2025-11-20 11 False True True False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Galaxy Interactive Tools T00010 gxy.io/GTN:T00010 https://training.galaxyproject.org//topics/admin/tutorials/interactive-tools/tutorial.html 2020-02-27 2026-01-23 30 True True True False 0 4429831 10053792 9.366667 0
Galaxy Server Administration Docker and Galaxy S00011 gxy.io/GTN:S00011 https://training.galaxyproject.org//topics/admin/tutorials/galaxy-docker/slides.html 2016-09-29 2022-10-18 16 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Distributed Object Storage T00016 gxy.io/GTN:T00016 https://training.galaxyproject.org//topics/admin/tutorials/object-store/tutorial.html 2019-01-28 2025-03-24 28 True True True False 0 4428749 10052295 9.900000 0
Galaxy Server Administration Server: Other S00022 gxy.io/GTN:S00022 https://training.galaxyproject.org//topics/admin/tutorials/stuff/slides.html 2018-01-07 2023-02-17 6 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Ansible T00000 gxy.io/GTN:T00000 https://training.galaxyproject.org//topics/admin/tutorials/ansible/tutorial.html 2018-07-11 2024-08-08 48 True True True False 0 4434064 10061962 7.650000 0
Galaxy Server Administration Setting up Celery Workers for Galaxy T00326 gxy.io/GTN:T00326 https://training.galaxyproject.org//topics/admin/tutorials/celery/tutorial.html 2022-07-16 2025-11-24 19 True True False False 0 3563948 7229722 11.033333 0
Galaxy Server Administration Galaxy Monitoring S00012 gxy.io/GTN:S00012 https://training.galaxyproject.org//topics/admin/tutorials/general-monitoring/slides.html 2019-04-26 2022-03-01 5 False True False False 0 4427230 10049999 2.000000 0
Galaxy Server Administration Galaxy Installation with Ansible T00001 gxy.io/GTN:T00001 https://training.galaxyproject.org//topics/admin/tutorials/ansible-galaxy/tutorial.html Database management, Informatics, Data management 2019-01-28 2026-01-23 109 True True True False 0 4453990 10098897 5.566667 0
Galaxy Server Administration Reference Data with CVMFS T00003 gxy.io/GTN:T00003 https://training.galaxyproject.org//topics/admin/tutorials/cvmfs/tutorial.html 2019-01-27 2026-07-12 56 True True True False 0 4429782 10053644 11.033333 0
Galaxy Server Administration Customizing the look of Galaxy T00327 gxy.io/GTN:T00327 https://training.galaxyproject.org//topics/admin/tutorials/customization/tutorial.html 2023-04-16 2025-11-22 8 True False False False 0 783 932 16.366667 0
Galaxy Server Administration Alternative Celery Deployment for Galaxy T00468 gxy.io/GTN:T00468 https://training.galaxyproject.org//topics/admin/tutorials/celeryless/tutorial.html 2024-11-07 2024-11-07 1 True False False False 0 176 187 17.733333 0
Galaxy Server Administration Use Apptainer containers for running Galaxy jobs T00323 gxy.io/GTN:T00323 https://training.galaxyproject.org//topics/admin/tutorials/apptainer/tutorial.html 2021-01-08 2026-07-12 20 True False True False 0 1349 1670 11.216667 0
Galaxy Server Administration Galaxy Database schema T00006 gxy.io/GTN:T00006 https://training.galaxyproject.org//topics/admin/tutorials/database-schema/tutorial.html 2016-07-20 2025-04-08 23 True False False False 0 3248 5188 3.616667 0
Galaxy Server Administration Configuring the Onedata connectors (remotes, Object Store, BYOS, BYOD) T00478 gxy.io/GTN:T00478 https://training.galaxyproject.org//topics/admin/tutorials/onedata-configuration/tutorial.html 2025-03-24 2025-04-08 2 True False False False 0 203 235 24.683333 0
Galaxy Server Administration Customizing the look of Galaxy (Manual) T00328 gxy.io/GTN:T00328 https://training.galaxyproject.org//topics/admin/tutorials/customization-manual/tutorial.html 2023-04-16 2025-04-08 2 True False False False 0 318 365 11.283333 0
Galaxy Server Administration Deploying a Beacon v1 in Galaxy T00325 gxy.io/GTN:T00325 https://training.galaxyproject.org//topics/admin/tutorials/beacon/tutorial.html 2023-04-16 2025-11-22 7 True False False False 0 257 275 20.666667 0
Galaxy Server Administration Training Infrastructure as a Service (TIaaS) T00022 gxy.io/GTN:T00022 https://training.galaxyproject.org//topics/admin/tutorials/tiaas/tutorial.html 2020-02-12 2025-11-24 45 True False True False 0 717 920 14.683333 0
Galaxy Server Administration Mapping Jobs to Destinations using TPV T00012 gxy.io/GTN:T00012 https://training.galaxyproject.org//topics/admin/tutorials/job-destinations/tutorial.html 2021-01-17 2026-01-23 44 True False True False 0 1988 2987 10.816667 0
Galaxy Server Administration Enable upload via FTP T00008 gxy.io/GTN:T00008 https://training.galaxyproject.org//topics/admin/tutorials/ftp/tutorial.html 2021-06-18 2025-12-18 29 True False False False 0 1430 1896 10.966667 0
Galaxy Server Administration How I learned to stop worrying and love the systemd T00020 gxy.io/GTN:T00020 https://training.galaxyproject.org//topics/admin/tutorials/stop-worrying-love-systemd/tutorial.html 2022-07-06 2023-09-28 3 True False False False 0 816 919 7.150000 0
Galaxy Server Administration Monitoring Galaxy and Pulsar with Sentry T00330 gxy.io/GTN:T00330 https://training.galaxyproject.org//topics/admin/tutorials/sentry/tutorial.html 2023-04-19 2025-12-18 13 True False False False 0 323 374 15.133333 0
Galaxy Server Administration Create a subdomain for your community on UseGalaxy.eu T00473 gxy.io/GTN:T00473 https://training.galaxyproject.org//topics/admin/tutorials/subdomain/tutorial.html 2024-11-27 2024-12-13 2 True False False False 0 135 147 32.200000 0
Galaxy Server Administration Upgrading Galaxy T00025 gxy.io/GTN:T00025 https://training.galaxyproject.org//topics/admin/tutorials/upgrading/tutorial.html 2021-06-08 2026-01-23 11 True False True False 0 884 1282 8.883333 0
Galaxy Server Administration Performant Uploads with TUS T00024 gxy.io/GTN:T00024 https://training.galaxyproject.org//topics/admin/tutorials/tus/tutorial.html 2022-03-01 2025-11-22 22 True False True False 0 1039 1460 16.233333 0
Galaxy Server Administration Automation with Jenkins T00011 gxy.io/GTN:T00011 https://training.galaxyproject.org//topics/admin/tutorials/jenkins/tutorial.html 2019-08-06 2022-10-18 10 True False False False 0 8493 16658 1.683333 0
Galaxy Server Administration Galaxy Monitoring with Reports T00018 gxy.io/GTN:T00018 https://training.galaxyproject.org//topics/admin/tutorials/reports/tutorial.html 2019-01-31 2026-01-23 49 True False False False 0 621 795 15.433333 0
Galaxy Server Administration Adding file-sources to Galaxy T00529 gxy.io/GTN:T00529 https://training.galaxyproject.org//topics/admin/tutorials/file_sources/tutorial.html 2025-01-20 2025-01-20 1 True False False False 0 139 162 27.950000 0
Galaxy Server Administration Reference Data with CVMFS without Ansible T00004 gxy.io/GTN:T00004 https://training.galaxyproject.org//topics/admin/tutorials/cvmfs-manual/tutorial.html 2020-06-17 2026-07-12 11 True False False False 0 564 722 13.750000 0
Image Analysis using Deep Learning Welcome to the BioImage Model Zoo S00106 gxy.io/GTN:S00106 https://training.galaxyproject.org//topics/ai4life/tutorials/welcome-bioimageio/slides.html 2023-05-11 2023-05-18 3 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3068036 5974228 1.733333 0
Image Analysis using Deep Learning BioImage Model Zoo: Advanced models in one-click S00105 gxy.io/GTN:S00105 https://training.galaxyproject.org//topics/ai4life/tutorials/getting-started/slides.html 2023-04-18 2023-05-24 4 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3115204 6077624 1.750000 0
Image Analysis using Deep Learning Contribute to the BioImage.IO models S00107 gxy.io/GTN:S00107 https://training.galaxyproject.org//topics/ai4life/tutorials/contribute-materials/slides.html 2023-05-18 2023-05-24 3 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3053100 5941852 1.733333 0
Assembly An Introduction to Genome Assembly T00034 gxy.io/GTN:T00034 https://training.galaxyproject.org//topics/assembly/tutorials/general-introduction/tutorial.html Visualisation, Sequence composition calculation, De-novo assembly, Statistical calculation, Formatting, Validation, Sequencing quality control, Sequence assembly validation 2017-05-23 2026-09-23 32 True True True True multiqc, fastqc, velveth, quast, velvetg, fastq_paired_end_interlacer Galaxy Main (US), Galaxy Australia Galaxy Europe, Galaxy France, Galaxy Canada, Galaxy Belgium 0 4468321 10115903 8.800000 0
Assembly Genome assembly using PacBio data T00531 gxy.io/GTN:T00531 https://training.galaxyproject.org//topics/assembly/tutorials/hifi-assembly/tutorial.html Genomics, Sequence assembly, Biodiversity Mapping assembly, Visualisation, Cross-assembly, De-novo assembly, Genome assembly, Sequence assembly validation 2021-11-29 2026-09-23 3 True False False True gfa_to_fa, busco, hifiasm, quast, fasta-stats, flye Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France Galaxy Canada, Galaxy Norway 0 2366 2838 6.666667 0
Assembly Assembly of the mitochondrial genome from PacBio HiFi reads T00453 gxy.io/GTN:T00453 https://training.galaxyproject.org//topics/assembly/tutorials/mitochondrion-assembly/tutorial.html Genomics, Sequence assembly, Biodiversity, Mitochondria 2024-09-03 2026-09-23 7 True False True True mitohifi, compress_file Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 1580 1869 11.883333 0
Assembly Using the VGP workflows to assemble a vertebrate genome with HiFi and Hi-C data T00040 gxy.io/GTN:T00040 https://training.galaxyproject.org//topics/assembly/tutorials/vgp_workflow_training/tutorial.html Sequence assembly, Chromosome conformation capture Visualisation, Sequence assembly validation 2022-04-06 2026-09-23 29 True False True False quast Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 5172 6740 7.083333 0
Assembly Chloroplast genome assembly T00030 gxy.io/GTN:T00030 https://training.galaxyproject.org//topics/assembly/tutorials/chloroplast-assembly/tutorial.html Generation, Coding region prediction, Genome visualisation, Mapping assembly, Sequence assembly visualisation, De-novo assembly, Sequence alignment, Genome indexing, Scatter plot plotting, Gene prediction, Read alignment, Box-Whisker plot plotting, Cross-assembly, Sequence assembly, Analysis, Read mapping, Genome annotation, Genome assembly 2020-12-04 2026-09-23 24 True False True True prokka, pilon, bandage_image, nanoplot, bandage_info, upload1, bwa_mem, fasta-stats, jbrowse, flye Galaxy Europe Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 9235 14128 8.033333 0
Assembly Genome Assembly of MRSA from Oxford Nanopore MinION data (and optionally Illumina data) T00037 gxy.io/GTN:T00037 https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-nanopore/tutorial.html Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Antimicrobial resistance Mapping assembly, Sequence assembly visualisation, Sequence composition calculation, Filtering, Sequence alignment, Box-Whisker plot plotting, Sequence contamination filtering, Statistical calculation, Cross-assembly, Read mapping, Visualisation, De-novo assembly, Scatter plot plotting, Sequencing quality control, Sequencing error detection, Genome assembly, Sequence assembly validation 2021-03-24 2026-09-23 17 True False False True polypolish, bandage_image, fastp, fastqc, bwa_mem2, nanoplot, porechop, __FLATTEN__, upload1, quast, __EXTRACT_DATASET__, filtlong, CONVERTER_bz2_to_uncompressed, flye Galaxy Europe, Galaxy Belgium Galaxy France, Galaxy Canada 0 12334 18207 7.683333 0
Assembly Genome Assembly of a bacterial genome (MRSA) sequenced using Illumina MiSeq Data T00036 gxy.io/GTN:T00036 https://training.galaxyproject.org//topics/assembly/tutorials/mrsa-illumina/tutorial.html Sequence assembly, Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology Visualisation, Sequence assembly visualisation, Sequence contamination filtering, Sequencing quality control, Read mapping, Genome assembly, Sequence assembly validation 2021-03-24 2026-09-23 20 True False True True falco, bandage_image, fastp, shovill, bandage_info, upload1, quast Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Switzerland, Galaxy Canada 0 12764 19186 9.333333 0
Assembly Large genome assembly and polishing T00331 gxy.io/GTN:T00331 https://training.galaxyproject.org//topics/assembly/tutorials/largegenome/tutorial.html Genomics, Sequence assembly, Biodiversity Mapping assembly, Sequence assembly visualisation, Sequence composition calculation, Box-Whisker plot plotting, Sequence contamination filtering, Statistical calculation, Cross-assembly, Sequence assembly, Validation, Pairwise sequence alignment, Visualisation, Variant calling, De-novo assembly, Base-calling, Scatter plot plotting, Sequencing quality control, Genome assembly, Sequence assembly validation 2023-03-06 2026-09-23 17 True False True True multiqc, bandage_image, fastp, fastqc, meryl, nanoplot, busco, medaka_consensus_pipeline, racon, genomescope, quast, barchart_gnuplot, minimap2, fasta-stats, flye Galaxy Europe, Galaxy Australia, Galaxy Belgium 0 9084 11618 5.533333 0
Assembly Hybrid genome assembly - Nanopore and Illumina T00563 gxy.io/GTN:T00563 https://training.galaxyproject.org//topics/assembly/tutorials/hybrid_denovo_assembly/tutorial.html Generation, Mapping assembly, Visualisation, De-novo assembly, Sequence alignment, Genome indexing, Read alignment, Cross-assembly, Validation, Aggregation, Analysis, Sequence assembly, Sequencing quality control, Read mapping, Genome assembly, Sequence assembly validation 2025-11-03 2026-09-23 5 True False False True multiqc, pilon, busco, unicycler, quast, bwa_mem, flye Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 2308 2769 4.250000 0
Assembly Unicycler assembly of SARS-CoV-2 genome with preprocessing to remove human genome reads T00029 gxy.io/GTN:T00029 https://training.galaxyproject.org//topics/assembly/tutorials/assembly-with-preprocessing/tutorial.html Sequence assembly visualisation, Sequence file editing, Scatter plot plotting, Box-Whisker plot plotting, Sequence contamination filtering, Validation, Aggregation, Data handling, Sequencing quality control, Read mapping, Pairwise sequence alignment, Genome assembly 2020-04-21 2026-10-08 15 True True True True multiqc, bandage_image, bowtie2, fastp, nanoplot, samtools_fastx, fasta_filter_by_length, fasterq_dump, samtools_stats, bandage_info, __ZIP_COLLECTION__, unicycler, collapse_dataset, seqtk_sample, samtools_view, minimap2 Galaxy Europe, Galaxy Australia Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4434325 10061493 10.600000 0
Assembly Making sense of a newly assembled genome T00032 gxy.io/GTN:T00032 https://training.galaxyproject.org//topics/assembly/tutorials/ecoli_comparison/tutorial.html Sequence assembly, Genomics, Microbiology Sequence visualisation, Mapping, Genome visualisation, Read mapping, Sequence alignment 2018-06-14 2026-09-23 32 True False False True circos_aln_to_links, random_lines1, join1, addValue, tp_grep_tool, datamash_ops, tp_sed_tool, bedtools_intersectbed, mergeCols1, fasta_compute_length, lastz_wrapper_2, circos, Cut1, tp_cat, circos_interval_to_tiles, fasta_filter_by_length, tp_replace_in_column, upload1, tp_replace_in_line, bedtools_sortbed, jbrowse, Filter1, cat1, tp_sort_header_tool, bedtools_complementbed, collapse_dataset, Grep1 0 7220 13538 8.200000 0
Assembly Vertebrate genome assembly using HiFi, Bionano and Hi-C data - Step by Step T00039 gxy.io/GTN:T00039 https://training.galaxyproject.org//topics/assembly/tutorials/vgp_genome_assembly/tutorial.html Genomics, Sequence assembly, Biodiversity Mapping, Visualisation, k-mer counting, De-novo assembly, Read pre-processing, Phasing, Sequence alignment, Scaffolding, Primer removal, Data handling, Sequence trimming, Genome assembly, Read binning, Pairwise sequence alignment, Sequence assembly validation 2021-06-04 2026-09-23 60 True False True True bedtools_bamtobed, gfa_to_fa, Add_a_column1, hifiasm, tp_grep_tool, Convert characters1, genomescope, quast, bionano_scaffold, busco, gfastats, collection_column_join, bellerophon, merqury, purge_dups, sort1, tp_find_and_replace, pretext_map, pretext_snapshot, minimap2, meryl, bwa_mem2, cat1, tp_cut_tool, yahs, collapse_dataset, salsa, cutadapt Galaxy Canada 0 20886 29833 3.100000 0
Assembly De Bruijn Graph Assembly T00031 gxy.io/GTN:T00031 https://training.galaxyproject.org//topics/assembly/tutorials/debruijn-graph-assembly/tutorial.html Optimisation and refinement, Sequence assembly visualisation, Formatting, Sequence assembly, De-novo assembly, Genome assembly 2017-05-24 2026-09-23 28 True True False True bandage_image, spades, velveth, velvetg, velvetoptimiser, fasta-stats Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Canada 0 4434492 10061320 10.716667 0
Assembly Genome Assembly Quality Control T00028 gxy.io/GTN:T00028 https://training.galaxyproject.org//topics/assembly/tutorials/assembly-quality-control/tutorial.html Biodiversity, Sequence assembly, Data quality management Visualisation, k-mer counting, De-novo assembly, Genome assembly, Phasing, Scaffolding, Sequence assembly validation 2022-08-26 2026-09-23 7 True True False True meryl, busco, quast, chromeister, merqury Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Belgium Galaxy Switzerland, Galaxy Canada 0 3519603 7097848 10.016667 0
Assembly Unicycler Assembly T00038 gxy.io/GTN:T00038 https://training.galaxyproject.org//topics/assembly/tutorials/unicycler-assembly/tutorial.html Sequence assembly, Genomics, Microbiology Coding region prediction, Visualisation, Sequence composition calculation, Gene prediction, Statistical calculation, Validation, Aggregation, Sequencing quality control, Genome annotation, Genome assembly, Sequence assembly validation 2017-10-11 2026-09-23 27 True True False True multiqc, prokka, fastqc, unicycler, quast Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4441231 10073447 7.033333 0
Assembly Decontamination of a genome assembly T00452 gxy.io/GTN:T00452 https://training.galaxyproject.org//topics/assembly/tutorials/assembly-decontamination/tutorial.html Genomics, Sequence assembly, Biodiversity Taxonomic classification, Data handling 2024-09-04 2026-09-23 7 True False True True ncbi_dustmasker_wrapper, parse_mito_blast, tp_sed_tool, Filter1, kraken2, gfastats, ncbi_blastn_wrapper, Cut1, tp_cat Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Switzerland, Galaxy Canada 0 2608 3142 8.716667 0
Assembly ERGA post-assembly QC T00355 gxy.io/GTN:T00355 https://training.galaxyproject.org//topics/assembly/tutorials/ERGA-post-assembly-QC/tutorial.html Genomics, Sequence assembly, Biodiversity Visualisation, k-mer counting, Sequence assembly visualisation, De-novo assembly, Data parsing, Phasing, Scaffolding, Sequence alignment, Sequence alignment analysis, Genotyping, Data handling, Sequence trimming, Genome assembly, Pairwise sequence alignment, Data deposition, Sequence assembly validation 2023-06-23 2026-09-23 9 True False True True blobtoolkit, genomescope, __EXTRACT_DATASET__, smudgeplot, bandage_image, busco, gfastats, samtools_stats, bellerophon, merqury, tp_find_and_replace, bg_diamond, pretext_map, pretext_snapshot, minimap2, interactive_tool_blobtoolkit, CONVERTER_gz_to_uncompressed, meryl, bwa_mem2, collapse_dataset Galaxy Europe Galaxy Main (US), Galaxy Australia 0 2940 3686 8.766667 0
Assembly An introduction to get started in genome assembly and annotation S00034 gxy.io/GTN:S00034 https://training.galaxyproject.org//topics/assembly/tutorials/get-started-genome-assembly/slides.html 2021-11-30 2026-09-23 8 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3937363 8424950 1.916667 0
Assembly Deeper look into Genome Assembly algorithms S00029 gxy.io/GTN:S00029 https://training.galaxyproject.org//topics/assembly/tutorials/algorithms-introduction/slides.html 2021-01-12 2026-09-23 2 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4406956 9981468 2.000000 0
Assembly Genome assembly and assembly QC - Introduction short version S00138 gxy.io/GTN:S00138 https://training.galaxyproject.org//topics/assembly/tutorials/assembly_and_qc_short/slides.html 2025-04-22 2026-09-23 5 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1965215 3341024 1.316667 0
Earth Data Science Introduction to climate data S00037 gxy.io/GTN:S00037 https://training.galaxyproject.org//topics/climate/tutorials/introduction/slides.html 2020-10-11 2026-07-13 3 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050004 2.000000 0
Earth Data Science Analyse Argo data T00428 gxy.io/GTN:T00428 https://training.galaxyproject.org//topics/climate/tutorials/argo_pangeo/tutorial.html 2024-03-24 2025-05-10 2 True False False True xarray_coords_info, argo_getdata, timeseries_extraction, xarray_metadata_info, interactive_tool_odv Galaxy Europe, Galaxy France 0 491 562 11.000000 0
Earth Data Science Pangeo Notebook in Galaxy - Introduction to Xarray T00045 gxy.io/GTN:T00045 https://training.galaxyproject.org//topics/climate/tutorials/pangeo-notebook/tutorial.html 2022-02-18 2026-09-23 13 True True True True interactive_tool_pangeo_notebook Galaxy Europe 0 3812616 8025847 14.900000 0
Earth Data Science Sentinel 5P data visualisation T00396 gxy.io/GTN:T00396 https://training.galaxyproject.org//topics/climate/tutorials/sentinel5_data/tutorial.html 2024-01-26 2026-08-14 4 True False False True interactive_tool_panoply, interactive_tool_copernicus_notebook Galaxy Europe 0 487 541 6.950000 0
Earth Data Science Pangeo ecosystem 101 for everyone - Introduction to Xarray Galaxy Tools T00044 gxy.io/GTN:T00044 https://training.galaxyproject.org//topics/climate/tutorials/pangeo/tutorial.html Visualisation 2022-02-18 2026-09-23 8 True True True True ggplot2_point, xarray_coords_info, __MERGE_COLLECTION__, xarray_netcdf2netcdf, xarray_metadata_info, __EXTRACT_DATASET__, graphicsmagick_image_montage, xarray_mapplot, xarray_select, climate_stripes, regexColumn1 Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Canada 0 3812295 8025213 13.616667 0
Earth Data Science Ocean's variables study T00376 gxy.io/GTN:T00376 https://training.galaxyproject.org//topics/climate/tutorials/ocean-variables/tutorial.html 2023-11-29 2025-05-10 5 True False False True interactive_tool_odv, interactive_tool_divand, divand_full_analysis Galaxy Europe 0 367 416 13.100000 0
Earth Data Science Getting your hands-on climate data T00041 gxy.io/GTN:T00041 https://training.galaxyproject.org//topics/climate/tutorials/climate-101/tutorial.html Visualisation 2020-04-30 2026-07-13 16 True False False True ggplot2_point, datamash_ops, cds_essential_variability, tp_awk_tool, interactive_tool_panoply, Grep1, psy_maps, climate_stripes Galaxy Europe 0 1366 1812 7.983333 0
Earth Data Science Functionally Assembled Terrestrial Ecosystem Simulator (FATES) T00042 gxy.io/GTN:T00042 https://training.galaxyproject.org//topics/climate/tutorials/fates/tutorial.html Visualisation 2020-10-25 2026-09-23 20 True True True True ggplot2_point, tp_find_and_replace, interactive_tool_panoply, ctsm_fates, xarray_metadata_info, __EXTRACT_DATASET__, xarray_select Galaxy Europe, Galaxy Main (US) 0 4428950 10052594 8.200000 0
Earth Data Science Nitrate DMQC for autonomous platforms such as Argo floats T00548 gxy.io/GTN:T00548 https://training.galaxyproject.org//topics/climate/tutorials/ocean_qcv_analysis/tutorial.html 2025-08-08 2025-09-16 3 True False False True tool_odv, tool_biogeochemical_calibration, interactive_tool_odv, tool_odv_history, harmonize_insitu_to_netcdf Galaxy Europe, Galaxy France 0 192 209 11.816667 0
Earth Data Science Visualize Climate data with Panoply netCDF viewer T00046 gxy.io/GTN:T00046 https://training.galaxyproject.org//topics/climate/tutorials/panoply/tutorial.html 2020-03-05 2026-09-23 20 True False False False interactive_tool_panoply Galaxy Europe, Galaxy Main (US), Galaxy France 0 7039 11095 1.950000 0
Earth Data Science Ocean Data View (ODV) T00375 gxy.io/GTN:T00375 https://training.galaxyproject.org//topics/climate/tutorials/ocean-data-view/tutorial.html 2023-11-27 2026-08-14 3 True False False False interactive_tool_odv Galaxy Europe, Galaxy France 0 680 797 8.683333 0
Earth Data Science Getting your hands-on earth data T00457 gxy.io/GTN:T00457 https://training.galaxyproject.org//topics/climate/tutorials/earth_system/tutorial.html 2024-10-04 2025-05-10 2 True False False False c3s, argo_getdata, obis_data, spocc_occ Galaxy Europe, Galaxy Canada, Galaxy Belgium 0 260 307 17.716667 0
Earth Data Science Functionally Assembled Terrestrial Ecosystem Simulator (FATES) with Galaxy Climate JupyterLab T00043 gxy.io/GTN:T00043 https://training.galaxyproject.org//topics/climate/tutorials/fates-jupyterlab/tutorial.html 2020-10-25 2026-09-23 18 True False False False interactive_tool_jupyter_notebook Galaxy Europe, Galaxy Main (US), Galaxy Switzerland 0 677 1089 9.533333 0
Earth Data Science Collaboration with JupyterGIS T00481 gxy.io/GTN:T00481 https://training.galaxyproject.org//topics/climate/tutorials/jupytergis_collaboration/tutorial.html 2025-04-03 2026-08-14 6 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 321 373 9.033333 0
Galaxy Community Building What's a Special Interest Group? T00444 gxy.io/GTN:T00444 https://training.galaxyproject.org//topics/community/tutorials/sig_define/tutorial.html 2024-07-08 2024-12-20 3 True False False False 0 266 308 14.866667 0
Galaxy Community Building Creating community content T00482 gxy.io/GTN:T00482 https://training.galaxyproject.org//topics/community/tutorials/community_content/tutorial.html 2024-12-20 2024-12-20 4 True False False False 0 256 273 10.650000 0
Galaxy Community Building Creating a Special Interest Group T00443 gxy.io/GTN:T00443 https://training.galaxyproject.org//topics/community/tutorials/sig_create/tutorial.html 2024-07-08 2024-12-20 2 True False False False 0 339 357 11.850000 0
Galaxy Community Building Creation of resources listing Galaxy workflow for your community T00559 gxy.io/GTN:T00559 https://training.galaxyproject.org//topics/community/tutorials/community-workflow-table/tutorial.html 2025-09-17 2025-11-27 3 True False False False 0 93 96 41.350000 0
Galaxy Community Building Creation of resources listing all the tools and their metadata relevant to your community T00475 gxy.io/GTN:T00475 https://training.galaxyproject.org//topics/community/tutorials/community-tool-table/tutorial.html 2024-03-13 2026-04-30 6 True False False False 0 234 260 19.400000 0
Galaxy Community Building Creation of the labs in the different Galaxy instances for your community T00561 gxy.io/GTN:T00561 https://training.galaxyproject.org//topics/community/tutorials/community-lab/tutorial.html 2025-10-04 2026-08-05 8 True False False False 0 158 183 28.800000 0
Galaxy Community Building Creation of a Galaxy tutorial table for your community T00558 gxy.io/GTN:T00558 https://training.galaxyproject.org//topics/community/tutorials/community-tutorial-table/tutorial.html 2025-09-17 2026-08-12 3 True False False False 0 101 105 11.883333 0
Galaxy Community Building Make your tools available on your subdomain T00476 gxy.io/GTN:T00476 https://training.galaxyproject.org//topics/community/tutorials/tools_subdomains/tutorial.html 2024-12-03 2024-12-20 2 True False False False 0 117 134 30.850000 0
Computational Chemistry High Throughput Molecular Dynamics and Analysis T00050 gxy.io/GTN:T00050 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/htmd-analysis/tutorial.html 2020-05-20 2026-09-23 20 True False True True bio3d_pca, bio3d_rmsd, gmx_energy, gmx_merge_topology_files, vmd_hbonds, gmx_editconf, gmx_sim, md_converter, bio3d_rmsf, openbabel_compound_convert, tp_grep_tool, get_pdb, bio3d_pca_visualize, gmx_em, ambertools_acpype, mdanalysis_cosine_analysis, gmx_solvate, gmx_setup Galaxy Main (US), Galaxy Australia Galaxy Europe, Galaxy Canada, Galaxy Norway 0 12724 21593 4.833333 0
Computational Chemistry Running molecular dynamics simulations using NAMD T00052 gxy.io/GTN:T00052 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-namd/tutorial.html 2019-06-03 2023-11-09 9 True False False True namd_npt, namd_nvt, setup, minimizer 0 4592 7477 4.616667 0
Computational Chemistry Data management in Medicinal Chemistry T00381 gxy.io/GTN:T00381 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/med-chem-data/tutorial.html 2024-01-08 2026-09-23 5 True False True True chembl, ctb_silicos_qed, ctb_im_rxn_maker, openbabel_svg_depiction, md_converter, openbabel_compound_convert, get_pdb Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 762 889 12.416667 0
Computational Chemistry Protein-ligand docking T00048 gxy.io/GTN:T00048 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/cheminformatics/tutorial.html 2019-10-19 2026-07-23 18 True False False True chembl, ctb_np-likeness-calculator, ctb_change_title, tp_grep_tool, sdf_to_tab, ctb_chemfp_nxn_clustering, prepare_box, ctb_online_data_fetch, openbabel_svg_depiction, ctb_compound_convert, ctb_chemfp_mol2fps, ctb_filter, prepare_receptor, tp_cat, ctb_remDuplicates, fpocket, tp_find_and_replace, openbabel_compound_convert, ctb_chemfp_butina_clustering, get_pdb, docking, ctb_remIons, ctb_obgrep, collapse_dataset Galaxy Main (US) 0 21949 36533 3.250000 0
Computational Chemistry Analysis of molecular dynamics simulations T00047 gxy.io/GTN:T00047 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/analysis-md-simulations/tutorial.html 2019-06-03 2023-11-09 13 True False False True bio3d_pca, mdanalysis_dihedral, bio3d_rmsd, mdanalysis_ramachandran_plot, bio3d_rmsf, mdanalysis_distance, mdanalysis_rdf, mdanalysis_cosine_analysis Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy Canada, Galaxy Norway 0 34111 59458 2.466667 0
Computational Chemistry Running molecular dynamics simulations using GROMACS T00051 gxy.io/GTN:T00051 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/md-simulation-gromacs/tutorial.html 2019-06-03 2023-11-09 15 True False False True gmx_editconf, gmx_sim, tp_grep_tool, get_pdb, gmx_em, gmx_solvate, gmx_setup Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 29981 51662 2.466667 0
Computational Chemistry Protein target prediction of a bioactive ligand with Align-it and ePharmaLib T00054 gxy.io/GTN:T00054 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/zauberkugel/tutorial.html 2022-02-15 2024-06-14 10 True False False True rdconf, split_file_to_collection, sort1, openbabel_addh, tp_cat, ctb_alignit Galaxy Canada 0 1577 2165 10.083333 0
Computational Chemistry Virtual screening of the SARS-CoV-2 main protease with rxDock and pose scoring T00049 gxy.io/GTN:T00049 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/covid19-docking/tutorial.html 2020-03-27 2023-11-09 10 True False False True rxdock_rbcavity, ctb_frankenstein_ligand, split_file_to_collection, rxdock_rbdock, openbabel_compound_convert, rdock_rbcavity, xchem_transfs_scoring, collapse_dataset, xchem_pose_scoring, enumerate_charges, sucos_max_score, rdock_rbdock 0 3508 5587 9.016667 0
Computational Chemistry Setting up molecular systems T00053 gxy.io/GTN:T00053 https://training.galaxyproject.org//topics/computational-chemistry/tutorials/setting-up-molecular-systems/tutorial.html 2019-06-03 2023-11-09 14 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2126 2799 11.150000 0
Contributing to the Galaxy Training Material Overview of the Galaxy Training Material S00042 gxy.io/GTN:S00042 https://training.galaxyproject.org//topics/contributing/tutorials/introduction/slides.html 2017-06-25 2025-03-14 2 False True False False 0 4427230 10050008 2.000000 0
Contributing to the Galaxy Training Material Preview the GTN website as you edit your training material T00484 gxy.io/GTN:T00484 https://training.galaxyproject.org//topics/contributing/tutorials/rendering_gtn/tutorial.html 2025-03-14 2026-02-04 4 True False True False 0 835 1064 13.933333 0
Contributing to the Galaxy Training Material FAIR-by-Design methodology T00465 gxy.io/GTN:T00465 https://training.galaxyproject.org//topics/contributing/tutorials/fair-by-design/tutorial.html 2024-10-17 2026-10-08 3 True False False False 0 143 152 8.333333 0
Contributing to the Galaxy Training Material Creating a new tutorial T00057 gxy.io/GTN:T00057 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial/tutorial.html Read pre-processing, Sequence file editing, Data handling, Sequence trimming, Primer removal, Read mapping 2018-06-20 2026-10-16 34 True False True True random_lines1, tp_sed_tool, bowtie2, seqtk_subseq, Filter1, c3s, fastq_to_tabular, tp_cut_tool, tp_sorted_uniq, bam_to_sam, Cut1, tp_cat, cutadapt 0 2181 3077 13.233333 0
Contributing to the Galaxy Training Material Single Cell Publication - Data Analysis T00469 gxy.io/GTN:T00469 https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-data/tutorial.html 2024-11-07 2024-11-07 1 True False False False 0 179 183 23.166667 0
Contributing to the Galaxy Training Material Single Cell Publication - Data Plotting T00470 gxy.io/GTN:T00470 https://training.galaxyproject.org//topics/contributing/tutorials/meta-analysis-plot/tutorial.html 2024-11-07 2024-11-07 1 True False False False 0 127 127 12.916667 0
FAIR Data, Workflows, and Research FAIR Galaxy Training Material T00350 gxy.io/GTN:T00350 https://training.galaxyproject.org//topics/fair/tutorials/fair-gtn/tutorial.html 2023-05-30 2026-09-23 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 290 329 18.066667 0
Contributing to the Galaxy Training Material Creating content in Markdown T00058 gxy.io/GTN:T00058 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-content/tutorial.html Validation, Sequencing quality control 2017-06-25 2025-04-08 85 True False False False multiqc, upload1 0 4180 10248 7.400000 0
Contributing to the Galaxy Training Material Creating Slides S00040 gxy.io/GTN:S00040 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-slides/slides.html 2018-06-13 2024-11-08 17 False True True False 0 4427230 10050009 2.000000 0
Contributing to the Galaxy Training Material Updating tool versions in a tutorial T00474 gxy.io/GTN:T00474 https://training.galaxyproject.org//topics/contributing/tutorials/updating_tutorial/tutorial.html 2024-11-29 2024-11-29 1 True False False False 0 220 242 26.533333 0
Contributing to the Galaxy Training Material Contributing to the Galaxy Training Network with GitHub T00483 gxy.io/GTN:T00483 https://training.galaxyproject.org//topics/contributing/tutorials/github-contribution/tutorial.html 2017-06-12 2025-03-14 2 True True False False 0 4427539 10050342 12.616667 0
Contributing to the Galaxy Training Material Generating PDF artefacts of the website T00063 gxy.io/GTN:T00063 https://training.galaxyproject.org//topics/contributing/tutorials/generating-pdf/tutorial.html 2018-06-04 2023-11-09 12 True False False False 0 146 164 19.433333 0
Contributing to the Galaxy Training Material Creating Interactive Galaxy Tours T00061 gxy.io/GTN:T00061 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-tours/tutorial.html 2017-06-25 2025-04-08 13 True False False False 0 396 554 12.816667 0
Contributing to the Galaxy Training Material GTN Metadata T00070 gxy.io/GTN:T00070 https://training.galaxyproject.org//topics/contributing/tutorials/schemas/tutorial.html 2022-06-02 2024-10-15 8 True False False False 0 358 446 19.350000 0
Contributing to the Galaxy Training Material Updating diffs in admin training T00055 gxy.io/GTN:T00055 https://training.galaxyproject.org//topics/contributing/tutorials/admin-knitting/tutorial.html 2021-06-07 2023-11-23 9 True False False False 0 146 188 20.150000 0
Contributing to the Galaxy Training Material Adding auto-generated video to your slides T00071 gxy.io/GTN:T00071 https://training.galaxyproject.org//topics/contributing/tutorials/slides-with-video/tutorial.html 2020-10-20 2023-11-09 12 True False False False 0 365 448 19.316667 0
Contributing to the Galaxy Training Material Principles of learning and how they apply to training and teaching T00067 gxy.io/GTN:T00067 https://training.galaxyproject.org//topics/contributing/tutorials/learning-principles/tutorial.html 2022-09-23 2025-03-11 17 True False False False 0 6115 7278 2.066667 0
Contributing to the Galaxy Training Material Including a new topic T00056 gxy.io/GTN:T00056 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-topic/tutorial.html 2018-06-04 2025-12-01 33 True False False False 0 1398 1862 4.733333 0
Contributing to the Galaxy Training Material Contributing with GitHub via its interface T00065 gxy.io/GTN:T00065 https://training.galaxyproject.org//topics/contributing/tutorials/github-interface-contribution/tutorial.html 2018-06-12 2023-11-09 17 True False False False 0 786 1139 13.033333 0
Contributing to the Galaxy Training Material Design and plan session, course, materials T00062 gxy.io/GTN:T00062 https://training.galaxyproject.org//topics/contributing/tutorials/design/tutorial.html 2022-09-23 2025-03-11 12 True False False False 0 842 1068 9.583333 0
Contributing to the Galaxy Training Material Tools, Data, and Workflows for tutorials T00060 gxy.io/GTN:T00060 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-technical/tutorial.html 2017-06-25 2025-04-08 26 True False False False 0 682 880 17.116667 0
Contributing to the Galaxy Training Material Teaching Python T00068 gxy.io/GTN:T00068 https://training.galaxyproject.org//topics/contributing/tutorials/python/tutorial.html 2022-10-19 2023-11-23 4 True False False False 0 463 780 14.183333 0
Contributing to the Galaxy Training Material Adding Quizzes to your Tutorial T00059 gxy.io/GTN:T00059 https://training.galaxyproject.org//topics/contributing/tutorials/create-new-tutorial-quiz/tutorial.html 2022-05-19 2022-10-18 3 True False False False 0 195 214 11.683333 0
Variant Analysis Mutation calling, viral genome reconstruction and lineage/clade assignment from SARS-CoV-2 sequencing data T00316 gxy.io/GTN:T00316 https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2-variant-discovery/tutorial.html Methylation analysis, Variant calling, Variant classification, Tree-based sequence alignment 2021-06-30 2025-03-28 18 True False True False datamash_ops, Filter1, upload1, pangolin, fasta_regex_finder, nextclade Galaxy Europe, Galaxy Main (US), Galaxy Canada 0 8005 13971 7.533333 0
Variant Analysis From NCBI's Sequence Read Archive (SRA) to Galaxy: SARS-CoV-2 variant analysis T00315 gxy.io/GTN:T00315 https://training.galaxyproject.org//topics/variant-analysis/tutorials/sars-cov-2/tutorial.html Generation, Sequence alignment, Genome indexing, Sequence contamination filtering, Formatting, Validation, Data handling, SNP detection, Sequencing quality control, Read mapping 2020-06-24 2024-06-14 16 True False True True multiqc, fastp, fasterq_dump, Filter1, samtools_stats, tp_cut_tool, lofreq_indelqual, lofreq_call, snpSift_extractFields, snpeff_sars_cov_2, Grep1, picard_MarkDuplicates, bwa_mem, lofreq_viterbi Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 14596 21666 6.450000 0
Sequence Analysis Removal of human reads from SARS-CoV-2 sequencing data T00236 gxy.io/GTN:T00236 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/human-reads-removal/tutorial.html Genome indexing, Generation, Sequence file editing, Data handling, Read mapping, Sequence alignment 2021-08-04 2023-11-09 5 True False False True __UNZIP_COLLECTION__, seqtk_subseq, trimmomatic, samtools_fastx, __ZIP_COLLECTION__, Grep1, tp_replace_in_line, bwa_mem Galaxy Main (US), Galaxy France Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4383 6123 9.383333 0
Using Galaxy and Managing your Data Automating Galaxy workflows using the command line T00162 gxy.io/GTN:T00162 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-automation/tutorial.html Tree-based sequence alignment, Visualisation, Sequence contamination filtering, Validation, Sequencing quality control, Read mapping, Variant classification 2021-06-08 2025-12-18 11 True False True True falco, multiqc, fastp, snpSift_filter, bcftools_consensus, collapse_dataset, pangolin, compose_text_param Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland 0 3403 4209 9.066667 0
Using Galaxy and Managing your Data Submitting sequence data to ENA T00159 gxy.io/GTN:T00159 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-data-to-ena/tutorial.html 2021-08-10 2026-10-08 11 True True False True ena_consensus_submit, ena_upload Galaxy Belgium 0 4098286 8959803 8.600000 0
Using Galaxy and Managing your Data SRA Aligned Read Format to Speed Up SARS-CoV-2 data Analysis T00155 gxy.io/GTN:T00155 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/ncbi-sarf/tutorial.html SNP detection, Data handling 2021-05-31 2024-06-14 12 True True True False query_tabular, fastq_to_fasta_python, fasterq_dump, snpeff_sars_cov_2, jq, tp_cat, fastq_dump Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Europe, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 4208846 9295929 11.516667 0
Sequence Analysis SARS-CoV-2 Viral Sample Alignment and Variant Visualization T00356 gxy.io/GTN:T00356 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/sars-with-galaxy-on-anvil/tutorial.html Genome indexing, Generation, Genome visualisation, Sequence composition calculation, Statistical calculation, Sequencing quality control, Read mapping, Sequence alignment 2023-07-10 2026-09-23 3 True False False False bwa_mem, jbrowse, fastqc Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium, Galaxy Norway Galaxy Switzerland, Galaxy Canada 0 1870 2352 11.416667 0
Foundations of Data Science A (very) brief history of genomics T00382 gxy.io/GTN:T00382 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture1/tutorial.html 2024-01-09 2024-02-20 2 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2692748 5149042 36.150000 0
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Foundations of Data Science R basics in Galaxy T00103 gxy.io/GTN:T00103 https://training.galaxyproject.org//topics/data-science/tutorials/r-basics/tutorial.html 2019-10-08 2024-06-14 11 True False True False interactive_tool_rstudio Galaxy Europe 0 3241 4302 9.450000 0
Foundations of Data Science Python - Warm-up for statistics and machine learning T00485 gxy.io/GTN:T00485 https://training.galaxyproject.org//topics/data-science/tutorials/python-warmup-stat-ml/tutorial.html 2025-03-11 2025-03-11 1 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 342 400 8.250000 0
Foundations of Data Science Advanced R in Galaxy T00102 gxy.io/GTN:T00102 https://training.galaxyproject.org//topics/data-science/tutorials/r-advanced/tutorial.html 2019-12-09 2024-10-15 11 True False True False interactive_tool_rstudio Galaxy Europe 0 1828 2768 11.500000 0
Foundations of Data Science Advanced Python T00081 gxy.io/GTN:T00081 https://training.galaxyproject.org//topics/data-science/tutorials/python-advanced-np-pd/tutorial.html 2021-11-08 2026-09-23 8 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 716 905 13.583333 0
Foundations of Data Science Introduction to sequencing with Python (part one) T00397 gxy.io/GTN:T00397 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture2/tutorial.html 2024-01-23 2024-02-20 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 448 522 13.416667 0
Foundations of Data Science Data visualisation Olympics - Visualization in R T00353 gxy.io/GTN:T00353 https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-viz-r/tutorial.html 2023-06-16 2024-05-07 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 870 987 10.250000 0
Foundations of Data Science Python - Functions T00089 gxy.io/GTN:T00089 https://training.galaxyproject.org//topics/data-science/tutorials/python-functions/tutorial.html 2022-04-25 2023-02-13 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1133 1311 7.566667 0
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Foundations of Data Science dplyr & tidyverse for data processing T00104 gxy.io/GTN:T00104 https://training.galaxyproject.org//topics/data-science/tutorials/r-dplyr/tutorial.html 2021-10-20 2026-09-23 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 817 1008 7.900000 0
Foundations of Data Science Introduction to sequencing with Python (part two) T00398 gxy.io/GTN:T00398 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture3/tutorial.html 2024-01-23 2024-02-20 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 239 254 4.516667 0
Foundations of Data Science Data Manipulation Olympics - SQL T00078 gxy.io/GTN:T00078 https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-sql/tutorial.html 2023-06-16 2024-05-07 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1030 1132 2.683333 0
Foundations of Data Science Python - Basic Types & Type Conversion T00099 gxy.io/GTN:T00099 https://training.galaxyproject.org//topics/data-science/tutorials/python-types/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 520 799 12.400000 0
Foundations of Data Science Introduction to sequencing with Python (part three) T00404 gxy.io/GTN:T00404 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture4/tutorial.html 2024-02-06 2024-02-20 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 315 338 17.316667 0
Foundations of Data Science Data Manipulation Olympics - JQ T00352 gxy.io/GTN:T00352 https://training.galaxyproject.org//topics/data-science/tutorials/data-manipulation-olympics-jq/tutorial.html 2023-06-16 2024-05-07 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 581 635 9.983333 0
Foundations of Data Science Python - Lists & Strings & Dictionaries T00091 gxy.io/GTN:T00091 https://training.galaxyproject.org//topics/data-science/tutorials/python-iterables/tutorial.html 2022-04-25 2024-06-25 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2508 2908 3.516667 0
Foundations of Data Science Python - Flow Control T00088 gxy.io/GTN:T00088 https://training.galaxyproject.org//topics/data-science/tutorials/python-flow/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 414 468 18.800000 0
Foundations of Data Science Introduction to sequencing with Python (part four) T00411 gxy.io/GTN:T00411 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture5/tutorial.html 2024-02-13 2024-02-20 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 244 260 4.033333 0
Foundations of Data Science Data manipulation with Pandas T00419 gxy.io/GTN:T00419 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture6/tutorial.html 2024-02-20 2025-02-27 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 163 175 15.833333 0
Foundations of Data Science Python - Loops T00093 gxy.io/GTN:T00093 https://training.galaxyproject.org//topics/data-science/tutorials/python-loops/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 578 663 9.050000 0
Foundations of Data Science Python - Files & CSV T00087 gxy.io/GTN:T00087 https://training.galaxyproject.org//topics/data-science/tutorials/python-files/tutorial.html 2022-04-25 2023-02-13 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 756 853 6.150000 0
Foundations of Data Science Versioning your code and data with git T00425 gxy.io/GTN:T00425 https://training.galaxyproject.org//topics/data-science/tutorials/gnmx-lecture7/tutorial.html 2024-03-12 2024-03-12 1 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 68 69 75.783333 0
Foundations of Data Science Python - Try & Except T00086 gxy.io/GTN:T00086 https://training.galaxyproject.org//topics/data-science/tutorials/python-exceptions/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 727 813 4.466667 0
Foundations of Data Science Python - Introductory Graduation T00084 gxy.io/GTN:T00084 https://training.galaxyproject.org//topics/data-science/tutorials/python-basics-recap/tutorial.html 2022-04-25 2023-02-13 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 331 376 19.583333 0
Foundations of Data Science Python - Testing T00098 gxy.io/GTN:T00098 https://training.galaxyproject.org//topics/data-science/tutorials/python-testing/tutorial.html 2022-10-19 2023-02-13 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 317 341 15.133333 0
Foundations of Data Science Conda Environments For Software Development T00085 gxy.io/GTN:T00085 https://training.galaxyproject.org//topics/data-science/tutorials/python-conda/tutorial.html 2022-10-19 2023-05-18 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 903 959 4.883333 0
Foundations of Data Science Python - Type annotations T00100 gxy.io/GTN:T00100 https://training.galaxyproject.org//topics/data-science/tutorials/python-typing/tutorial.html 2022-10-19 2023-02-13 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 731 769 7.566667 0
Foundations of Data Science Python - Argparse T00082 gxy.io/GTN:T00082 https://training.galaxyproject.org//topics/data-science/tutorials/python-argparse/tutorial.html 2022-04-25 2023-01-24 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1500 1620 2.883333 0
Foundations of Data Science Virtual Environments For Software Development T00101 gxy.io/GTN:T00101 https://training.galaxyproject.org//topics/data-science/tutorials/python-venv/tutorial.html 2022-10-19 2023-05-18 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 366 389 9.966667 0
Foundations of Data Science Python - Globbing T00090 gxy.io/GTN:T00090 https://training.galaxyproject.org//topics/data-science/tutorials/python-glob/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 667 710 7.866667 0
Foundations of Data Science Python - Subprocess T00097 gxy.io/GTN:T00097 https://training.galaxyproject.org//topics/data-science/tutorials/python-subprocess/tutorial.html 2022-04-25 2023-02-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1313 1504 4.433333 0
Foundations of Data Science Python - Coding Style T00092 gxy.io/GTN:T00092 https://training.galaxyproject.org//topics/data-science/tutorials/python-linting/tutorial.html 2022-11-03 2023-05-18 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 356 371 18.133333 0
Foundations of Data Science Python - Multiprocessing T00095 gxy.io/GTN:T00095 https://training.galaxyproject.org//topics/data-science/tutorials/python-multiprocessing/tutorial.html 2022-10-19 2023-11-16 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1013 1078 4.383333 0
Foundations of Data Science Learning about one gene across biological resources and formats T00359 gxy.io/GTN:T00359 https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-gene/tutorial.html 2023-09-07 2026-09-23 5 True True True False ncbi_blastp_wrapper Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Switzerland, Galaxy Norway 0 2850078 5499498 22.216667 0
Foundations of Data Science CLI Educational Game - Bashcrawl T00075 gxy.io/GTN:T00075 https://training.galaxyproject.org//topics/data-science/tutorials/cli-bashcrawl/tutorial.html 2021-09-30 2024-10-15 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2496 2812 2.783333 0
Foundations of Data Science SQL Educational Game - Murder Mystery T00108 gxy.io/GTN:T00108 https://training.galaxyproject.org//topics/data-science/tutorials/sql-game/tutorial.html 2021-10-11 2023-11-23 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 857 926 6.150000 0
Foundations of Data Science SQL with Python T00109 gxy.io/GTN:T00109 https://training.galaxyproject.org//topics/data-science/tutorials/sql-python/tutorial.html 2021-10-11 2023-11-16 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 604 788 9.400000 0
Foundations of Data Science Basics of using Git from the Command Line T00079 gxy.io/GTN:T00079 https://training.galaxyproject.org//topics/data-science/tutorials/git-cli/tutorial.html 2022-06-16 2023-11-16 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 257 505 12.783333 0
Foundations of Data Science Advanced SQL T00106 gxy.io/GTN:T00106 https://training.galaxyproject.org//topics/data-science/tutorials/sql-advanced/tutorial.html 2021-10-11 2024-12-13 9 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1628 2005 3.983333 0
Foundations of Data Science Introduction to SQL T00107 gxy.io/GTN:T00107 https://training.galaxyproject.org//topics/data-science/tutorials/sql-basic/tutorial.html 2021-10-11 2024-12-13 8 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 832 1005 9.633333 0
Foundations of Data Science Make & Snakemake T00105 gxy.io/GTN:T00105 https://training.galaxyproject.org//topics/data-science/tutorials/snakemake/tutorial.html 2021-11-18 2026-09-23 8 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3833 4845 2.816667 0
Foundations of Data Science One protein along the UniProt page T00360 gxy.io/GTN:T00360 https://training.galaxyproject.org//topics/data-science/tutorials/online-resources-protein/tutorial.html 2023-09-07 2026-03-30 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 794 847 6.800000 0
Foundations of Data Science Advanced CLI in Galaxy T00074 gxy.io/GTN:T00074 https://training.galaxyproject.org//topics/data-science/tutorials/cli-advanced/tutorial.html 2021-09-30 2024-10-15 11 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1186 1455 10.216667 0
Foundations of Data Science CLI basics T00076 gxy.io/GTN:T00076 https://training.galaxyproject.org//topics/data-science/tutorials/cli-basics/tutorial.html 2021-09-30 2024-10-15 10 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1441 1955 10.466667 0
Foundations of Data Science SQL with R T00110 gxy.io/GTN:T00110 https://training.galaxyproject.org//topics/data-science/tutorials/sql-r/tutorial.html 2021-10-11 2023-11-16 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 724 885 7.416667 0
Foundations of Data Science Variant Calling Workflow T00073 gxy.io/GTN:T00073 https://training.galaxyproject.org//topics/data-science/tutorials/bash-variant-calling/tutorial.html 2022-07-07 2023-10-23 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 10641 13801 4.100000 0
Foundations of Data Science Version Control with Git T00072 gxy.io/GTN:T00072 https://training.galaxyproject.org//topics/data-science/tutorials/bash-git/tutorial.html 2022-07-06 2023-10-23 6 True False False False interactive_tool_rstudio Galaxy Europe 0 479 717 7.933333 0
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Development in Galaxy Architecture 07 - Galaxy Task Management with Celery S00155 gxy.io/GTN:S00155 https://training.galaxyproject.org//topics/dev/tutorials/architecture-tasks/slides.html 2026-02-19 2026-02-19 1 False True False False 0 932716 1573628 1.400000 0
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Development in Galaxy Scripting Galaxy using the API and BioBlend T00111 gxy.io/GTN:T00111 https://training.galaxyproject.org//topics/dev/tutorials/bioblend-api/tutorial.html 2017-01-17 2023-11-16 22 True True True False 0 4428159 10051189 15.000000 0
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Development in Galaxy Architecture 09 - Galaxy Plugin Architecture S00150 gxy.io/GTN:S00150 https://training.galaxyproject.org//topics/dev/tutorials/architecture-plugins/slides.html 2026-02-19 2026-02-19 1 False True False False 0 932716 1573632 1.400000 0
Development in Galaxy Setting up a dev Onedata instance T00486 gxy.io/GTN:T00486 https://training.galaxyproject.org//topics/dev/tutorials/onedata-dev-instance/tutorial.html 2025-03-24 2025-04-08 2 True False False False 0 116 120 29.566667 0
Development in Galaxy Contributing to BioBlend as a developer T00112 gxy.io/GTN:T00112 https://training.galaxyproject.org//topics/dev/tutorials/bioblend-dev/tutorial.html 2021-05-25 2023-11-09 8 True False False False 0 368 459 18.000000 0
Development in Galaxy Debugging Galaxy T00115 gxy.io/GTN:T00115 https://training.galaxyproject.org//topics/dev/tutorials/debugging/tutorial.html 2021-06-15 2026-02-19 16 True False False False 0 764 1371 11.766667 0
Development in Galaxy nb2workflow: Generating Galaxy Tools From Jupyter Notebooks T00567 gxy.io/GTN:T00567 https://training.galaxyproject.org//topics/dev/tutorials/tool-from-notebook/tutorial.html 2025-12-04 2025-12-04 1 True False False False 0 137 144 10.716667 0
Development in Galaxy ToolFactory: Generating Tools From More Complex Scripts T00119 gxy.io/GTN:T00119 https://training.galaxyproject.org//topics/dev/tutorials/tool-generators-advanced/tutorial.html 2021-05-26 2024-09-27 12 True False True False 0 565 651 13.683333 0
Development in Galaxy Galaxy Interactive Tools T00116 gxy.io/GTN:T00116 https://training.galaxyproject.org//topics/dev/tutorials/interactive-tools/tutorial.html 2022-03-02 2026-10-08 11 True False False False 0 1565 2025 9.000000 0
Development in Galaxy Understanding Galaxy Data Managers T00596 gxy.io/GTN:T00596 https://training.galaxyproject.org//topics/dev/tutorials/data-manager-architecture/tutorial.html 2026-10-06 2026-10-06 1 True False False False 0 20 21 3.816667 0
Development in Galaxy Contributing a New Feature to Galaxy Core T00113 gxy.io/GTN:T00113 https://training.galaxyproject.org//topics/dev/tutorials/core-contributing/tutorial.html 2021-06-08 2026-02-19 11 True False False False 0 913 1292 14.066667 0
Development in Galaxy Creating Galaxy tools from Conda Through Deployment T00117 gxy.io/GTN:T00117 https://training.galaxyproject.org//topics/dev/tutorials/tool-from-scratch/tutorial.html 2021-06-15 2024-10-08 15 True False True False 0 3142 4914 6.133333 0
Development in Galaxy Adding and updating best practice metadata for Galaxy tools using the bio.tools registry T00421 gxy.io/GTN:T00421 https://training.galaxyproject.org//topics/dev/tutorials/tool-annotation/tutorial.html 2024-03-06 2024-11-06 5 True False False False 0 401 460 14.600000 0
Development in Galaxy Writing Automated Tests for Galaxy T00123 gxy.io/GTN:T00123 https://training.galaxyproject.org//topics/dev/tutorials/writing_tests/tutorial.html 2022-07-15 2026-02-19 7 True False False False 0 385 813 17.816667 0
Development in Galaxy Data source integration T00114 gxy.io/GTN:T00114 https://training.galaxyproject.org//topics/dev/tutorials/data-source-integration/tutorial.html 2016-09-30 2022-10-18 15 True False False False 0 312 424 12.283333 0
Digital Humanities Introduction to Digital Humanities in Galaxy T00557 gxy.io/GTN:T00557 https://training.galaxyproject.org//topics/digital-humanities/tutorials/introduction_to_dh/tutorial.html 2025-09-11 2026-09-23 11 True False False True tp_find_and_replace, diff, wordcloud, tp_grep_tool, Remove beginning1, tp_replace_in_line Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 491 578 9.833333 0
Digital Humanities Montreal Forced Aligner T00585 gxy.io/GTN:T00585 https://training.galaxyproject.org//topics/digital-humanities/tutorials/mfa_tutorial/tutorial.html 2026-07-22 2026-09-23 4 True False False True unzip, mfa_align, mfa_find_oovs, mfa_merge, mfa_g2p Galaxy Europe 0 156 167 6.116667 0
Digital Humanities Transcribing Audio and Video files with Automated Speech Recognition T00577 gxy.io/GTN:T00577 https://training.galaxyproject.org//topics/digital-humanities/tutorials/Whisper_speech_recognition/tutorial.html 2026-04-08 2026-09-23 2 True False False True tp_find_and_replace, tp_grep_tool, whisperx Galaxy Europe, Galaxy Switzerland, Galaxy Belgium 0 236 254 8.383333 0
Digital Humanities Text-Mining Differences in Chinese Newspaper Articles T00530 gxy.io/GTN:T00530 https://training.galaxyproject.org//topics/digital-humanities/tutorials/text_mining_chinese/tutorial.html 2025-02-28 2026-09-23 8 True False False True datamash_ops, Add_a_column1, diff, wordcloud, tp_sort_header_tool, Grep1, tp_replace_in_line, Cut1 Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 472 510 7.766667 0
Digital Humanities OpenRefine Tutorial for researching cultural data T00560 gxy.io/GTN:T00560 https://training.galaxyproject.org//topics/digital-humanities/tutorials/open-refine-tutorial/tutorial.html 2025-09-24 2026-09-23 4 True False False True datamash_ops, tp_head_tool, wordcloud, barchart_gnuplot, interactive_tool_openrefine, tp_grep_tool, tp_sort_header_tool, compose_text_param, Remove beginning1, Cut1, param_value_from_file, filter_tabular, regexColumn1 Galaxy Europe 0 396 436 11.900000 0
Digital Humanities Analysing Solar Eclipse Frequency with a Galaxy Workflow T00593 gxy.io/GTN:T00593 https://training.galaxyproject.org//topics/digital-humanities/tutorials/solar-eclipse-frequency/tutorial.html 2026-09-21 2026-10-07 4 True False False True Filter1, tp_awk_tool, tp_sort_header_tool, Convert characters1, tp_sorted_uniq, compose_text_param, tp_replace_in_line Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium 0 62 73 6.400000 0
Digital Humanities Text-Mining articles with GROBID T00590 gxy.io/GTN:T00590 https://training.galaxyproject.org//topics/digital-humanities/tutorials/grobid/tutorial.html 2026-08-13 2026-10-14 2 True False False False tesseract, grobid_dataset_annotate, grobid_grobid, Grep1 Galaxy Europe 0 59 59 0.100000 0
Ecology Object detection with YOLO T00580 gxy.io/GTN:T00580 https://training.galaxyproject.org//topics/ecology/tutorials/yolo_predict_deepsea/tutorial.html 2026-05-06 2026-05-08 3 True False False True yolo_predict, yolo_training, unzip Galaxy Europe Galaxy Canada, Galaxy Belgium 0 206 234 27.916667 0
Ecology Champs blocs indicators T00127 gxy.io/GTN:T00127 https://training.galaxyproject.org//topics/ecology/tutorials/champs-blocs/tutorial.html 2023-01-04 2026-05-07 13 True False False True cb_div, cb_dissim, cb_ivr, cb_qecb, cb_eco 0 280 438 25.683333 0
Ecology RAD-Seq to construct genetic maps T00130 gxy.io/GTN:T00130 https://training.galaxyproject.org//topics/ecology/tutorials/genetic-map-rad-seq/tutorial.html Data handling 2017-02-14 2026-09-23 15 True False False True stacks_genotypes, stacks_denovomap Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 1063 1425 9.500000 0
Ecology Checking expected species and contamination in bacterial isolate T00423 gxy.io/GTN:T00423 https://training.galaxyproject.org//topics/ecology/tutorials/bacterial-isolate-species-contamination-checking/tutorial.html Whole genome sequencing, Genomics, Microbiology, Microbial ecology Taxonomic classification, Cross-assembly, Expression analysis, Statistical calculation 2024-03-04 2026-04-08 6 True False False True est_abundance, kraken2, upload1, recentrifuge Galaxy Europe, Galaxy France Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 1196 1566 9.383333 0
Ecology Creating FAIR Quality assessment reports and draft of Data Papers from EML metadata with MetaShRIMPS T00399 gxy.io/GTN:T00399 https://training.galaxyproject.org//topics/ecology/tutorials/Metashrimps_tutorial/tutorial.html 2024-01-22 2026-09-23 8 True False False False interactive_tool_metashrimps Galaxy Europe 0 212 224 9.633333 0
Ecology RAD-Seq de-novo data analysis T00128 gxy.io/GTN:T00128 https://training.galaxyproject.org//topics/ecology/tutorials/de-novo-rad-seq/tutorial.html Sequencing quality control, Sequence composition calculation, Statistical calculation, Data handling 2017-02-14 2026-09-23 16 True False False True stacks_denovomap, stacks_populations, stacks_procrad, fastqc Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy Canada, Galaxy Norway 0 2919 4535 5.900000 0
Ecology Cleaning GBIF data for the use in Ecology T00129 gxy.io/GTN:T00129 https://training.galaxyproject.org//topics/ecology/tutorials/gbif_cleaning/tutorial.html 2022-10-28 2025-06-03 6 True False False True Count1, Summary_Statistics1, Filter1, spocc_occ, gdal_ogr2ogr Galaxy Europe, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 957 1138 5.966667 0
Ecology Visualization of Climate Data using  NetCDF xarray Map Plotting T00136 gxy.io/GTN:T00136 https://training.galaxyproject.org//topics/ecology/tutorials/x-array-map-plot/tutorial.html 2022-10-26 2026-09-23 10 True False False True xarray_coords_info, cdo_operations, xarray_metadata_info, graphicsmagick_image_montage, xarray_mapplot Galaxy Europe, Galaxy Belgium Galaxy Canada 0 2764 3159 3.616667 0
Ecology Regional GAM T00134 gxy.io/GTN:T00134 https://training.galaxyproject.org//topics/ecology/tutorials/regionalGAM/tutorial.html Ecology Visualisation 2019-07-04 2026-09-23 20 True False False True Count1, regionalgam_glmmpql, regionalgam_plot_trend, ggplot2_point, csv2tab_R, Filter1, tab2csv_R, mergeCols1, tp_awk_tool, flight-curve, regionalgam_ab_index, regionalgam_flight_curve, Remove beginning1, Paste1, regionalgam_gls, regexColumn1, regionalgam_autocor_acf 0 460 579 15.616667 0
Ecology Preparing genomic data for phylogeny reconstruction T00132 gxy.io/GTN:T00132 https://training.galaxyproject.org//topics/ecology/tutorials/phylogeny-data-prep/tutorial.html Sequence analysis, Multiple sequence alignment, Sequence clustering, Genetic variation analysis, Sequence trimming, Genome annotation, Sequence assembly validation 2022-10-21 2026-09-23 6 True False False True regex1, phykit_alignment_based, proteinortho_grab_proteins, Filter1, busco, clustalw, collapse_dataset, proteinortho, tp_replace_in_line, funannotate_predict, glimmer_gbk_to_orf, repeatmasker_wrapper, clipkit Galaxy Belgium 0 2658 3569 6.866667 0
Ecology Sentinel 2 biodiversity T00333 gxy.io/GTN:T00333 https://training.galaxyproject.org//topics/ecology/tutorials/remote-sensing/tutorial.html 2023-04-13 2025-12-08 7 True False False True srs_diversity_maps, srs_preprocess_s2, srs_process_data, srs_spectral_indices, srs_pca, srs_global_indices Galaxy Europe, Galaxy France, Galaxy Canada 0 780 968 10.333333 0
Ecology Metabarcoding/eDNA through Obitools T00124 gxy.io/GTN:T00124 https://training.galaxyproject.org//topics/ecology/tutorials/Obitools-metabarcoding/tutorial.html Sequencing quality control, Sequence composition calculation, Statistical calculation 2022-02-28 2026-09-23 14 True False True True obi_grep, obi_annotate, fastqc, Filter1, join1, unzip, obi_tab, obi_uniq, seq_filter_by_id, obi_clean, wc_gnu, obi_ngsfilter, ncbi_blastn_wrapper, fastq_groomer, Cut1, obi_stat, obi_illumina_pairend Galaxy Europe, Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy France, Galaxy Canada 0 5336 7307 4.283333 0
Ecology Marine Omics identifying biosynthetic gene clusters T00450 gxy.io/GTN:T00450 https://training.galaxyproject.org//topics/ecology/tutorials/marine_omics_bgc/tutorial.html Genome annotation, Sequence motif recognition, Protein feature detection 2024-08-19 2025-06-03 3 True False False True regex1, interproscan, SanntiS_marine, sanntis_marine, prodigal 0 403 443 18.416667 0
Ecology Phylodiversity analysis quick tutorial T00538 gxy.io/GTN:T00538 https://training.galaxyproject.org//topics/ecology/tutorials/phylodiversity_workflow/tutorial.html 2025-06-06 2026-09-23 3 True False False False phylo_index, phylogenetic_occupancy_matcher, crsconverter, estimate_endem Galaxy Europe Galaxy France, Galaxy Canada 0 223 257 26.733333 0
Ecology Data submission using ENA upload Tool T00487 gxy.io/GTN:T00487 https://training.galaxyproject.org//topics/ecology/tutorials/ENA_Biodiv_submission/tutorial.html Visualisation, Read pre-processing, Validation, Primer removal, Sequence trimming, Sequencing quality control, Read mapping 2024-12-13 2026-07-24 4 True False False False regex1, falco, multiqc, collection_element_identifiers, fastq_to_fasta_python, fastq_filter, ab1_fastq_converter, __FILTER_EMPTY_DATASETS__, bg_uniq, ncbi_blastn_wrapper, Paste1, __RELABEL_FROM_FILE__, cutadapt, fastq_groomer Galaxy Europe 0 522 547 5.350000 0
Ecology SAM3 – AI-based Semantic Segmentation of marine biodiversity Images and Videos T00579 gxy.io/GTN:T00579 https://training.galaxyproject.org//topics/ecology/tutorials/SAM3/tutorial.html 2026-05-07 2026-05-12 3 True False False False interactive_tool_anylabeling, sam3_semantic_segmentation Galaxy Europe Galaxy France 0 317 357 13.983333 0
Ecology RAD-Seq Reference-based data analysis T00133 gxy.io/GTN:T00133 https://training.galaxyproject.org//topics/ecology/tutorials/ref-based-rad-seq/tutorial.html Generation, Sequence composition calculation, Sequence alignment, Genome indexing, Statistical calculation, Validation, Data handling, Sequencing quality control, Read mapping 2017-02-14 2026-09-23 17 True False False True Count1, multiqc, Summary_Statistics1, fastqc, Filter1, addValue, cat1, bwa, stacks_refmap, stacks_populations, tp_sort_header_tool, Convert characters1, stacks_procrad, Grep1, bwa_wrapper, tp_replace_in_line, Cut1, regex_replace 0 3865 5745 5.566667 0
Ecology Creating metadata using Ecological Metadata Language (EML) standard with EML Assembly Line functionalities T00422 gxy.io/GTN:T00422 https://training.galaxyproject.org//topics/ecology/tutorials/MetaShARK_tutorial/tutorial.html 2024-03-04 2026-09-23 10 True False False False interactive_tool_metashark Galaxy Europe, Galaxy France 0 413 479 5.183333 0
Ecology Taxonomic Analysis of eDNA T00536 gxy.io/GTN:T00536 https://training.galaxyproject.org//topics/ecology/tutorials/eDNA-taxonomic-analysis/tutorial.html Sequencing quality control, Sequence contamination filtering 2025-06-02 2026-09-23 4 True False False True Count1, ncbi_blastn_wrapper, fastp, cshl_fastq_to_fasta Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 966 1153 7.300000 0
Ecology Ecoregionalization workflow tutorial T00455 gxy.io/GTN:T00455 https://training.galaxyproject.org//topics/ecology/tutorials/Ecoregionalization_tutorial/tutorial.html 2024-09-16 2026-05-22 8 True False False True unzip, ecoregion_brt_analysis, ecoregion_clara_cluster, interactive_tool_jupyter_notebook, mergeCols1, tp_cut_tool, ecoregion_cluster_estimate, ecoregion_GeoNearestNeighbor, filter_tabular, ecoregion_taxa_seeker, ecoregion_eco_map, regexColumn1 Galaxy Europe 0 553 670 11.700000 0
Ecology Species distribution modeling T00135 gxy.io/GTN:T00135 https://training.galaxyproject.org//topics/ecology/tutorials/species-distribution-modeling/tutorial.html 2019-07-04 2026-05-07 19 True False False True Filter1, tp_find_and_replace, tp_cut_tool, interactive_tool_wallace, spocc_occ, tabular_to_csv Galaxy Europe, Galaxy France 0 3707 5436 4.700000 0
Ecology Biodiversity data exploration T00126 gxy.io/GTN:T00126 https://training.galaxyproject.org//topics/ecology/tutorials/biodiversity-data-exploration/tutorial.html 2022-03-01 2026-09-23 17 True False True True ecology_stat_presence_abs, ecology_homogeneity_normality, regexColumn1, ecology_presence_abs_abund, tp_cut_tool, ecology_beta_diversity, Remove beginning1, ecology_link_between_var, tool_anonymization Galaxy Europe, Galaxy Belgium Galaxy France, Galaxy Canada 0 1935 2646 12.033333 0
Ecology From NDVI data with OpenEO to time series visualisation with Holoviews T00400 gxy.io/GTN:T00400 https://training.galaxyproject.org//topics/ecology/tutorials/ndvi_openeo/tutorial.html 2024-01-24 2024-06-29 3 True False False True interactive_tool_holoviz, interactive_tool_copernicus_notebook Galaxy Europe 0 335 384 14.050000 0
Ecology Obis marine indicators T00332 gxy.io/GTN:T00332 https://training.galaxyproject.org//topics/ecology/tutorials/obisindicators/tutorial.html Biodiversity, Ecology, Data mining 2023-04-11 2026-05-19 10 True False False True obis_data, obisindicators, tp_cut_tool Galaxy Europe, Galaxy Belgium Galaxy France, Galaxy Canada 0 477 572 13.416667 0
Ecology Compute and analyze biodiversity metrics with PAMPA toolsuite T00125 gxy.io/GTN:T00125 https://training.galaxyproject.org//topics/ecology/tutorials/PAMPA-toolsuite-tutorial/tutorial.html 2020-11-19 2026-09-23 25 True False True True Count1, regex1, pampa_glmcomm, datamash_transpose, tp_easyjoin_tool, Filter1, pampa_presabs, mergeCols1, tp_cut_tool, pampa_glmsp, tp_sort_header_tool, pampa_communitymetrics, pampa_plotglm, tp_cat, regexColumn1 Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada 0 1262 1639 11.550000 0
Ecology Life Traits Ecoregionalization workflow T00537 gxy.io/GTN:T00537 https://training.galaxyproject.org//topics/ecology/tutorials/ecoregiolifetraits/tutorial.html 2025-06-02 2026-05-07 4 True False False False WormsMeasurements, column_remove_by_header, ClaraGuess, unzip, Filter1, ecoregion_brt_analysis, tp_cut_tool, ecoregion_GeoNearestNeighbor, ecoregion_taxa_seeker, ecoregion_eco_map, regexColumn1 Galaxy Europe Galaxy France, Galaxy Canada 0 149 154 30.566667 0
Ecology Visualize EBV cube data with Panoply netCDF viewer T00131 gxy.io/GTN:T00131 https://training.galaxyproject.org//topics/ecology/tutorials/panoply_ebv/tutorial.html 2022-10-28 2026-05-07 10 True False False False interactive_tool_panoply Galaxy Europe, Galaxy Main (US), Galaxy France 0 392 461 11.016667 0
Ecology QGIS Web Feature Services T00367 gxy.io/GTN:T00367 https://training.galaxyproject.org//topics/ecology/tutorials/QGIS_Web_Feature_Services/tutorial.html 2023-10-11 2026-05-07 7 True False False False interactive_tool_qgis Galaxy Europe, Galaxy France 0 464 514 12.216667 0
Ecology Audio data annotation with NEAL (Nature + Energy Audio labeler) T00562 gxy.io/GTN:T00562 https://training.galaxyproject.org//topics/ecology/tutorials/NEAL_tutorial/tutorial.html 2025-10-14 2025-11-06 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 177 197 16.150000 0
Ecology Cleaning GBIF data using OpenRefine T00488 gxy.io/GTN:T00488 https://training.galaxyproject.org//topics/ecology/tutorials/openrefine_gbif/tutorial.html 2025-01-21 2026-05-07 7 True False False False interactive_tool_openrefine, regex1 Galaxy Europe, Galaxy France 0 349 406 7.450000 0
Statistics and Machine Learning Pretraining a Large Language Model (LLM) from Scratch on DNA Sequences T00520 gxy.io/GTN:T00520 https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-pretraining/tutorial.html 2025-04-17 2026-07-13 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2430 3021 4.400000 0
Statistics and Machine Learning Fine-tuning a LLM for DNA Sequence Classification T00519 gxy.io/GTN:T00519 https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-finetuning/tutorial.html 2025-04-17 2025-05-22 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1347 1669 4.216667 0
Statistics and Machine Learning Neural networks using Python T00526 gxy.io/GTN:T00526 https://training.galaxyproject.org//topics/statistics/tutorials/neural-networks-with-python/tutorial.html 2025-03-11 2025-03-11 1 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2044540 3533236 12.600000 0
Statistics and Machine Learning Predicting Mutation Impact with Zero-shot Learning using a pretrained DNA LLM T00523 gxy.io/GTN:T00523 https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-zeroshot-prediction/tutorial.html 2025-04-17 2025-05-22 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 515 594 9.116667 0
Statistics and Machine Learning Deep Learning (without Generative Artificial Intelligence) using Python T00517 gxy.io/GTN:T00517 https://training.galaxyproject.org//topics/statistics/tutorials/deep-learning-without-gai-with-python/tutorial.html 2025-03-11 2025-03-11 1 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2044541 3533235 29.050000 0
Statistics and Machine Learning Generating Artificial Yeast DNA Sequences using a DNA LLM T00521 gxy.io/GTN:T00521 https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-generation/tutorial.html 2025-04-17 2025-05-22 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 397 440 4.983333 0
Statistics and Machine Learning Optimizing DNA Sequences for Biological Functions using a DNA LLM T00522 gxy.io/GTN:T00522 https://training.galaxyproject.org//topics/statistics/tutorials/genomic-llm-sequence-optimization/tutorial.html 2025-04-17 2025-05-22 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 129 152 10.966667 0
Statistics and Machine Learning Regulations/standards for AI using DOME T00518 gxy.io/GTN:T00518 https://training.galaxyproject.org//topics/statistics/tutorials/dome/tutorial.html 2025-03-11 2025-05-19 3 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2044666 3533374 19.016667 0
Statistics and Machine Learning Foundational Aspects of Machine Learning using Python T00524 gxy.io/GTN:T00524 https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-python/tutorial.html 2025-03-11 2025-05-19 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1544 1868 5.333333 0
Teaching and Hosting Galaxy Training Motivation and Demotivation T00282 gxy.io/GTN:T00282 https://training.galaxyproject.org//topics/teaching/tutorials/motivation_demotivation/tutorial.html 2022-09-23 2025-03-11 11 True False False False 0 2165 2564 3.366667 0
Teaching and Hosting Galaxy Training Training techniques to enhance learner participation and engagement T00280 gxy.io/GTN:T00280 https://training.galaxyproject.org//topics/teaching/tutorials/learner_participation_engagement/tutorial.html 2022-09-23 2025-03-11 14 True False False False 0 1882 2189 3.166667 0
Teaching and Hosting Galaxy Training Assessment and feedback in training and teachings T00276 gxy.io/GTN:T00276 https://training.galaxyproject.org//topics/teaching/tutorials/assessment/tutorial.html 2022-09-23 2025-03-11 11 True False False False 0 1508 1739 4.933333 0
Teaching and Hosting Galaxy Training Train-the-Trainer: putting it all together T00354 gxy.io/GTN:T00354 https://training.galaxyproject.org//topics/teaching/tutorials/workshop-final-exercise/tutorial.html 2023-06-12 2025-03-11 3 True False False False 0 185 207 28.283333 0
Epigenetics Introduction to DNA Methylation data analysis S00060 gxy.io/GTN:S00060 https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-dna-methylation/slides.html 2016-10-05 2024-03-05 2 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050029 2.000000 0
Epigenetics Introduction to ChIP-Seq data analysis S00059 gxy.io/GTN:S00059 https://training.galaxyproject.org//topics/epigenetics/tutorials/introduction-chip-seq/slides.html 2017-06-12 2024-03-05 2 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050029 2.000000 0
Epigenetics Formation of the Super-Structures on the Inactive X T00140 gxy.io/GTN:T00140 https://training.galaxyproject.org//topics/epigenetics/tutorials/formation_of_super-structures_on_xi/tutorial.html Genome visualisation, Mapping, Visualisation, Structure visualisation, Gene regulatory network analysis, Read pre-processing, Pathway visualisation, Primer removal, Sequence trimming, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2018-09-17 2026-10-08 19 True True False True bedtools_mergebed, bbgtobigwig, bowtie2, deeptools_compute_matrix, __FLATTEN__, deeptools_bam_compare, falco, deeptools_plot_heatmap, bedtools_sortbed, deeptools_multi_bam_summary, deeptools_plot_correlation, deeptools_bam_coverage, Filter1, macs2_callpeak, cat1, deeptools_plot_fingerprint, trim_galore, jbrowse2, samtools_idxstats Galaxy Europe, Galaxy Main (US) Galaxy Canada 0 4434059 10062976 9.816667 0
Epigenetics Identification of the binding sites of the T-cell acute lymphocytic leukemia protein 1 (TAL1) T00143 gxy.io/GTN:T00143 https://training.galaxyproject.org//topics/epigenetics/tutorials/tal1-binding-site-identification/tutorial.html ChIP-seq Generation, Mapping, Visualisation, Gene regulatory network analysis, Sequence alignment, Genome indexing, Formatting, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2016-12-20 2026-09-30 13 True False False True falco, trimmomatic, deeptools_correct_gc_bias, pygenomeTracks, macs2_callpeak, deeptools_compute_matrix, deeptools_compute_gc_bias, deeptools_plot_fingerprint, deeptools_plot_heatmap, bwa, bedtools_intersectbed, samtools_idxstats, Cut1, deeptools_bam_compare, deeptools_multi_bam_summary, deeptools_plot_correlation Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 8063 14496 7.466667 0
Epigenetics Identification of the binding sites of the Estrogen receptor T00138 gxy.io/GTN:T00138 https://training.galaxyproject.org//topics/epigenetics/tutorials/estrogen-receptor-binding-site-identification/tutorial.html Sequence composition calculation, Gene regulatory network analysis, Read pre-processing, Statistical calculation, Primer removal, Sequence trimming, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2017-09-18 2026-09-23 11 True False False True deeptools_bam_coverage, bowtie2, fastqc, macs2_callpeak, deeptools_compute_matrix, deeptools_plot_fingerprint, deeptools_plot_heatmap, trim_galore, samtools_idxstats, bam_to_sam, deeptools_compute_gc_bias, deeptools_bam_compare, deeptools_multi_bam_summary, deeptools_plot_correlation Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Norway 0 2181 3128 7.033333 0
Epigenetics DNA Methylation data analysis T00142 gxy.io/GTN:T00142 https://training.galaxyproject.org//topics/epigenetics/tutorials/methylation-seq/tutorial.html Epigenomics Visualisation, Sequence composition calculation, Statistical calculation, Sequencing quality control, Read mapping 2017-02-16 2026-09-23 25 True False False True falco, fastqc, wig_to_bigWig, deeptools_compute_matrix, tp_awk_tool, metilene, deeptools_plot_profile, tp_tail_tool, bwameth, pileometh, replace_column_with_key_value_file 0 16887 27274 4.733333 0
Epigenetics Infinium Human Methylation BeadChip T00139 gxy.io/GTN:T00139 https://training.galaxyproject.org//topics/epigenetics/tutorials/ewas-suite/tutorial.html 2018-08-27 2026-09-23 22 True True False True minfi_analysis, chipeakanno_annopeaks, clusterprofiler_bitr, clusterprofiler_go, Remove beginning1, Cut1 Galaxy Europe, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4429594 10053621 8.766667 0
Epigenetics ATAC-Seq data analysis T00137 gxy.io/GTN:T00137 https://training.galaxyproject.org//topics/epigenetics/tutorials/atac-seq/tutorial.html Mapping, Visualisation, Gene regulatory network analysis, Read pre-processing, Sequence alignment analysis, Formatting, Primer removal, Data handling, Sequence trimming, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2019-09-02 2026-09-28 26 True True True True bedtools_bamtobed, bowtie2, wig_to_bigWig, deeptools_compute_matrix, __FLATTEN__, bedtools_intersectbed, pe_histogram, Cut1, falco, deeptools_plot_heatmap, bamFilter, picard_MarkDuplicates, samtools_idxstats, Filter1, macs2_callpeak, tp_sort_header_tool, Grep1, cutadapt, pygenomeTracks 0 4497772 10173703 4.800000 0
Epigenetics CUT&RUN data analysis T00424 gxy.io/GTN:T00424 https://training.galaxyproject.org//topics/epigenetics/tutorials/cut_and_run/tutorial.html Mapping, Visualisation, Gene regulatory network analysis, Read pre-processing, Sequence alignment analysis, Formatting, Validation, Data handling, Sequence trimming, Primer removal, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2024-03-06 2026-09-28 7 True False False True multiqc, bedtools_bamtobed, datamash_transpose, __EXTRACT_DATASET__, bowtie2, wig_to_bigWig, deeptools_compute_matrix, __FLATTEN__, bedtools_intersectbed, pe_histogram, Cut1, falco, idr, deeptools_plot_heatmap, bamFilter, picard_MarkDuplicates, Extract genomic DNA 1, macs2_callpeak, meme_chip, deeptools_plot_fingerprint, trim_galore, Grep1 0 9169 11522 2.650000 0
Epigenetics Hi-C analysis of Drosophila melanogaster cells using HiCExplorer T00141 gxy.io/GTN:T00141 https://training.galaxyproject.org//topics/epigenetics/tutorials/hicexplorer/tutorial.html Visualisation, Read mapping, Formatting 2018-02-23 2026-09-23 32 True False False True hicexplorer_hiccorrectmatrix, bowtie2, hicexplorer_hicinfo, hicexplorer_hicmergematrixbins, hicexplorer_hicfindrestrictionsites, hicexplorer_hicpca, hicexplorer_hicbuildmatrix, hicexplorer_hicfindtads, hicexplorer_hicdetectloops, hicexplorer_hicplotmatrix, pygenomeTracks Galaxy Europe, Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy Canada, Galaxy Norway 0 8553 13835 4.000000 0
Evolution Phylogenetics - Back to basics T00440 gxy.io/GTN:T00440 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo/tutorial.html Sequence analysis, Multiple sequence alignment, Phylogenetic tree generation, Phylogenetic tree analysis, Phylogenetic tree reconstruction, Phylogenetic analysis 2024-05-10 2026-09-23 2 True False False True iqtree, newick_display, rbc_mafft, fasttree Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 8727 11012 3.850000 0
Evolution Phylogenetics - Back to Basics - Introduction S00116 gxy.io/GTN:S00116 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-intro/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Phylogenetics - Back to Basics - Terminology S00120 gxy.io/GTN:S00120 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-terminology/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Phylogenetics - Back to Basics - Multiple Sequence Alignment S00118 gxy.io/GTN:S00118 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-msa/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Phylogenetics - Back to Basics - Building Trees S00121 gxy.io/GTN:S00121 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-trees/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Phylogenetics - Back to Basics - Estimating trees from alignments S00117 gxy.io/GTN:S00117 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-mle-trees/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Phylogenetics - Back to Basics - Phylogenetic Networks S00119 gxy.io/GTN:S00119 https://training.galaxyproject.org//topics/evolution/tutorials/abc_intro_phylo-networks/slides.html 2024-05-10 2024-05-10 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2493629 4671335 1.600000 0
Evolution Tree thinking for tuberculosis evolution and epidemiology T00144 gxy.io/GTN:T00144 https://training.galaxyproject.org//topics/evolution/tutorials/mtb_phylogeny/tutorial.html Genomics, Microbiology, Phylogeny, Infectious disease Sequence analysis, Phylogenetic tree analysis 2022-03-16 2025-06-04 12 True False False True interactive_tool_rstudio, raxml, upload1 Galaxy Europe 0 2857 3993 8.700000 0
Evolution Identifying tuberculosis transmission links: from SNPs to transmission clusters T00145 gxy.io/GTN:T00145 https://training.galaxyproject.org//topics/evolution/tutorials/mtb_transmission/tutorial.html Genomics, Microbiology, Infectious disease, DNA polymorphism Antimicrobial resistance prediction, Variant calling, Phylogenetic tree generation, Phylogenetic tree visualisation 2022-03-16 2025-05-26 13 True False False True __MERGE_COLLECTION__, tb_variant_filter, snippy, tp_grep_tool, addName, snp_sites, tp_sed_tool, trimmomatic, tb_profiler_profile, tp_cat, bcftools_consensus, snp_dists, upload1, tp_replace_in_line, samtools_view, clustering_from_distmat, tp_easyjoin_tool, collapse_dataset, Grep1 Galaxy Europe Galaxy Canada 0 4038 5704 7.833333 0
Evolution Phylogenetic analysis for bacterial comparative genomics T00489 gxy.io/GTN:T00489 https://training.galaxyproject.org//topics/evolution/tutorials/bacterial-comparative-genomics/tutorial.html Genomics, Microbiology, Phylogeny 2025-03-14 2026-09-23 2 True False False False upload1, fasttree Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway Galaxy Switzerland 0 310 363 18.066667 0
FAIR Data, Workflows, and Research FAIR and its Origins T00433 gxy.io/GTN:T00433 https://training.galaxyproject.org//topics/fair/tutorials/fair-origin/tutorial.html 2024-03-26 2024-03-27 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 303 330 8.533333 0
FAIR Data, Workflows, and Research Sequence data submission to ENA T00369 gxy.io/GTN:T00369 https://training.galaxyproject.org//topics/fair/tutorials/fair-ena/tutorial.html 2023-11-01 2024-06-25 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 981 1114 5.516667 0
FAIR Data, Workflows, and Research Making clinical datasets FAIR T00368 gxy.io/GTN:T00368 https://training.galaxyproject.org//topics/fair/tutorials/fair-clinical/tutorial.html 2023-10-24 2024-09-13 5 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 512 627 13.200000 0
FAIR Data, Workflows, and Research RO-Crate - Introduction T00348 gxy.io/GTN:T00348 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-intro/tutorial.html 2023-05-23 2025-04-08 5 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 847 1067 9.716667 0
FAIR Data, Workflows, and Research Introduction to Data Management Plan (DMP) for Peatland Research and PeatDataHub T00454 gxy.io/GTN:T00454 https://training.galaxyproject.org//topics/fair/tutorials/data-management-peatlands/tutorial.html 2024-09-13 2024-09-13 1 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 201 236 6.500000 0
FAIR Data, Workflows, and Research FAIR in a nutshell T00351 gxy.io/GTN:T00351 https://training.galaxyproject.org//topics/fair/tutorials/fair-intro/tutorial.html 2023-05-30 2024-04-30 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1236 1529 9.650000 0
FAIR Data, Workflows, and Research Workflow Run RO-Crate Introduction T00343 gxy.io/GTN:T00343 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-workflow-run-ro-crate/tutorial.html 2023-05-11 2023-05-11 1 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 568 674 5.683333 0
FAIR Data, Workflows, and Research DataPLANT ARCs T00466 gxy.io/GTN:T00466 https://training.galaxyproject.org//topics/fair/tutorials/dataplant-arcs/tutorial.html 2024-10-22 2026-09-23 5 True True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2251199 4046238 12.400000 0
FAIR Data, Workflows, and Research RO-Crate in Python T00341 gxy.io/GTN:T00341 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-python/tutorial.html 2023-05-11 2025-04-08 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 404 442 13.033333 0
FAIR Data, Workflows, and Research Exporting Workflow Run RO-Crates from Galaxy T00340 gxy.io/GTN:T00340 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-in-galaxy/tutorial.html Visualisation 2023-05-11 2026-09-21 9 True False False False ggplot2_point, datamash_ops, csv_to_tabular, Grouping1, tp_sorted_uniq, Remove beginning1, Cut1 0 458 535 13.816667 0
FAIR Data, Workflows, and Research Metadata T00432 gxy.io/GTN:T00432 https://training.galaxyproject.org//topics/fair/tutorials/fair-metadata/tutorial.html 2024-03-26 2024-03-27 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 397 450 10.183333 0
FAIR Data, Workflows, and Research FAIR data management solutions T00349 gxy.io/GTN:T00349 https://training.galaxyproject.org//topics/fair/tutorials/data-management/tutorial.html 2023-05-30 2025-01-16 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 556 653 13.083333 0
FAIR Data, Workflows, and Research Best practices for workflows in GitHub repositories T00339 gxy.io/GTN:T00339 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-galaxy-best-practices/tutorial.html 2023-05-11 2025-04-08 6 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 569 640 12.300000 0
FAIR Data, Workflows, and Research Data Registration T00431 gxy.io/GTN:T00431 https://training.galaxyproject.org//topics/fair/tutorials/fair-data-registration/tutorial.html 2024-03-26 2024-09-27 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 204 213 7.833333 0
FAIR Data, Workflows, and Research Submitting workflows to LifeMonitor T00342 gxy.io/GTN:T00342 https://training.galaxyproject.org//topics/fair/tutorials/ro-crate-submitting-life-monitor/tutorial.html 2023-05-11 2024-09-26 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 163 181 8.833333 0
FAIR Data, Workflows, and Research FAIR Bioimage Metadata T00362 gxy.io/GTN:T00362 https://training.galaxyproject.org//topics/fair/tutorials/bioimage-metadata/tutorial.html 2023-09-13 2025-11-27 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 522 598 11.483333 0
FAIR Data, Workflows, and Research Access T00430 gxy.io/GTN:T00430 https://training.galaxyproject.org//topics/fair/tutorials/fair-access/tutorial.html 2024-03-26 2024-03-27 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 218 231 18.983333 0
FAIR Data, Workflows, and Research REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data T00361 gxy.io/GTN:T00361 https://training.galaxyproject.org//topics/fair/tutorials/bioimage-REMBI/tutorial.html 2023-09-13 2025-11-27 9 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 577 645 11.150000 0
FAIR Data, Workflows, and Research Persistent Identifiers T00434 gxy.io/GTN:T00434 https://training.galaxyproject.org//topics/fair/tutorials/fair-persistent-identifiers/tutorial.html 2024-03-26 2024-03-27 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 452 528 8.416667 0
FAIR Data, Workflows, and Research FAIRification of an RNAseq dataset T00435 gxy.io/GTN:T00435 https://training.galaxyproject.org//topics/fair/tutorials/fair-rna/tutorial.html 2024-03-27 2026-05-28 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 465 549 11.116667 0
FAIR Data, Workflows, and Research An earth-system RO-Crate S00127 gxy.io/GTN:S00127 https://training.galaxyproject.org//topics/fair/tutorials/earth_system_rocrate/slides.html 2024-12-02 2024-12-02 1 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2188195 3901640 1.433333 0
FAIR Data, Workflows, and Research Integrating InvenioRDM-compatible Repositories with Galaxy T00564 gxy.io/GTN:T00564 https://training.galaxyproject.org//topics/fair/tutorials/inveniordm-integration/tutorial.html 2025-11-06 2025-11-06 1 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 167 174 18.366667 0
FAIR Data, Workflows, and Research Uploading Data to Zenodo from Galaxy T00565 gxy.io/GTN:T00565 https://training.galaxyproject.org//topics/fair/tutorials/zenodo-in-galaxy/tutorial.html 2025-11-06 2025-11-06 1 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 234 246 22.633333 0
Using Galaxy and Managing your Data Workflow Reports T00165 gxy.io/GTN:T00165 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-reports/tutorial.html Visualisation 2022-06-02 2024-06-14 9 True False True True ggplot2_point, datamash_ops, csv_to_tabular, Grouping1, upload1, tp_sorted_uniq, Remove beginning1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium, Galaxy Norway Galaxy Switzerland, Galaxy Canada 0 1101 1456 11.150000 0
Using Galaxy and Managing your Data InterMine integration with Galaxy T00152 gxy.io/GTN:T00152 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/intermine/tutorial.html 2020-12-09 2026-09-23 10 True False False True intermine, galaxy_intermine_exchange Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 307 373 24.750000 0
Using Galaxy and Managing your Data Using Workflow Parameters T00164 gxy.io/GTN:T00164 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-parameters/tutorial.html 2019-06-27 2024-06-14 15 True False True True tp_head_tool Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 2262 2842 10.516667 0
Using Galaxy and Managing your Data Creating, Editing and Importing Galaxy Workflows T00163 gxy.io/GTN:T00163 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-editor/tutorial.html 2020-07-17 2023-11-09 12 True False False True Paste1, tp_tac, Show beginning1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 6791 8367 7.583333 0
Using Galaxy and Managing your Data Getting data into Galaxy S00062 gxy.io/GTN:S00062 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/get-data/slides.html 2017-05-24 2022-10-18 4 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050036 2.000000 0
Using Galaxy and Managing your Data Galaxy workflows in Dockstore S00061 gxy.io/GTN:S00061 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-on-dockstore/slides.html 2022-01-14 2022-10-27 4 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3871226 8214057 1.900000 0
Using Galaxy and Managing your Data Group tags for complex experimental designs T00149 gxy.io/GTN:T00149 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/group-tags/tutorial.html 2019-03-06 2023-11-09 11 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3021 4011 11.166667 0
Using Galaxy and Managing your Data Importing (uploading) data from Onedata T00493 gxy.io/GTN:T00493 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-import/tutorial.html 2025-03-24 2025-04-08 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 510 628 16.250000 0
Using Galaxy and Managing your Data Searching Your History T00158 gxy.io/GTN:T00158 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/search/tutorial.html 2020-07-15 2023-11-16 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 536 760 22.666667 0
Using Galaxy and Managing your Data Rule Based Uploader: Advanced T00161 gxy.io/GTN:T00161 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules-advanced/tutorial.html 2018-05-25 2024-06-14 11 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1002 1305 16.266667 0
Using Galaxy and Managing your Data Accessing IIIF from within Galaxy T00584 gxy.io/GTN:T00584 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/iiif/tutorial.html 2026-07-14 2026-08-13 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 51 52 4.300000 0
Using Galaxy and Managing your Data RStudio in Galaxy T00157 gxy.io/GTN:T00157 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/rstudio/tutorial.html 2019-10-08 2026-02-25 16 True False False False interactive_tool_rstudio Galaxy Europe 0 5872 8997 8.150000 0
Using Galaxy and Managing your Data Understanding Galaxy history system T00150 gxy.io/GTN:T00150 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history/tutorial.html 2017-02-20 2026-07-23 13 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 6247 7919 9.966667 0
Using Galaxy and Managing your Data Rule Based Uploader T00160 gxy.io/GTN:T00160 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/upload-rules/tutorial.html 2020-07-04 2026-09-23 12 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 6476 8221 9.733333 0
Using Galaxy and Managing your Data JupyterLab in Galaxy T00153 gxy.io/GTN:T00153 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/jupyterlab/tutorial.html 2020-03-05 2025-04-25 9 True False False False interactive_tool_jupyter_notebook Galaxy Europe, Galaxy Main (US), Galaxy Switzerland 0 2398 3719 9.916667 0
Using Galaxy and Managing your Data Getting started with Onedata distributed storage T00491 gxy.io/GTN:T00491 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-getting-started/tutorial.html 2025-03-24 2025-04-08 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 395 508 11.550000 0
Using Galaxy and Managing your Data Name tags for following complex histories T00154 gxy.io/GTN:T00154 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/name-tags/tutorial.html 2019-04-08 2023-11-09 8 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 1972 2569 13.016667 0
Using Galaxy and Managing your Data Downloading and Deleting Data in Galaxy T00147 gxy.io/GTN:T00147 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/download-delete-data/tutorial.html 2019-10-17 2026-01-23 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 8348 10889 4.400000 0
Using Galaxy and Managing your Data Using dataset collections T00146 gxy.io/GTN:T00146 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/collections/tutorial.html Genome indexing, Read mapping, Sequence alignment, Generation 2016-09-30 2026-09-23 21 True False True False bwa_mem, lofreq_call, snpSift_extractFields, collapse_dataset Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 17968 24255 8.650000 0
Using Galaxy and Managing your Data Onedata user-owned storage T00490 gxy.io/GTN:T00490 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-byos/tutorial.html 2025-03-24 2025-04-08 3 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 248 282 16.000000 0
Using Galaxy and Managing your Data Annotate, prepare tests and publish Galaxy workflows in workflow registries T00533 gxy.io/GTN:T00533 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-fairification/tutorial.html Visualisation, Validation, Sequencing quality control, Read mapping 2025-05-26 2025-05-26 1 True False False False falco, multiqc Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 588 672 7.750000 0
Using Galaxy and Managing your Data Use Jupyter notebooks in Galaxy T00148 gxy.io/GTN:T00148 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/galaxy-intro-jupyter/tutorial.html 2018-07-02 2026-09-23 12 True False True False interactive_tool_jupyter_notebook Galaxy Europe, Galaxy Main (US), Galaxy Switzerland 0 3194 4158 8.350000 0
Using Galaxy and Managing your Data Extracting Workflows from Histories T00151 gxy.io/GTN:T00151 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/history-to-workflow/tutorial.html 2017-10-18 2026-07-23 9 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3462 4425 10.766667 0
Using Galaxy and Managing your Data Creating high resolution images of Galaxy Workflows T00405 gxy.io/GTN:T00405 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/workflow-posters/tutorial.html 2024-02-05 2025-04-08 3 True False False False graphicsmagick_image_convert Galaxy Europe, Galaxy Belgium Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 453 536 23.750000 0
Using Galaxy and Managing your Data Exporting to Onedata remote T00492 gxy.io/GTN:T00492 https://training.galaxyproject.org//topics/galaxy-interface/tutorials/onedata-remote-export/tutorial.html 2025-03-24 2025-04-08 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 179 191 15.383333 0
Genome Annotation Masking repeats with RepeatMasker T00178 gxy.io/GTN:T00178 https://training.galaxyproject.org//topics/genome-annotation/tutorials/repeatmasker/tutorial.html Sequence composition, complexity and repeats, Genomics Mapping, Repeat sequence detection, RNA-Seq analysis, Editing, Genome annotation 2021-11-29 2026-09-23 23 True False True True repeatmodeler, repeatmasker_wrapper, bedtools_maskfastabed, red Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada 0 11832 14900 4.316667 0
Genome Annotation Introduction to Genome Annotation S00069 gxy.io/GTN:S00069 https://training.galaxyproject.org//topics/genome-annotation/tutorials/introduction/slides.html 2019-05-13 2025-04-23 5 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050197 2.000000 0
Genome Annotation Comparative gene analysis in unannotated genomes T00174 gxy.io/GTN:T00174 https://training.galaxyproject.org//topics/genome-annotation/tutorials/gene-centric/tutorial.html Genomics, Gene and protein families, Sequence analysis, Phylogeny, Comparative genomics Database search, Coding region prediction, Multiple sequence alignment, Sequence alignment analysis, Phylogenetic tree generation, De-novo assembly, Transcriptome assembly 2022-09-08 2026-09-23 11 True False False True rbc_mafft, bg_diamond_makedb, join1, Filter1, Add_a_column1, bg_diamond, cat1, regexColumn1, bg_diamond_view, tab2fasta, rapidnj, collapse_dataset, orfipy, Cut1, tp_split_on_column, gops_intersect_1 Galaxy Europe, Galaxy Main (US) Galaxy Canada 0 2272 3065 10.066667 0
Genome Annotation Genome annotation with Funannotate T00172 gxy.io/GTN:T00172 https://training.galaxyproject.org//topics/genome-annotation/tutorials/funannotate/tutorial.html Gene and protein families Genome visualisation, Query and retrieval, Sequence annotation, Fold recognition, Protein feature detection, Sequence alignment, Homology-based gene prediction, Formatting, Sequence motif recognition, Information extraction, Genome annotation, Sequence assembly validation 2021-11-29 2026-09-23 27 True False True True picard_MergeSamFiles, aegean_parseval, eggnog_mapper, funannotate_annotate, interproscan, busco, funannotate_compare, funannotate_predict, rna_star, jbrowse Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Australia, Galaxy Canada 0 12808 17741 5.550000 0
Genome Annotation Genome annotation with Maker (short) T00167 gxy.io/GTN:T00167 https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker-short/tutorial.html Genome visualisation, Sequence annotation, Genome annotation, Sequence assembly validation 2021-01-12 2026-09-23 4 True False False True maker, maker_map_ids, busco, jcvi_gff_stats, gffread, fasta-stats, jbrowse Galaxy Belgium 0 4576 6295 9.316667 0
Genome Annotation Essential genes detection with Transposon insertion sequencing T00179 gxy.io/GTN:T00179 https://training.galaxyproject.org//topics/genome-annotation/tutorials/tnseq/tutorial.html Genomics, Microbiology, Sequence analysis, Mobile genetic elements Sequence trimming, Transposon prediction, Read pre-processing, Primer removal 2019-07-02 2026-09-23 13 True True False True bg_find_subsequences, deeptools_bam_coverage, bowtie_wrapper, transit_gumbel, Filter1, tp_easyjoin_tool, Add_a_column1, gff_to_prot, tp_sort_header_tool, __EXTRACT_DATASET__, Cut1, cutadapt Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy Europe, Galaxy Canada 0 4436353 10066059 5.750000 0
Genome Annotation Genome annotation with Maker T00166 gxy.io/GTN:T00166 https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-maker/tutorial.html Operation, Genome visualisation, Gene prediction, Sequence annotation, Ab-initio gene prediction, Genome annotation, Homology-based gene prediction, Sequence assembly validation 2018-09-24 2026-09-23 15 True False False True maker, maker_map_ids, snap_training, busco, jcvi_gff_stats, augustus_training, gffread, fasta-stats, jbrowse Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy Canada 0 14670 25449 4.433333 0
Genome Annotation Functional annotation of protein sequences T00173 gxy.io/GTN:T00173 https://training.galaxyproject.org//topics/genome-annotation/tutorials/functional/tutorial.html Function analysis, Protein sites, features and motifs Query and retrieval, Sequence alignment analysis, Fold recognition, Sequence motif recognition, Protein feature detection, Information extraction, Genome annotation, Homology-based gene prediction 2022-07-20 2026-09-23 13 True False False True bg_diamond, eggnog_mapper, ncbi_blastp_wrapper, interproscan Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 5485 7145 6.133333 0
Genome Annotation Refining Genome Annotations with Apollo (eukaryotes) T00170 gxy.io/GTN:T00170 https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo-euk/tutorial.html Genomics Genome visualisation 2022-08-22 2026-09-23 17 True False False False create_or_update, jbrowse, iframe Galaxy Norway Galaxy Europe, Galaxy Canada, Galaxy Belgium 0 1915 2725 10.950000 0
Genome Annotation Long non-coding RNAs (lncRNAs) annotation with FEELnc T00177 gxy.io/GTN:T00177 https://training.galaxyproject.org//topics/genome-annotation/tutorials/lncrna/tutorial.html Annotation, Sequence annotation, RNA-Seq analysis, Classification, Transcriptome assembly 2022-09-23 2026-09-23 12 True False True True Extract_features1, stringtie, feelnc, gffread, tp_cat Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 2442 3190 9.750000 0
Genome Annotation CRISPR screen analysis T00171 gxy.io/GTN:T00171 https://training.galaxyproject.org//topics/genome-annotation/tutorials/crispr-screen/tutorial.html Sequencing quality control, Sequence composition calculation, Statistical calculation, Primer removal, Sequence trimming, Validation, Read pre-processing, Genetic variation analysis 2021-10-15 2026-09-23 13 True True True True multiqc, fastqc, mageck_mle, mageck_count, tp_awk_tool, mageck_test, volcanoplot, cutadapt Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Canada, Galaxy Norway 0 4029999 8689509 4.633333 0
Genome Annotation Genome annotation with Prokka T00168 gxy.io/GTN:T00168 https://training.galaxyproject.org//topics/genome-annotation/tutorials/annotation-with-prokka/tutorial.html Genomics, Microbiology, Gene and protein families, Sequence analysis Genome visualisation, Coding region prediction, Gene prediction, Genome annotation 2018-03-06 2026-09-23 28 True True True True prokka, jbrowse Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 4447452 10083778 7.100000 0
Genome Annotation Genome annotation with Braker3 T00497 gxy.io/GTN:T00497 https://training.galaxyproject.org//topics/genome-annotation/tutorials/braker3/tutorial.html Sequence assembly, Genomics, Biodiversity, Zoology, Plant biology Genome visualisation, Gene prediction, Sequence annotation, Differential protein expression profiling, Genome annotation, Sequence alignment, Sequence assembly validation 2025-03-17 2026-09-23 6 True False False True busco, braker3, omark, gffread, fasta-stats, rna_star, jbrowse 0 2764 3317 4.616667 0
Genome Annotation From small to large-scale genome comparison T00176 gxy.io/GTN:T00176 https://training.galaxyproject.org//topics/genome-annotation/tutorials/hpc-for-lsgc/tutorial.html Multiple sequence alignment 2021-02-08 2026-09-23 9 True True False True gecko, chromeister, clustalw, tp_awk_tool Galaxy Europe, Galaxy Australia Galaxy Canada, Galaxy Belgium 0 4383124 9890397 10.200000 0
Genome Annotation Bacterial Genome Annotation T00403 gxy.io/GTN:T00403 https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-annotation/tutorial.html Genomics, Microbiology, Gene and protein families, Sequence analysis, Whole genome sequencing, Functional genomics, Mobile genetic elements Genome visualisation, Protein feature detection, Structural variation detection, Scaffolding, Multilocus sequence typing, Sequence motif recognition, Nucleic acid feature detection, Genome annotation, Genome assembly 2024-02-01 2026-09-23 7 True False True True integron_finder, tp_replace_in_column, tbl2gff3, Grouping1, upload1, tp_tail_tool, bakta, isescan, plasmidfinder, jbrowse Galaxy Europe, Galaxy France Galaxy Main (US), Galaxy Canada, Galaxy Belgium 0 9747 13298 7.900000 0
Genome Annotation Comparison of two annotation tools - Helixer and Braker3 T00539 gxy.io/GTN:T00539 https://training.galaxyproject.org//topics/genome-annotation/tutorials/comparison-braker-helixer-annotation/tutorial.html Sequence assembly, Genomics Genome visualisation, Gene prediction, Sequence annotation, Differential protein expression profiling, Genome annotation, Sequence alignment, Sequence assembly validation 2025-06-20 2026-09-23 3 True False False True busco, braker3, omark, helixer, gffread, rna_star, jbrowse 0 1067 1211 7.550000 0
Genome Annotation Identification of AMR genes in an assembled bacterial genome T00401 gxy.io/GTN:T00401 https://training.galaxyproject.org//topics/genome-annotation/tutorials/amr-gene-detection/tutorial.html Whole genome sequencing, Public health and epidemiology, Genomics, Microbiology, Sequence analysis, Infectious disease, Antimicrobial resistance Antimicrobial resistance prediction, Read mapping, Genome annotation, Genome visualisation 2024-01-23 2026-09-23 12 True False True True bowtie2, staramr_search, tbl2gff3, upload1, bakta, Grep1, jbrowse Galaxy Europe, Galaxy France, Galaxy Belgium Galaxy Main (US), Galaxy Canada 0 5178 7057 9.050000 0
Genome Annotation Secondary metabolite discovery T00420 gxy.io/GTN:T00420 https://training.galaxyproject.org//topics/genome-annotation/tutorials/secondary-metabolite-discovery/tutorial.html Gene prediction, Differential gene expression analysis, Sequence clustering, Data handling, Service invocation 2024-02-21 2026-09-23 3 True False False True ctb_simsearch, ctb_silicos_qed, antismash, ctb_np-likeness-calculator, ctb_chemfp_mol2fps, interactive_tool_jupyter_notebook, openbabel_remDuplicates, tp_awk_tool, edu.tamu.cpt.gff3.customGbkToGff, ncbi_acc_download, collapse_dataset, Remove beginning1, bp_genbank2gff3 Galaxy Europe 0 1075 1319 3.850000 0
Genome Annotation Genome annotation with Helixer T00451 gxy.io/GTN:T00451 https://training.galaxyproject.org//topics/genome-annotation/tutorials/helixer/tutorial.html Biodiversity, Genomics, Zoology, Plant biology Genome visualisation, Gene prediction, Sequence annotation, Differential protein expression profiling, Genome annotation, Sequence assembly validation 2024-08-21 2026-09-23 9 True False False True busco, jcvi_gff_stats, omark, helixer, gffread, jbrowse 0 1919 2250 6.933333 0
Genome Annotation Refining Genome Annotations with Apollo (prokaryotes) T00169 gxy.io/GTN:T00169 https://training.galaxyproject.org//topics/genome-annotation/tutorials/apollo/tutorial.html Genomics, Microbiology, Gene and protein families, Sequence analysis Genome visualisation 2021-06-04 2026-09-23 23 True True True True create_or_update, create_account, iframe, list_organism, jbrowse Galaxy Europe, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4194535 9274284 13.216667 0
Genome Annotation Creating an Official Gene Set T00370 gxy.io/GTN:T00370 https://training.galaxyproject.org//topics/genome-annotation/tutorials/official-gene-set/tutorial.html 2023-11-02 2024-02-29 2 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 86 92 14.200000 0
Genome Annotation Dataset construction for bacterial comparative genomics T00494 gxy.io/GTN:T00494 https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-comparative-genomics-dataset-construction/tutorial.html Genomics, Microbiology Sequence database search, Data retrieval, Data handling 2025-03-14 2026-09-23 3 True False False False sort1, cat1, bg_uniq, upload1, Remove beginning1, Cut1, datasets_download_genome Galaxy France 0 186 205 33.416667 0
Genome Annotation Genome Annotation T00175 gxy.io/GTN:T00175 https://training.galaxyproject.org//topics/genome-annotation/tutorials/genome-annotation/tutorial.html 2015-06-29 2026-09-23 20 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 35642 64560 2.116667 0
Genome Annotation Pangenome analysis with Roary T00586 gxy.io/GTN:T00586 https://training.galaxyproject.org//topics/genome-annotation/tutorials/pangenome-annotation-with-roary/tutorial.html Genomics Sequence analysis, Coding region prediction, Gene prediction, Phylogenetic analysis, Genome annotation, Genome assembly 2026-07-21 2026-09-23 3 True False False False iqtree, prokka, upload1, roary Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 393 466 3.483333 0
Genome Annotation Bacterial pangenomics T00496 gxy.io/GTN:T00496 https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-pangenomics/tutorial.html Genomics, Microbiology Genome annotation, Rarefaction, Sequence assembly, Essential dynamics 2025-03-14 2026-09-23 2 True False False False ppanggolin_msa, upload1, ppanggolin_all Galaxy Europe, Galaxy France Galaxy Canada 0 238 268 15.633333 0
Genome Annotation Bacterial genome quality control T00495 gxy.io/GTN:T00495 https://training.galaxyproject.org//topics/genome-annotation/tutorials/bacterial-genome-quality-control/tutorial.html Genomics, Microbiology Sequence composition calculation, Statistical calculation, Sequencing quality control, Validation, Genome comparison, Sequence assembly validation 2025-03-14 2026-09-03 3 True False False False checkm2, upload1, drep_dereplicate Galaxy Europe, Galaxy Main (US), Galaxy France Galaxy Switzerland, Galaxy Canada 0 280 322 20.100000 0
Variant Analysis Microbial Variant Calling T00313 gxy.io/GTN:T00313 https://training.galaxyproject.org//topics/variant-analysis/tutorials/microbial-variants/tutorial.html Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation Genome visualisation, Variant calling, Phylogenetic tree generation, Phylogenetic tree visualisation 2018-02-26 2026-09-23 26 True False False True snippy, jbrowse Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 16976 26592 5.016667 0
Visualisation Genomic Data Visualisation with JBrowse T00322 gxy.io/GTN:T00322 https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse/tutorial.html Genome visualisation 2020-01-10 2026-09-23 18 True True False False jbrowse Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium, Galaxy Norway Galaxy Switzerland, Galaxy Canada 0 4432876 10057562 10.616667 0
Visualisation Genomic Data Visualisation with JBrowse2 T00578 gxy.io/GTN:T00578 https://training.galaxyproject.org//topics/visualisation/tutorials/jbrowse2/tutorial.html Genome visualisation, Structure visualisation, Pathway visualisation 2026-04-29 2026-09-23 2 True False False False jbrowse2 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Australia 0 394 411 3.700000 0
Imaging Quantification of electrophoresis gel bands using QuPath and Galaxy imaging tools T00549 gxy.io/GTN:T00549 https://training.galaxyproject.org//topics/imaging/tutorials/electrophoresis-gel-bands-image-analysis/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2025-08-11 2026-06-01 4 True False False True graphicsmagick_image_convert, ip_points_to_label, ip_2d_feature_extraction, ip_imageinfo, interactive_tool_qupath, __EXTRACT_DATASET__, ip_split_image Galaxy Europe 0 671 765 3.616667 0
Imaging Parameter tuning and optimization - Evaluating nuclei segmentation with Galaxy T00532 gxy.io/GTN:T00532 https://training.galaxyproject.org//topics/imaging/tutorials/parameter-tuning/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2025-04-28 2026-01-21 4 True False False True ip_threshold, tp_split_on_column, ip_segmetrics, collapse_dataset, ip_filter_standard, ip_histogram_equalization, param_value_from_file Galaxy Canada, Galaxy Belgium Galaxy Europe, Galaxy Main (US) 0 227 242 17.950000 0
Imaging Segmentation of Anatomical Structures in Medical 3-D Images T00574 gxy.io/GTN:T00574 https://training.galaxyproject.org//topics/imaging/tutorials/dicom-anatomical-3d/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2026-02-26 2026-09-23 2 True False False True unzip, Add_a_column1, add_line_to_file, ip_binary_to_labelimage, ip_2d_feature_extraction, Convert characters1, libcarna_render, param_value_from_file, query_tabular, highdicom_dicom2tiff, compose_text_param, ip_threshold, tp_text_file_with_recurring_lines, tp_replace_in_line, ip_2d_filter_segmentation_by_features, ip_concat_channels, ridge_filter_skimage, clip_image, tp_sort_header_tool, ip_scale_image Galaxy Europe, Galaxy Belgium Galaxy Main (US) 0 272 299 13.666667 0
Imaging Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy T00499 gxy.io/GTN:T00499 https://training.galaxyproject.org//topics/imaging/tutorials/omero-suite/tutorial.html Image analysis 2024-12-04 2026-09-23 10 True False False True omero_get_id, split_file_to_collection, omero_get_value, omero_filter, omero_metadata_import, omero_roi_import, Convert characters1, tp_replace_in_line, param_value_from_file, omero_import Galaxy Europe Galaxy Main (US), Galaxy Canada 0 429 548 13.416667 0
Imaging Content Tracking and Verification in Galaxy Workflows with ISCC-SUM T00572 gxy.io/GTN:T00572 https://training.galaxyproject.org//topics/imaging/tutorials/iscc-suite/tutorial.html Image analysis 2026-02-14 2026-09-23 3 True False False True ip_threshold, iscc_sum, iscc_sum_verify, param_value_from_file, __EXTRACT_DATASET__, ip_split_image, iscc_sum_similarity Galaxy Europe, Galaxy Main (US) Galaxy Canada 0 101 101 42.633333 0
Imaging Quantitative Analysis of Histological Staining Using Color Deconvolution T00581 gxy.io/GTN:T00581 https://training.galaxyproject.org//topics/imaging/tutorials/stain-quantification-color-deconvolution/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2026-06-15 2026-09-23 3 True False False True Add_a_column1, ip_2d_feature_extraction, __EXTRACT_DATASET__, imagej2_analyze_particles_binary, collection_element_identifiers, tp_sed_tool, Show beginning1, ip_imageinfo, ip_histogram_equalization, Cut1, tp_cat, ip_color_deconvolution, ip_threshold, tp_text_file_with_recurring_lines, Paste1, ip_split_image, cat1, collapse_dataset, Grep1, Show tail1 0 250 280 13.583333 0
Imaging End-to-End Tissue Microarray Image Analysis with Galaxy-ME T00334 gxy.io/GTN:T00334 https://training.galaxyproject.org//topics/imaging/tutorials/multiplex-tissue-imaging-TMA/tutorial.html 2023-02-14 2026-09-23 10 True False False True celesta, gate_finder, scimap_mcmicro_to_anndata, rename_tiff_channels, palom, scimap_phenotyping, quantification, squidpy_spatial, scanpy_compute_graph, ashlar, basic_illumination, ip_convertimage, unet_coreograph, vitessce_spatial, mesmer 0 1880 2461 4.633333 0
Imaging Training Custom YOLO Models for Segmentation of Bioimages T00550 gxy.io/GTN:T00550 https://training.galaxyproject.org//topics/imaging/tutorials/yolo-segmentation-training/tutorial.html Image annotation, Visualisation, Image analysis, Data handling 2025-07-25 2026-09-23 8 True False False True graphicsmagick_image_convert, yolo_training, unzip, interactive_tool_anylabeling, ip_histogram_equalization, json2yolosegment Galaxy Europe 0 592 670 2.833333 0
Imaging Use Pycytominer in Galaxy for processing high dimensional image-based readouts T00597 gxy.io/GTN:T00597 https://training.galaxyproject.org//topics/imaging/tutorials/pycytominer/tutorial.html 2026-10-08 2026-10-13 2 True False False True pycytominer_annotate, pycytominer_feature_select, pycytominer_aggregate, pycytominer_consensus, pycytominer_normalize Galaxy Europe, Galaxy Belgium 0 17 24 7.983333 0
Imaging Introduction to Image Analysis using Galaxy T00181 gxy.io/GTN:T00181 https://training.galaxyproject.org//topics/imaging/tutorials/imaging-introduction/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2019-08-13 2026-09-23 20 True False False True ip_overlay_images, ip_threshold, unzip, ip_binary_to_labelimage, ip_imageinfo, ip_histogram_equalization, ip_filter_standard, ip_count_objects Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy Main (US), Galaxy Switzerland 0 3169 4328 8.966667 0
Imaging Execute a BiaPy workflow in Galaxy T00571 gxy.io/GTN:T00571 https://training.galaxyproject.org//topics/imaging/tutorials/biapy/tutorial.html Image analysis 2026-02-11 2026-09-23 3 True False False True biapy, ip_binary_to_labelimage, ip_convertimage, __EXTRACT_DATASET__, libcarna_render, ip_overlay_images Galaxy Europe Galaxy Canada, Galaxy Belgium 0 128 137 12.150000 0
Imaging Analyse HeLa fluorescence siRNA screen T00180 gxy.io/GTN:T00180 https://training.galaxyproject.org//topics/imaging/tutorials/hela-screen-analysis/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2019-08-13 2026-09-23 18 True False False True ip_threshold, ip_2d_filter_segmentation_by_features, unzip, ip_binary_to_labelimage, ip_2d_feature_extraction, collapse_dataset, ip_filter_standard Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy Main (US), Galaxy Norway 0 976 1262 16.633333 0
Imaging Object tracking using CellProfiler T00182 gxy.io/GTN:T00182 https://training.galaxyproject.org//topics/imaging/tutorials/object-tracking-using-cell-profiler/tutorial.html Quantification, Image analysis, Parsing 2021-03-17 2026-10-20 15 True False False True unzip, cp_common, cp_overlay_outlines, cp_measure_object_size_shape, cp_identify_primary_objects, cp_export_to_spreadsheet, cp_save_images, cp_tile, cp_track_objects, cp_measure_object_intensity, cp_cellprofiler, cp_color_to_gray Galaxy Europe, Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy Canada 0 2460 3007 5.583333 0
Imaging Quantification of single-molecule RNA fluorescence in situ hybridization (smFISH) in yeast cell lines T00498 gxy.io/GTN:T00498 https://training.galaxyproject.org//topics/imaging/tutorials/2D-spot-detection/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2025-03-20 2025-11-26 5 True False False True ip_points_to_label, unzip, ip_binary_to_labelimage, idr_download_by_ids, __EXTRACT_DATASET__, ip_histogram_equalization, ip_spot_detection_2d, ip_overlay_images Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Canada 0 364 424 10.283333 0
Imaging Voronoi segmentation T00534 gxy.io/GTN:T00534 https://training.galaxyproject.org//topics/imaging/tutorials/voronoi-segmentation/tutorial.html Visualisation, Image analysis, Data handling, Image annotation 2025-05-13 2026-09-23 9 True False False True ip_overlay_images, ip_threshold, colorize_labels, unzip, voronoi_tessellation, image_math, ip_binary_to_labelimage, ip_2d_feature_extraction, ip_imageinfo, ip_convertimage, repeat_channels, ip_filter_standard, ip_count_objects Galaxy Europe, Galaxy Canada, Galaxy Belgium Galaxy Main (US) 0 658 850 6.833333 0
Imaging Using BioImage.IO models for image analysis in Galaxy T00500 gxy.io/GTN:T00500 https://training.galaxyproject.org//topics/imaging/tutorials/process-image-bioimageio/tutorial.html Image analysis 2025-04-09 2026-10-20 13 True False False True ip_threshold, bioimage_inference, image_math, ip_binary_to_labelimage, __EXTRACT_DATASET__, ip_split_image, ip_overlay_images Galaxy Europe, Galaxy Canada, Galaxy Belgium 0 404 456 10.400000 0
Imaging Tracking of mitochondria and capturing mitoflashes T00472 gxy.io/GTN:T00472 https://training.galaxyproject.org//topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html Image analysis 2024-11-20 2026-09-23 6 True False False True ip_points_association_nn, ip_curve_fitting, ip_spot_detection_2d Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium Galaxy Canada 0 358 408 7.500000 0
Imaging Nucleoli segmentation and feature extraction using CellProfiler T00183 gxy.io/GTN:T00183 https://training.galaxyproject.org//topics/imaging/tutorials/tutorial-CP/tutorial.html Quantification, Image analysis, Parsing 2020-07-01 2025-11-26 12 True True False True cp_display_data_on_image, cp_relate_objects, cp_mask_image, cp_measure_granularity, cp_save_images, cp_enhance_or_suppress_features, cp_measure_image_intensity, cp_image_math, cp_measure_object_intensity, cp_gray_to_color, cp_measure_image_area_occupied, cp_identify_primary_objects, cp_convert_objects_to_image, cp_measure_texture, cp_common, cp_measure_image_quality, cp_measure_object_size_shape, idr_download_by_ids, cp_export_to_spreadsheet, cp_cellprofiler Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 4431443 10056236 5.933333 0
Imaging Where to start with bioimage analysis in Galaxy T00573 gxy.io/GTN:T00573 https://training.galaxyproject.org//topics/imaging/tutorials/where-to-start-bioimaging-galaxy/tutorial.html Visualisation, Formatting, Image analysis, Data handling, Quantification, Image annotation, Parsing 2026-02-17 2026-08-24 5 True False False False bioimage_inference, interactive_tool_cellprofiler, libcarna_render, interactive_tool_cellpose, cellposesam, ip_imageinfo, cellpose, ip_histogram_equalization, ip_color_deconvolution, ip_threshold, cp_overlay_outlines, ip_split_image, ip_overlay_images, ip_filter_standard, bf2raw, interactive_tool_ilastik, idr_download_by_ids, interactive_tool_qupath, ip_convertimage 0 442 507 6.400000 0
Imaging AI pipeline for annotating marine species (Project Moorev - Marine) T00587 gxy.io/GTN:T00587 https://training.galaxyproject.org//topics/imaging/tutorials/Annotation_AI_Pipeline/tutorial.html 2026-07-24 2026-09-23 4 True False False False sam3_semantic_segmentation, coco_annotation_visualizer, edit_coco_annotation Galaxy Europe 0 82 91 25.933333 0
Introduction to Galaxy Analyses Introduction to Galaxy S00073 gxy.io/GTN:S00073 https://training.galaxyproject.org//topics/introduction/tutorials/introduction/slides.html 2016-09-30 2025-09-23 6 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050202 2.000000 0
Introduction to Galaxy Analyses A short introduction to Galaxy T00190 gxy.io/GTN:T00190 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-short/tutorial.html Sequencing quality control, Sequence composition calculation, Statistical calculation 2018-08-27 2026-09-23 45 True True True True cshl_fastq_quality_filter, fastqc Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 4493301 10151468 11.900000 0
Introduction to Galaxy Analyses Galaxy Basics for genomics T00186 gxy.io/GTN:T00186 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101/tutorial.html Mapping 2016-12-19 2026-09-23 70 True False True True datamash_ops, tp_head_tool, bedtools_intersectbed, tp_sort_header_tool, upload1, comp1 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 59419 93628 8.416667 0
Introduction to Galaxy Analyses Galaxy Basics for everyone T00187 gxy.io/GTN:T00187 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-101-everyone/tutorial.html Visualisation 2019-11-14 2026-09-23 36 True False True True ggplot2_point, datamash_ops, csv_to_tabular, Grouping1, upload1, tp_sorted_uniq, Remove beginning1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium, Galaxy Norway Galaxy Switzerland, Galaxy Canada 0 29642 46064 9.933333 0
Introduction to Galaxy Analyses Introduction to Galaxy as an RDM platform T00575 gxy.io/GTN:T00575 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-rdm/tutorial.html Visualisation 2026-03-19 2026-09-23 4 True False False True column_remove_by_header, Summary_Statistics1, unzip, Add_a_column1, ggplot2_histogram, imagemagick_image_montage, export_remote Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada 0 618 738 9.933333 0
Introduction to Galaxy Analyses Very Short Introductions: QC T00436 gxy.io/GTN:T00436 https://training.galaxyproject.org//topics/introduction/tutorials/vsi_qc/tutorial.html Sequence contamination filtering, Validation, Sequencing quality control 2024-03-26 2026-09-23 5 True False False False multiqc, fastp Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 523 602 10.233333 0
Introduction to Galaxy Analyses From peaks to genes T00189 gxy.io/GTN:T00189 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-peaks2genes/tutorial.html 2016-03-29 2026-09-23 70 True False True True Add_a_column1, tp_replace_in_column, CONVERTER_interval_to_bed_0, Grouping1, tp_sort_header_tool, upload1, tp_tail_tool, get_flanks1, Cut1, gops_intersect_1 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 21718 35387 10.533333 0
Introduction to Galaxy Analyses Introduction to Genomics and Galaxy T00191 gxy.io/GTN:T00191 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-strands/tutorial.html 2017-10-18 2026-05-17 43 True False True True Filter1, cat1, gops_intersect_1, tp_sort_header_tool, tp_cat, gene2exon1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 21742 33758 9.666667 0
Introduction to Galaxy Analyses How to reproduce published Galaxy analyses T00192 gxy.io/GTN:T00192 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-reproduce/tutorial.html Visualisation 2021-08-25 2026-09-23 14 True False False True ggplot2_point, datamash_ops, csv_to_tabular, Grouping1, upload1, tp_sorted_uniq, Remove beginning1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 2558 3344 16.866667 0
Introduction to Galaxy Analyses Data Manipulation Olympics T00184 gxy.io/GTN:T00184 https://training.galaxyproject.org//topics/introduction/tutorials/data-manipulation-olympics/tutorial.html 2022-07-20 2026-09-23 18 True False False True {{version_cut_advanced}}, {{version_replace_text_line}}, {{version_paste}}, join1, Add_a_column1, {{version_cat}}, tabular_to_csv, wc_gnu, Remove beginning1, {{version_remove_columns_by_header}}, tp_split_on_column, {{version_join}}, regexColumn1, {{version_cut_columns}}, Count1, {{version_compute}}, {{version_wc}}, datamash_ops, Show beginning1, {{version_count}}, Grouping1, tp_sorted_uniq, Cut1, tp_cat, {{version_datamash}}, {{version_unique}}, {{version_replace_text_column}}, {{version_remove_beginning}}, upload1, {{version_select_first}}, {{version_sort}}, {{version_filter}}, Filter1, cat1, tp_sort_header_tool, {{version_split}} 0 7306 10358 11.416667 0
Introduction to Galaxy Analyses NGS data logistics T00188 gxy.io/GTN:T00188 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-ngs-data-managment/tutorial.html Generation, Sequence alignment, Genome indexing, Sequence contamination filtering, Validation, Formatting, Data handling, SNP detection, Sequencing quality control, Read mapping 2017-02-22 2026-09-23 41 True False True True multiqc, snpEff_build_gb, fastp, fasterq_dump, Filter1, bwa_mem2, bwa, samtools_stats, lofreq_indelqual, snpEff, lofreq_call, snpSift_extractFields, collapse_dataset, snpeff_sars_cov_2, picard_MarkDuplicates, bwa_mem, samtools_view, lofreq_viterbi Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada 0 22435 37482 9.300000 0
Introduction to Galaxy Analyses Options for using Galaxy S00075 gxy.io/GTN:S00075 https://training.galaxyproject.org//topics/introduction/tutorials/options-for-using-galaxy/slides.html 2017-05-24 2022-09-23 14 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050209 2.000000 0
Introduction to Galaxy Analyses IGV Introduction T00193 gxy.io/GTN:T00193 https://training.galaxyproject.org//topics/introduction/tutorials/igv-introduction/tutorial.html 2016-03-30 2023-02-17 11 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 8937 12360 5.300000 0
Introduction to Galaxy Analyses Upload data to Galaxy T00185 gxy.io/GTN:T00185 https://training.galaxyproject.org//topics/introduction/tutorials/dummy/tutorial.html 2022-09-23 2023-11-09 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 635 716 9.383333 0
Introduction to Galaxy Analyses Introduction to the Dataverse Integration in Galaxy T00582 gxy.io/GTN:T00582 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-intro-dataverse/tutorial.html 2026-06-25 2026-10-21 4 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 98 104 19.816667 0
Introduction to Galaxy Analyses Best Practices for Citing Galaxy T00566 gxy.io/GTN:T00566 https://training.galaxyproject.org//topics/introduction/tutorials/galaxy-cite/tutorial.html 2025-11-06 2026-08-28 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 481 515 9.383333 0
Materials Science Finding the muon stopping site with pymuon-suite in Galaxy T00402 gxy.io/GTN:T00402 https://training.galaxyproject.org//topics/materials-science/tutorials/muon-stopping-sites-muairss-uep/tutorial.html 2024-01-22 2026-09-23 3 True False True True pm_uep_opt, pm_muairss_read Galaxy Europe, Galaxy Canada Galaxy Belgium 0 474 570 11.833333 0
Metabolomics Introduction to Metabolomics S00076 gxy.io/GTN:S00076 https://training.galaxyproject.org//topics/metabolomics/tutorials/introduction/slides.html 2018-11-20 2023-01-12 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050209 2.000000 0
Metabolomics Mass spectrometry imaging: Examining the spatial distribution of analytes T00198 gxy.io/GTN:T00198 https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-analyte-distribution/tutorial.html Metabolomics 2019-02-21 2026-09-23 20 True False False True cardinal_filtering, cardinal_quality_report, cardinal_data_exporter, Filter1, cardinal_spectra_plots, cardinal_mz_images Galaxy Europe Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 3586 4951 9.683333 0
Metabolomics Mass spectrometry: GC-MS data processing (with XCMS, RAMClustR, RIAssigner, and matchms) T00344 gxy.io/GTN:T00344 https://training.galaxyproject.org//topics/metabolomics/tutorials/gc_ms_with_xcms/tutorial.html Metabolomics Correlation, Visualisation, Spectral library search, Filtering, Clustering, Imputation, Format validation, Formatting, Standardisation and normalisation, Data handling 2023-05-08 2026-07-23 6 True False False True abims_xcms_xcmsSet, matchms_formatter, matchms_similarity, riassigner, msnbase_readmsdata, ramclustr_define_experiment, waveica, xcms_merge, abims_xcms_fillPeaks, abims_xcms_group, ramclustr, msconvert, matchms_filtering, abims_xcms_retcor Galaxy Europe Galaxy Australia, Galaxy France, Galaxy Canada 0 3542 4441 4.050000 0
Metabolomics Mass spectrometry: LC-MS analysis T00195 gxy.io/GTN:T00195 https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms/tutorial.html Metabolomics Visualisation, Annotation, Data handling, Spectral analysis 2019-07-02 2026-07-23 14 True False False True xcms_plot_chromatogram, abims_xcms_xcmsSet, quality_metrics, msnbase_readmsdata, wsdl_hmdb, generic_filter, Batch_correction, xcms_merge, xcms_export_samplemetadata, abims_xcms_fillPeaks, abims_CAMERA_annotateDiffreport, abims_xcms_group, Univariate, abims_xcms_retcor Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 14522 23146 3.650000 0
Metabolomics Predicting EI+ mass spectra with QCxMS T00458 gxy.io/GTN:T00458 https://training.galaxyproject.org//topics/metabolomics/tutorials/qcxms-predictions/tutorial.html Metabolomics 2024-10-01 2026-07-23 2 True True False True split_file_to_collection, qcxms_neutral_run, tp_cut_tool, openbabel_compound_convert, ctb_im_conformers, qcxms_getres, qcxms_production_run, __FILTER_FAILED_DATASETS__, param_value_from_file, tp_cat, xtb_molecular_optimization Galaxy Europe Galaxy Australia, Galaxy Canada, Galaxy Belgium 0 2289954 4161822 5.716667 0
Metabolomics Mass spectrometry imaging: Finding differential analytes T00199 gxy.io/GTN:T00199 https://training.galaxyproject.org//topics/metabolomics/tutorials/msi-finding-nglycans/tutorial.html Metabolomics 2019-04-13 2026-07-23 10 True False False True cardinal_quality_report, Summary_Statistics1, Filter1, cardinal_classification, cardinal_segmentations, cardinal_mz_images, cardinal_preprocessing, cardinal_combine, maldi_quant_peak_detection, Grep1, maldi_quant_preprocessing, join_files_on_column_fuzzy Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 2404 3305 9.116667 0
Metabolomics Molecular formula assignment and mass recalibration with MFAssignR package T00535 gxy.io/GTN:T00535 https://training.galaxyproject.org//topics/metabolomics/tutorials/mfassignr/tutorial.html Metabolomics Visualisation, Annotation, Mass spectra calibration, Deisotoping 2025-05-19 2026-09-23 3 True False False True mfassignr_recallist, mfassignr_kmdnoise, mfassignr_histnoise, mfassignr_snplot, mfassignr_mfassign, mfassignr_isofiltr, mfassignr_mfassignCHO, mfassignr_findRecalSeries, mfassignr_recal 0 452 516 9.966667 0
Metabolomics Mass spectrometry: LC-MS preprocessing with XCMS T00197 gxy.io/GTN:T00197 https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-preprocessing/tutorial.html Metabolomics Visualisation, Annotation, Data handling, Spectral analysis 2020-02-04 2026-07-23 15 True True False False xcms_plot_chromatogram, abims_xcms_xcmsSet, idchoice, msnbase_readmsdata, intens_check, abims_xcms_summary, xcms_merge, xcms_export_samplemetadata, abims_xcms_fillPeaks, abims_CAMERA_annotateDiffreport, abims_xcms_group, abims_xcms_retcor Galaxy Main (US), Galaxy France Galaxy Europe, Galaxy Canada, Galaxy Norway 0 4434302 10061112 7.233333 0
Metabolomics Mass spectrometry: GC-MS analysis with the metaMS package T00194 gxy.io/GTN:T00194 https://training.galaxyproject.org//topics/metabolomics/tutorials/gcms/tutorial.html Metabolomics Visualisation, Data handling 2021-09-22 2026-09-23 10 True False False False xcms_plot_chromatogram, abims_xcms_xcmsSet, msnbase_readmsdata, xcms_merge, xcms_export_samplemetadata, abims_xcms_fillPeaks, abims_xcms_group, metams_runGC Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Canada Galaxy Norway 0 2135 3132 4.133333 0
Metabolomics Mass spectrometry: LC-MS data processing T00196 gxy.io/GTN:T00196 https://training.galaxyproject.org//topics/metabolomics/tutorials/lcms-dataprocessing/tutorial.html Metabolomics 2021-12-14 2026-07-23 9 True False False False quality_metrics, Multivariate, generic_filter, Batch_correction, intens_check, normalization Galaxy France Galaxy Europe, Galaxy Canada, Galaxy Norway 0 3638 4814 6.566667 0
Microbiome Introduction to Microbiome Analysis S00114 gxy.io/GTN:S00114 https://training.galaxyproject.org//topics/microbiome/tutorials/introduction/slides.html 2017-06-22 2024-08-08 5 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050209 2.000000 0
Microbiome Analyses of metagenomics data - The global picture T00385 gxy.io/GTN:T00385 https://training.galaxyproject.org//topics/microbiome/tutorials/general-tutorial/tutorial.html Metagenomics, Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding Taxonomic classification, Visualisation, Sequence clustering, Sequence read processing, Phylogenetic analysis, DNA barcoding, Sequencing quality control 2017-06-22 2026-09-23 5 True False False True humann2, mothur_summary_seqs, mothur_pre_cluster, mothur_make_biom, mothur_screen_seqs, mothur_make_shared, metaphlan2, mothur_align_seqs, taxonomy_krona_chart, metaphlan2krona, mothur_classify_seqs, humann2_renorm_table, humann2_regroup_table, mothur_count_seqs, mothur_classify_otu, mothur_unique_seqs, mothur_cluster_split, krona-text, mothur_make_group, mothur_merge_files, mothur_filter_seqs Galaxy Australia, Galaxy France, Galaxy Norway 0 12290 16523 5.766667 0
Microbiome Assembly of metagenomic sequencing data T00386 gxy.io/GTN:T00386 https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-assembly/tutorial.html Metagenomics, Sequence assembly Sequence assembly visualisation, Sequence composition calculation, Sequence file editing, Read pre-processing, Local alignment, Sequence contamination filtering, Statistical calculation, Primer removal, Read mapping, Visualisation, Variant calling, Sequence alignment analysis, Formatting, Data handling, Sequence trimming, Sequencing quality control, Genome assembly, Sequence assembly validation 2022-12-05 2026-09-23 12 True False True True bamtools, random_lines1, bowtie2, bandage_image, fastqc, seqtk_subseq, metaspades, ngsutils_bam_filter, coverm_contig, collection_column_join, megahit, cutadapt, bg_uniq, bandage_info, quast, tp_cat, filter_tabular, megahit_contig2fastg Galaxy Europe, Galaxy Main (US), Galaxy France 0 6301 8575 10.100000 0
Microbiome MGnify v5.0 Amplicon Pipeline T00552 gxy.io/GTN:T00552 https://training.galaxyproject.org//topics/microbiome/tutorials/mgnify-amplicon/tutorial.html Metagenomics, Taxonomy, Sequence analysis Sequence composition calculation, Alignment, Comparison, Nucleic acid design, Read pre-processing, Data formatting, Sequence contamination filtering, Statistical calculation, Sequencing quality control, Nucleic acid feature detection, Validation, Mapping, Visualisation, k-mer counting, DNA barcoding, Sequence trimming, Analysis, Sequence feature detection 2025-07-30 2026-09-23 4 True False False True multiqc, fastq_to_fasta_python, __MERGE_COLLECTION__, fastqc, __UNZIP_COLLECTION__, Add_a_column1, prinseq, lotus2, cmsearch_deoverlap, wc_gnu, param_value_from_file, filter_tabular, query_tabular, collection_element_identifiers, __FILTER_FROM_FILE__, ampvis2_load, trimmomatic, infernal_cmsearch, Grouping1, collection_column_join, ampvis2_heatmap, taxonomy_krona_chart, tp_find_and_replace, gops_concat_1, biom_convert, CONVERTER_uncompressed_to_gz, tp_awk_tool, cshl_fasta_formatter, mapseq, CONVERTER_gz_to_uncompressed, fastp, fastq_filter, bedtools_getfastabed, seqprep, bedtools_maskfastabed, fastq_dl, mgnify_seqprep, __FILTER_EMPTY_DATASETS__, collapse_dataset 0 643 832 13.400000 0
Microbiome 16S Microbial analysis with Nanopore data T00392 gxy.io/GTN:T00392 https://training.galaxyproject.org//topics/microbiome/tutorials/nanopore-16S-metagenomics/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding Taxonomic classification, Visualisation, Sequencing quality control, Sequence contamination filtering, Sequence composition calculation, Statistical calculation, Validation 2020-11-24 2026-09-23 6 True False False True multiqc, taxonomy_krona_chart, fastp, fastqc, kraken2, porechop, Remove beginning1, datamash_reverse, tp_replace_in_line Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy France, Galaxy Switzerland, Galaxy Canada 0 11325 15636 5.716667 0
Microbiome Antibiotic resistance detection T00394 gxy.io/GTN:T00394 https://training.galaxyproject.org//topics/microbiome/tutorials/plasmid-metagenomics-nanopore/tutorial.html Metagenomic sequencing, Public health and epidemiology, Metagenomics, Microbiology, Infectious disease, Sequence analysis, Antimicrobial resistance Mapping assembly, Sequence analysis, Antimicrobial resistance prediction, Sequence assembly visualisation, De-novo assembly, Scatter plot plotting, Box-Whisker plot plotting, Aggregation, Genome assembly, Pairwise sequence alignment 2019-06-25 2026-09-23 5 True False True True bandage_image, gfa_to_fa, nanoplot, miniasm, staramr_search, racon, unicycler, PlasFlow, minimap2 Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 4754 6407 7.650000 0
Microbiome Remove contamination and host reads T00568 gxy.io/GTN:T00568 https://training.galaxyproject.org//topics/microbiome/tutorials/host-removal/tutorial.html Validation, Read mapping, Sequencing quality control 2025-12-18 2026-09-23 4 True False True True multiqc, __ZIP_COLLECTION__, bowtie2 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 752 917 10.250000 0
Microbiome Taxonomic Profiling and Visualization of Metagenomic Data T00395 gxy.io/GTN:T00395 https://training.galaxyproject.org//topics/microbiome/tutorials/taxonomic-profiling/tutorial.html Metagenomics, Microbial ecology, Taxonomy, Sequence analysis Taxonomic classification, Visualisation, Statistical calculation, Aggregation, Genome annotation 2023-05-03 2026-09-23 9 True False True True taxonomy_krona_chart, kraken_biom, __UNZIP_COLLECTION__, interactive_tool_phinch, est_abundance, kraken2, metaphlan, interactive_tool_pavian, krakentools_kreport2krona Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium 0 17168 22566 5.550000 0
Microbiome Identification of the micro-organisms in a beer using Nanopore sequencing T00384 gxy.io/GTN:T00384 https://training.galaxyproject.org//topics/microbiome/tutorials/beer-data-analysis/tutorial.html Metagenomics, Microbial ecology, Taxonomy, Sequence analysis Taxonomic classification, Visualisation, Sequence contamination filtering, Sequence composition calculation, Statistical calculation, Aggregation, Sequencing quality control 2022-09-29 2026-09-23 6 True False True True taxonomy_krona_chart, fastp, fastqc, Filter1, kraken2, porechop, krakentools_kreport2krona Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 3774 5392 8.816667 0
Microbiome Metabarcoding of bacteria in dunnart faecal samples across Australia (wild + captive) using QIIME 2 T00598 gxy.io/GTN:T00598 https://training.galaxyproject.org//topics/microbiome/tutorials/dunnart_metabarcoding/tutorial.html Data formatting, Taxonomic classification, Visualisation, Primer removal, Demultiplexing, Sequence trimming, Read pre-processing 2026-10-07 2026-10-07 1 True False False True qiime2__diversity__alpha_group_significance, Remove beginning1, __BUILD_LIST__, collection_element_identifiers, qiime2__demux__summarize, __FLATTEN__, qiime2__composition__ancombc2_visualizer, regex1, qiime2_core__tools__export, biom_convert, qiime2__feature_classifier__fit_classifier_naive_bayes, qiime2__cutadapt__trim_paired, qiime2__diversity__alpha_rarefaction, qiime2__phylogeny__align_to_tree_mafft_fasttree, qiime2__feature_table__summarize, qiime2__feature_classifier__classify_sklearn, qiime2__feature_classifier__extract_reads, qiime2__taxa__filter_table, qiime2_core__tools__import, qiime2__taxa__barplot, Paste1, __RELABEL_FROM_FILE__, qiime2__composition__ancombc2, qiime2__diversity__core_metrics_phylogenetic, qiime2__feature_table__tabulate_seqs, qiime2__metadata__tabulate, qiime2__diversity__beta_group_significance, qiime2__dada2__denoise_paired, cutadapt Galaxy Australia Galaxy Switzerland 0 55 66 7.183333 0
Microbiome Building an amplicon sequence variant (ASV) table from 16S data using DADA2 T00441 gxy.io/GTN:T00441 https://training.galaxyproject.org//topics/microbiome/tutorials/dada-16S/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding Data analysis, Visualisation, Data deposition 2024-06-05 2026-09-23 13 True False True True dada2_filterAndTrim, __UNZIP_COLLECTION__, Add_a_column1, dada2_dada, dada2_plotQualityProfile, dada2_mergePairs, collection_element_identifiers, Grouping1, __SORTLIST__, dada2_removeBimeraDenovo, dada2_seqCounts, tp_replace_in_column, tp_replace_in_line, interactive_tool_phyloseq, tp_head_tool, dada2_makeSequenceTable, phyloseq_from_dada2, cat1, dada2_learnErrors, dada2_assignTaxonomyAddspecies Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France 0 11213 15907 5.616667 0
Microbiome Metatranscriptomics analysis using microbiome RNA-seq data (short) T00389 gxy.io/GTN:T00389 https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics-short/tutorial.html Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis Taxonomic classification, Visualisation, Sequence composition calculation, Species frequency estimation, Phylogenetic tree visualisation, Sequence comparison, Phylogenetic analysis, Read pre-processing, Sequence similarity search, Phylogenetic tree editing, Sequence alignment analysis, Statistical calculation, Validation, Primer removal, Sequence trimming, Sequencing quality control, Phylogenetic inference, Conversion 2020-02-13 2026-09-23 7 True False True True multiqc, fastqc, humann_renorm_table, graphlan_annotate, Cut1, taxonomy_krona_chart, graphlan, metaphlan, tp_find_and_replace, combine_metaphlan2_humann2, bg_sortmerna, humann, humann_rename_table, export2graphlan, humann_unpack_pathways, humann_split_stratified_table, tp_sort_header_tool, Grep1, humann_regroup_table, fastq_paired_end_interlacer, cutadapt Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Norway 0 1285 1598 11.183333 0
Microbiome Pathogen detection from (direct Nanopore) sequencing data using Galaxy - Foodborne Edition T00393 gxy.io/GTN:T00393 https://training.galaxyproject.org//topics/microbiome/tutorials/pathogen-detection-from-nanopore-foodborne-data/tutorial.html Metagenomics, Public health and epidemiology, Taxonomy, Sequence assembly, Pathology, Sequence analysis Mapping assembly, Taxonomic classification, Multiple sequence alignment, Antimicrobial resistance prediction, Sequence composition calculation, Sequence assembly visualisation, Phylogenetic tree generation, Phylogenetic tree reconstruction, Box-Whisker plot plotting, Cross-assembly, Statistical calculation, Aggregation, Sequence contamination filtering, Sequence assembly, Validation, Pairwise sequence alignment, Mapping, Visualisation, Variant calling, De-novo assembly, Phylogenetic tree analysis, Base-calling, Scatter plot plotting, Sequence alignment analysis, Multilocus sequence typing, Data handling, Sequencing quality control, Genome assembly 2023-01-26 2026-09-23 13 True False True True multiqc, fastqc, nanoplot, Add_a_column1, kraken2, add_line_to_file, samtools_fastx, bamtools_split_mapped, Remove beginning1, krakentools_kreport2krona, tp_split_on_column, param_value_from_file, regexColumn1, Count1, __BUILD_LIST__, collection_element_identifiers, bandage_image, split_file_to_collection, porechop, fasta2tab, Grouping1, collection_column_join, krakentools_extract_kraken_reads, tp_sorted_uniq, abricate, compose_text_param, samtools_coverage, __FILTER_FAILED_DATASETS__, Cut1, table_compute, tp_multijoin_tool, regex1, taxonomy_krona_chart, tp_find_and_replace, mlst, bcftools_consensus, newick_display, bcftools_norm, tp_replace_in_column, fasta_merge_files_and_filter_unique_sequences, Paste1, barchart_gnuplot, minimap2, clair3, flye, CONVERTER_gz_to_uncompressed, tp_head_tool, fastp, samtools_depth, bedtools_getfastabed, snpSift_filter, medaka_consensus_pipeline, tp_cut_tool, __FILTER_EMPTY_DATASETS__, clustalw, tab2fasta, ggplot2_heatmap, Grep1, fasttree, snpSift_extractFields, collapse_dataset Galaxy Europe, Galaxy Belgium Galaxy Australia 0 6419 9124 8.400000 0
Microbiome Calculating α and β diversity from microbiome taxonomic data T00447 gxy.io/GTN:T00447 https://training.galaxyproject.org//topics/microbiome/tutorials/diversity/tutorial.html Visualisation, Aggregation 2024-08-01 2026-09-23 8 True False True True krakentools_beta_diversity, krakentools_alpha_diversity Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium 0 11475 13777 4.100000 0
Microbiome Query an annotated mobile genetic element database to identify and annotate genetic elements (e.g. plasmids) in metagenomics data T00501 gxy.io/GTN:T00501 https://training.galaxyproject.org//topics/microbiome/tutorials/metaplasmidome_query/tutorial.html Genomics, Microbiology, Sequence analysis, Mobile genetic elements Visualisation, Pairwise sequence alignment 2025-01-07 2026-09-23 3 True False False True add_column_headers, join1, CONVERTER_fasta_to_tabular, Filter1, sort1, cat1, Add_a_column1, tp_replace_in_column, count_gff_features, Grouping1, ggplot2_histogram, tab2fasta, tp_sorted_uniq, tp_tail_tool, histogram_rpy, Cut1, minimap2, MQoutputfilter Galaxy France 0 635 717 7.266667 0
Microbiome Identifying Mycorrhizal Fungi from ITS2 sequencing using LotuS2 T00459 gxy.io/GTN:T00459 https://training.galaxyproject.org//topics/microbiome/tutorials/lotus2-identifying-fungi/tutorial.html DNA barcoding, Sequence feature detection 2024-09-30 2026-09-23 3 True False False True lotus2 Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium 0 1211 1474 7.633333 0
Microbiome Metatranscriptomics analysis using microbiome RNA-seq data T00388 gxy.io/GTN:T00388 https://training.galaxyproject.org//topics/microbiome/tutorials/metatranscriptomics/tutorial.html Metatranscriptomics, Microbial ecology, Taxonomy, Function analysis, Sequence analysis Taxonomic classification, Sequence composition calculation, Species frequency estimation, Sequence comparison, Read pre-processing, Phylogenetic tree editing, Sequencing quality control, Statistical calculation, Aggregation, Primer removal, Validation, Phylogenetic inference, Conversion, Visualisation, Phylogenetic tree visualisation, Phylogenetic analysis, Sequence alignment analysis, Sequence trimming, Sequence similarity search 2019-11-21 2026-09-23 7 True True True True multiqc, fastqc, Grouping1, humann_renorm_table, graphlan_annotate, Cut1, combine_metaphlan_humann, taxonomy_krona_chart, graphlan, metaphlan, tp_find_and_replace, bg_sortmerna, humann, humann_rename_table, export2graphlan, humann_unpack_pathways, humann_split_stratified_table, tp_sort_header_tool, Grep1, humann_regroup_table, fastq_paired_end_interlacer, cutadapt Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Europe, Galaxy Canada 0 4435885 10061410 6.850000 0
Microbiome Binning of metagenomic sequencing data T00387 gxy.io/GTN:T00387 https://training.galaxyproject.org//topics/microbiome/tutorials/metagenomics-binning/tutorial.html Metagenomics, Sequence assembly Sequence composition calculation, Sequence clustering, Sequence assembly validation, Genome comparison, Sequencing quality control, Statistical calculation, Sequence assembly, Validation, Read mapping, Genome annotation, Read binning 2023-12-05 2026-09-23 10 True False True True __BUILD_LIST__, concoct_merge_cut_up_clustering, metabat2_jgi_summarize_bam_contig_depths, binette, bowtie2, semibin, concoct_coverage_table, concoct_cut_up_fasta, concoct_extract_fasta_bins, drep_dereplicate, das_tool, metabat2, maxbin2, concoct, checkm_lineage_wf, samtools_sort, Fasta_to_Contig2Bin Galaxy Europe, Galaxy France, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada 0 8287 10118 5.533333 0
Microbiome Detection of shared microbial strains with SameStr T00591 gxy.io/GTN:T00591 https://training.galaxyproject.org//topics/microbiome/tutorials/samestr-strain-detection/tutorial.html Metagenomics, Microbial ecology, Taxonomy Taxonomic classification 2026-08-17 2026-09-23 2 True False False True pick_value, samestr_convert, __MERGE_COLLECTION__, metaphlan, samestr_merge, __FLATTEN__, __FILTER_EMPTY_DATASETS__, __APPLY_RULES__, kneaddata, samestr_filter, samestr_summarize, samtools_view, samestr_compare, samestr_stats Galaxy Europe, Galaxy Main (US), Galaxy Belgium 0 100 115 3.300000 0
Microbiome QIIME 2 Cancer Microbiome Intervention T00412 gxy.io/GTN:T00412 https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-cancer-microbiome-intervention/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding 2024-02-12 2024-03-14 3 external False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 628 986 13.550000 0
Microbiome Building and Annotating Metagenome-Assembled Genomes (MAGs) from Short Metagenomics Paired Reads T00569 gxy.io/GTN:T00569 https://training.galaxyproject.org//topics/microbiome/tutorials/mags-building/tutorial.html Metagenomics, Sequence assembly Sequence composition calculation, Genome comparison, Validation, Statistical calculation, Data handling, Sequencing quality control, Genome annotation, Sequence assembly validation 2025-12-18 2026-05-18 6 True False True False multiqc, Summary_Statistics1, join1, fasterq_dump, cat1, tp_replace_in_column, Grouping1, collection_column_join, drep_dereplicate, tp_sort_header_tool, collapse_dataset, bakta, __EXTRACT_DATASET__, Remove beginning1, Cut1, checkm_lineage_wf, kmetashot Galaxy Europe, Galaxy Main (US), Galaxy Switzerland Galaxy Canada 0 2221 2845 6.133333 0
Microbiome Indexing and profiling microbes with MetaSBT T00551 gxy.io/GTN:T00551 https://training.galaxyproject.org//topics/microbiome/tutorials/metasbt/tutorial.html Microbial ecology, Taxonomy 2025-08-25 2026-09-23 8 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 204 216 23.500000 0
Microbiome QIIME 2 Moving Pictures T00427 gxy.io/GTN:T00427 https://training.galaxyproject.org//topics/microbiome/tutorials/qiime2-moving-pictures/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding 2024-03-14 2026-02-18 2 external False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 940 1409 9.983333 0
Microbiome 16S Microbial Analysis with mothur (extended) T00390 gxy.io/GTN:T00390 https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding Taxonomic classification, Visualisation, Phylogenetic tree generation, Sequence clustering, Sequence read processing, Phylogenetic tree reconstruction, Phylogenetic analysis, Phylogenetic tree analysis, DNA barcoding, Sequencing quality control 2017-02-12 2026-09-23 6 True False False True mothur_summary_seqs, mothur_dist_shared, mothur_pre_cluster, mothur_make_biom, mothur_dist_seqs, mothur_count_groups, mothur_remove_lineage, mothur_heatmap_sim, mothur_remove_seqs, mothur_screen_seqs, mothur_chimera_vsearch, mothur_make_contigs, mothur_cluster, mothur_venn, XY_Plot_1, mothur_rarefaction_single, mothur_make_shared, mothur_align_seqs, mothur_taxonomy_to_krona, taxonomy_krona_chart, mothur_summary_single, newick_display, mothur_remove_groups, mothur_classify_seqs, mothur_count_seqs, mothur_seq_error, mothur_classify_otu, mothur_unique_seqs, mothur_cluster_split, mothur_get_groups, mothur_sub_sample, mothur_tree_shared, mothur_filter_seqs Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 15094 22090 5.133333 0
Microbiome 16S Microbial Analysis with mothur (short) T00391 gxy.io/GTN:T00391 https://training.galaxyproject.org//topics/microbiome/tutorials/mothur-miseq-sop-short/tutorial.html Microbial ecology, Taxonomy, Sequence analysis, Metabarcoding Taxonomic classification, Visualisation, Phylogenetic tree generation, Sequence clustering, Sequence read processing, Phylogenetic tree reconstruction, Phylogenetic analysis, Phylogenetic tree analysis, DNA barcoding, Sequencing quality control 2019-05-13 2026-09-23 7 True False True True mothur_summary_seqs, mothur_dist_shared, mothur_pre_cluster, mothur_dist_seqs, mothur_count_groups, mothur_remove_lineage, mothur_heatmap_sim, mothur_remove_seqs, mothur_screen_seqs, mothur_chimera_vsearch, mothur_cluster, mothur_venn, mothur_rarefaction_single, XY_Plot_1, mothur_make_shared, mothur_summary_single, newick_display, mothur_remove_groups, mothur_classify_seqs, mothur_count_seqs, mothur_classify_otu, mothur_unique_seqs, mothur_cluster_split, mothur_sub_sample, collapse_dataset, mothur_tree_shared, mothur_filter_seqs Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy France, Galaxy Canada 0 7139 11888 8.033333 0
Variant Analysis Pox virus genome analysis from tiled-amplicon sequencing data T00347 gxy.io/GTN:T00347 https://training.galaxyproject.org//topics/variant-analysis/tutorials/pox-tiled-amplicon/tutorial.html Sequence analysis, Generation, Multiple sequence alignment, Global alignment, Sequence alignment, Local alignment, Genome indexing, Sequence alignment analysis, Sequence contamination filtering, Primer removal, Sequencing quality control, Read mapping 2023-05-15 2024-03-20 4 True False False True EMBOSS: maskseq51, Add_a_column1, mimodd_info, __ZIP_COLLECTION__, param_value_from_file, ivar_consensus, datamash_ops, fasta_compute_length, fatovcf, compose_text_param, fasta_regex_finder, samtools_merge, Cut1, upload1, __APPLY_RULES__, samtools_view, rbc_mafft, fastp, qualimap_bamqc, ivar_trim, Grep1, bwa_mem Galaxy Europe Galaxy Main (US) 0 1427 1652 7.650000 0
Variant Analysis M. tuberculosis Variant Analysis T00319 gxy.io/GTN:T00319 https://training.galaxyproject.org//topics/variant-analysis/tutorials/tb-variant-analysis/tutorial.html Genomics, Microbiology, Sequence assembly, Genetic variation, Public health and epidemiology, Infectious disease Sequence analysis, Taxonomic classification, Genome visualisation, Variant calling, Sequence composition calculation, Phylogenetic tree generation, Antimicrobial resistance prediction, Phylogenetic tree visualisation, Global alignment, Sequence alignment, Local alignment, Sequence alignment analysis, Sequence contamination filtering, Statistical calculation, Validation, Sequencing quality control 2020-07-25 2026-09-23 33 True False True True multiqc, tb_variant_filter, fastqc, kraken2, mosdepth, snippy, EMBOSS:%20seqret84, tp_sed_tool, jvarkit_wgscoverageplotter, tb_profiler_profile, __FLATTEN__, samtools_stats, EMBOSS: seqret84, bcftools_consensus, tp_awk_tool, tbvcfreport, upload1, jbrowse, fastp, qualimap_bamqc 0 9105 13632 7.700000 0
Variant Analysis Avian influenza viral strain analysis from gene segment sequencing data T00308 gxy.io/GTN:T00308 https://training.galaxyproject.org//topics/variant-analysis/tutorials/aiv-analysis/tutorial.html Sequence analysis, Generation, Multiple sequence alignment, Data handling, Sequence file editing, De-novo assembly, Phylogenetic analysis, Sequence alignment, Genome indexing, Sequence alignment analysis, Sequence contamination filtering, Primer removal, Data retrieval, Sequencing quality control, Read mapping 2022-11-21 2024-10-04 10 True False False False rbc_mafft, fastp, Show beginning1, tp_find_and_replace, seqtk_subseq, qualimap_bamqc, vapor, collapse_dataset, upload1, Grep1, iqtree, bwa_mem, samtools_view, __RELABEL_FROM_FILE__, bamtools_split_ref, ivar_consensus Galaxy Europe, Galaxy Main (US) Galaxy Switzerland, Galaxy Canada 0 2697 3772 7.983333 0
Single Cell Analysis of plant scRNA-Seq Data with Scanpy T00250 gxy.io/GTN:T00250 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plant/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation 2021-04-08 2026-06-25 8 True False True True scanpy_normalize, anndata_manipulate, scanpy_inspect, anndata_import, scanpy_remove_confounders, scanpy_plot, scanpy_cluster_reduce_dimension, scanpy_filter Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium Galaxy France, Galaxy Canada, Galaxy Norway 0 3419 4241 7.150000 0
Transcriptomics Whole transcriptome analysis of Arabidopsis thaliana T00292 gxy.io/GTN:T00292 https://training.galaxyproject.org//topics/transcriptomics/tutorials/mirna-target-finder/tutorial.html Visualisation, Sequence composition calculation, RNA-Seq quantification, Read pre-processing, Gene expression analysis, Differential gene expression analysis, RNA-Seq analysis, Sequencing quality control, Primer removal, Sequence trimming, Validation, Read mapping 2021-04-08 2026-07-07 20 True True True True falco, multiqc, sample_seqs, deseq2, __MERGE_COLLECTION__, Filter1, sort1, filter_by_fasta_ids, cat1, rbc_mirdeep2_quantifier, rbc_mirdeep2_mapper, trim_galore, salmon, Cut1, targetfinder Galaxy Canada 0 4288756 9549172 8.833333 0
Sequence Analysis Identification and Evolutionary Analysis of Transcription-Associated Proteins in Streptophyte algae and Land plants T00511 gxy.io/GTN:T00511 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/tapscan-streptophyte-algae/tutorial.html Sequence analysis, Multiple sequence alignment, Phylogenetic tree editing, Phylogenetic inference (from molecular sequences), Phylogenetic analysis 2025-03-26 2026-09-23 3 True False True True rbc_mafft, Filter1, filter_by_fasta_ids, ete_treeviewer, quicktree, trimal, Remove beginning1, iqtree, Cut1, tapscan_classify Galaxy Europe, Galaxy Belgium Galaxy Canada 0 628 804 13.650000 0
Sequence Analysis NCBI BLAST+ against the MAdLand T00238 gxy.io/GTN:T00238 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-blast-against-the-madland/tutorial.html Sequence alignment analysis 2023-01-16 2026-09-23 10 True False False False bg_diamond, ncbi_blastx_wrapper, ncbi_blastp_wrapper Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 2139 2695 9.983333 0
Proteomics Introduction to proteomics, protein identification, quantification and statistical modelling S00080 gxy.io/GTN:S00080 https://training.galaxyproject.org//topics/proteomics/tutorials/introduction/slides.html 2017-12-01 2026-10-08 4 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050215 2.000000 0
Proteomics Statistical analysis of DIA data T00210 gxy.io/GTN:T00210 https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_MSstats/tutorial.html Spectrum calculation, Differential protein expression profiling, Tag-based peptide identification 2020-12-02 2023-11-09 9 True False False True Filter1, histogram_rpy, Grep1, msstats Galaxy Europe, Galaxy Main (US), Galaxy Belgium, Galaxy Norway Galaxy Australia, Galaxy Canada 0 1649 2256 9.883333 0
Proteomics metaQuantome 3: Taxonomy T00224 gxy.io/GTN:T00224 https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-taxonomy/tutorial.html Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics, Taxonomy Filtering, Functional clustering, Principal component visualisation, Differential protein expression analysis, Query and retrieval, Visualisation, Quantification, Statistical inference, Heat map generation, Indexing 2020-10-29 2026-09-23 15 True False False True metaquantome_sample, metaquantome_stat, metaquantome_filter, metaquantome_db, metaquantome_expand, metaquantome_viz Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 546 687 18.150000 0
Proteomics Machine Learning Modeling of Anticancer Peptides T00225 gxy.io/GTN:T00225 https://training.galaxyproject.org//topics/proteomics/tutorials/ml-modeling-of-anti-cancer-peptides/tutorial.html 2021-01-22 2026-09-23 9 True False False True pdaug_sequence_property_based_descriptors, pdaug_merge_dataframes, pdaug_ml_models, pdaug_addclasslabel, pdaug_basic_plots Galaxy Belgium 0 1234 1785 12.050000 0
Proteomics Clinical Metaproteomics 2: Discovery T00414 gxy.io/GTN:T00414 https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-2-discovery/tutorial.html Visualisation, Clustering, Filtering, Protein quantification, Heat map generation, Imputation, Statistical calculation, Standardisation and normalisation, Formatting, Principal component plotting 2024-02-06 2026-09-23 6 True False True True search_gui, query_tabular, dbbuilder, ident_params, peptide_shaker, Filter1, fasta_cli, fasta2tab, Grouping1, fasta_merge_files_and_filter_unique_sequences, maxquant, Grep1, Remove beginning1, msconvert, Cut1, tp_cat, filter_tabular Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada Galaxy France, Galaxy Belgium 0 548 672 21.716667 0
Proteomics Proteogenomics 3: Novel peptide analysis T00233 gxy.io/GTN:T00233 https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-novel-peptide-analysis/tutorial.html 2018-11-20 2026-09-23 21 True False True True pep_pointer, query_tabular, peptide_genomic_coordinate, ncbi_blastp_wrapper Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 2029 2837 13.483333 0
Proteomics Library Generation for DIA Analysis T00212 gxy.io/GTN:T00212 https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_lib_OSW/tutorial.html Visualisation, Clustering, Protein quantification, Heat map generation, Imputation, Statistical calculation, Standardisation and normalisation, Principal component plotting 2020-12-02 2025-06-02 12 True False False True TargetedFileConverter, diapysef, OpenSwathDecoyGenerator, Filter1, OpenSwathAssayGenerator, maxquant Galaxy Europe Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 5104 6557 4.683333 0
Proteomics Peptide Library Data Analysis T00227 gxy.io/GTN:T00227 https://training.galaxyproject.org//topics/proteomics/tutorials/peptide-library-data-analysis/tutorial.html 2021-01-22 2023-11-09 5 True False False True pdaug_peptide_sequence_analysis, pdaug_fishers_plot, pdaug_peptide_data_access, pdaug_sequence_property_based_descriptors, pdaug_tsvtofasta, pdaug_merge_dataframes, pdaug_addclasslabel, pdaug_basic_plots Galaxy Belgium 0 922 1201 10.850000 0
Proteomics Biomarker candidate identification T00213 gxy.io/GTN:T00213 https://training.galaxyproject.org//topics/proteomics/tutorials/biomarker_selection/tutorial.html 2019-06-13 2023-11-09 9 True False False True retr_pepatlas1, Jvenn, prot_features, tp_cut_tool, IDconverter, retrieve_from_hpa, rna_abbased_data, MQoutputfilter Galaxy France, Galaxy Belgium 0 2031 2735 9.633333 0
Proteomics Mass spectrometry imaging: Loading and exploring MSI data T00217 gxy.io/GTN:T00217 https://training.galaxyproject.org//topics/proteomics/tutorials/mass-spectrometry-imaging-loading-exploring-data/tutorial.html Proteomics 2018-11-27 2026-09-23 20 True False False True cardinal_quality_report, tp_sort_header_tool, cardinal_data_exporter, Grep1 Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 3254 4786 6.433333 0
Proteomics Peptide and Protein ID using SearchGUI and PeptideShaker T00229 gxy.io/GTN:T00229 https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-sg-ps/tutorial.html 2017-06-12 2026-09-23 29 True False False True search_gui, peptide_shaker, PeakPickerHiRes, Grep1, FileConverter 0 3643 5615 6.200000 0
Proteomics Peptide and Protein Quantification via Stable Isotope Labelling (SIL) T00230 gxy.io/GTN:T00230 https://training.galaxyproject.org//topics/proteomics/tutorials/protein-quant-sil/tutorial.html 2017-03-17 2026-09-23 33 True False False True IDPosteriorErrorProbability, FidoAdapter, Summary_Statistics1, IDConflictResolver, MultiplexResolver, IDScoreSwitcher, ProteinQuantifier, IDMapper, FeatureFinderMultiplex, tp_tail_tool, histogram_rpy, Grep1, FileInfo, PeptideIndexer, XTandemAdapter, TextExporter, FalseDiscoveryRate Galaxy Europe Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 1599 2140 9.833333 0
Proteomics Neoantigen 4: Variant Annotation T00546 gxy.io/GTN:T00546 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-variant-annotation/tutorial.html 2025-01-14 2026-09-23 6 True False False False query_tabular, pep_pointer, tab2fasta, Convert characters1, cut, select, column_regex_find_and_replace, regexColumn1 0 276 305 12.800000 0
Proteomics Clinical Metaproteomics 5: Data Interpretation T00417 gxy.io/GTN:T00417 https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-5-data-interpretation/tutorial.html Prediction and recognition, Visualisation 2024-02-06 2026-09-23 5 True False True True unipept, msstatstmt, Grep1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 460 562 27.283333 0
Proteomics Detection and quantitation of N-termini (degradomics) via N-TAILS T00226 gxy.io/GTN:T00226 https://training.galaxyproject.org//topics/proteomics/tutorials/ntails/tutorial.html Proteomics 2017-02-14 2025-04-08 16 True False False True IDConflictResolver, FileFilter, FileMerger, ConsensusID, IDMapper, IDFilter, MzTabExporter, MSGFPlusAdapter, FeatureFinderMultiplex, PeptideIndexer, HighResPrecursorMassCorrector, FalseDiscoveryRate, IDMerger 0 1061 1396 7.300000 0
Proteomics Clinical Metaproteomics 4: Quantitation T00416 gxy.io/GTN:T00416 https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-4-quantitation/tutorial.html Visualisation, Clustering, Protein quantification, Heat map generation, Imputation, Statistical calculation, Standardisation and normalisation, Principal component plotting 2024-02-06 2026-09-23 6 True False True True Cut1, maxquant, Grep1, Grouping1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 332 404 23.000000 0
Proteomics metaQuantome 2: Function T00223 gxy.io/GTN:T00223 https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-function/tutorial.html Proteomics, Proteogenomics, Metatranscriptomics, Microbial ecology, Metagenomics Filtering, Functional clustering, Principal component visualisation, Differential protein expression analysis, Query and retrieval, Visualisation, Quantification, Statistical inference, Heat map generation, Indexing 2020-10-29 2026-09-23 15 True False False True metaquantome_sample, metaquantome_stat, metaquantome_filter, metaquantome_db, metaquantome_expand, metaquantome_viz Galaxy Europe, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Norway 0 519 694 15.683333 0
Proteomics Peptide and Protein ID using OpenMS tools T00228 gxy.io/GTN:T00228 https://training.galaxyproject.org//topics/proteomics/tutorials/protein-id-oms/tutorial.html Formatting, Filtering 2017-10-16 2026-09-23 33 True False False True IDPosteriorErrorProbability, FidoAdapter, IDScoreSwitcher, ConsensusID, IDFilter, MSGFPlusAdapter, PeakPickerHiRes, Grep1, PeptideIndexer, FileInfo, msconvert, XTandemAdapter, TextExporter, FalseDiscoveryRate, IDMerger Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 3902 6357 8.083333 0
Proteomics Single Cell Proteomics data analysis with bioconductor-scp T00502 gxy.io/GTN:T00502 https://training.galaxyproject.org//topics/proteomics/tutorials/bioconductor-scp/tutorial.html Visualisation, Expression analysis 2025-02-07 2026-09-23 3 True False False False bioconductor_scp, Grouping1 Galaxy Europe, Galaxy Australia, Galaxy Canada 0 645 718 8.816667 0
Proteomics metaQuantome 1: Data creation T00222 gxy.io/GTN:T00222 https://training.galaxyproject.org//topics/proteomics/tutorials/metaquantome-data-creation/tutorial.html Proteomics, Proteogenomics, Biodiversity, Taxonomy Visualisation, Formatting, Filtering, Prediction and recognition, Label-free quantification 2020-10-16 2026-09-23 21 True False False True regex1, msconvert, search_gui, query_tabular, peptide_shaker, Filter1, tp_replace_in_column, unipept, Grep1, Remove beginning1, tp_replace_in_line, flashlfq, Cut1 Galaxy Europe Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 1022 1644 9.283333 0
Proteomics Clinical Metaproteomics 1: Database-Generation T00413 gxy.io/GTN:T00413 https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-1-database-generation/tutorial.html de Novo sequencing, Expression analysis, Protein identification, Tag-based peptide identification, Target-Decoy 2024-02-06 2026-09-23 8 True False True True metanovo, dbbuilder, uniprotxml_downloader, fasta_merge_files_and_filter_unique_sequences Galaxy Europe, Galaxy Australia Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 891 1229 19.383333 0
Proteomics Neoantigen 3: PepQuery2 Verification T00544 gxy.io/GTN:T00544 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-peptide-verification/tutorial.html Formatting, Filtering 2025-01-14 2026-09-23 5 True False False False query_tabular, tab2fasta, pepquery2, ncbi_blastp_wrapper, msconvert Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada Galaxy Switzerland, Galaxy Belgium 0 290 316 12.750000 0
Proteomics Clinical Metaproteomics 3: Verification T00415 gxy.io/GTN:T00415 https://training.galaxyproject.org//topics/proteomics/tutorials/clinical-mp-3-verification/tutorial.html 2024-02-06 2026-09-23 8 True False True True query_tabular, dbbuilder, uniprotxml_downloader, Filter1, Grouping1, fasta_merge_files_and_filter_unique_sequences, collapse_dataset, pepquery2, Remove beginning1, Cut1, tp_cat Galaxy Europe, Galaxy Canada, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Switzerland 0 378 464 24.950000 0
Proteomics Neoantigen 2: Database merge and FragPipe discovery T00540 gxy.io/GTN:T00540 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fragpipe-discovery/tutorial.html 2025-01-14 2026-09-23 5 True False False False query_tabular, validate_fasta_database, fragpipe, fasta_merge_files_and_filter_unique_sequences, collapse_dataset, Grep1, Remove beginning1, fragpipe_manifest_generator Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy Canada 0 591 672 10.766667 0
Proteomics DIA Analysis using OpenSwathWorkflow T00211 gxy.io/GTN:T00211 https://training.galaxyproject.org//topics/proteomics/tutorials/DIA_Analysis_OSW/tutorial.html Formatting, Filtering 2020-12-02 2025-05-20 12 True False False True pyprophet_score, pyprophet_peptide, pyprophet_merge, pyprophet_export, OpenSwathWorkflow, Grep1, msconvert, pyprophet_protein Galaxy Europe Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 3726 5148 8.100000 0
Proteomics Proteogenomics 1: Database Creation T00231 gxy.io/GTN:T00231 https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbcreation/tutorial.html Sequence annotation, Variant calling, RNA-Seq analysis, Statistical calculation, Transcriptome assembly, Sequence alignment 2018-11-20 2026-09-23 31 True False True True sqlite_to_tabular, query_tabular, translate_bed, cat_multi_datasets, stringtie, tp_replace_in_column, fasta2tab, bed_to_protein_map, fasta_merge_files_and_filter_unique_sequences, gffcompare, hisat2, tab2fasta, custom_pro_db, gffcompare_to_bed, freebayes, filter_tabular, regexColumn1 Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium Galaxy Canada 0 6687 10653 6.850000 0
Proteomics Metaproteomics tutorial T00221 gxy.io/GTN:T00221 https://training.galaxyproject.org//topics/proteomics/tutorials/metaproteomics/tutorial.html Proteomics, Proteogenomics, Biodiversity, Taxonomy Prediction and recognition, Visualisation 2017-06-28 2026-09-23 43 True False True True sqlite_to_tabular, search_gui, query_tabular, peptide_shaker, unipept Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 3362 5183 9.950000 0
Proteomics Label-free data analysis using MaxQuant T00218 gxy.io/GTN:T00218 https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-label-free/tutorial.html Visualisation, Clustering, Spectrum calculation, Protein quantification, Heat map generation, Differential protein expression profiling, Imputation, Statistical calculation, Standardisation and normalisation, Principal component plotting, Tag-based peptide identification 2020-04-29 2025-05-21 14 True False False True msstats, Filter1, Add_a_column1, tp_sort_header_tool, maxquant, histogram_rpy, Grep1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy Belgium, Galaxy Norway Galaxy Australia, Galaxy Canada 0 21618 31172 3.716667 0
Proteomics Neoantigen 5a: Predicting HLA Binding T00545 gxy.io/GTN:T00545 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-predicting-hla-binding/tutorial.html Read mapping, Genetic variation analysis 2025-01-14 2026-09-23 5 True False False False seq2hla, query_tabular, optitype, tp_awk_tool Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada 0 294 320 15.200000 0
Proteomics EncyclopeDIA T00215 gxy.io/GTN:T00215 https://training.galaxyproject.org//topics/proteomics/tutorials/encyclopedia/tutorial.html Formatting, Filtering 2021-06-21 2026-09-23 13 True False True True msconvert, encyclopedia_searchtolib, encyclopedia_quantify Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium 0 2295 3049 8.850000 0
Proteomics MaxQuant and MSstats for the analysis of label-free data T00219 gxy.io/GTN:T00219 https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-dda-lfq/tutorial.html Visualisation, Clustering, Spectrum calculation, Protein quantification, Heat map generation, Differential protein expression profiling, Imputation, Statistical calculation, Standardisation and normalisation, Principal component plotting, Tag-based peptide identification 2021-02-17 2025-09-22 19 True False True True ggplot2_heatmap2, datamash_ops, Summary_Statistics1, msstats, Filter1, tp_easyjoin_tool, uniprot, tp_replace_in_column, fasta2tab, maxquant, Grep1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 9577 15035 6.300000 0
Proteomics Proteogenomics 2: Database Search T00232 gxy.io/GTN:T00232 https://training.galaxyproject.org//topics/proteomics/tutorials/proteogenomics-dbsearch/tutorial.html Peptide database search, Conversion 2018-11-20 2026-09-23 26 True False True True search_gui, query_tabular, ident_params, peptide_shaker, mz_to_sqlite, tab2fasta Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium 0 1821 2624 12.333333 0
Proteomics Multiomics data analysis using MultiGSEA T00503 gxy.io/GTN:T00503 https://training.galaxyproject.org//topics/proteomics/tutorials/multiGSEA-tutorial/tutorial.html Gene-set enrichment analysis, Pathway analysis, Aggregation 2025-03-10 2026-09-23 3 True False False True Filter1, tp_grep_tool, multigsea Galaxy Europe, Galaxy Canada, Galaxy Belgium Galaxy Australia 0 776 887 5.816667 0
Proteomics Secretome Prediction T00235 gxy.io/GTN:T00235 https://training.galaxyproject.org//topics/proteomics/tutorials/secretome-prediction/tutorial.html 2017-04-13 2026-09-23 16 True False False True term_id_vs_term_name, Filter1, tp_easyjoin_tool, uniprot, tp_cut_tool, bg_uniq, Convert characters1, tp_sorted_uniq, Grep1, wolf_psort, get_subontology_from, comp1 0 751 1072 8.000000 0
Proteomics Neoantigen 1a: Fusion-Database-Generation T00541 gxy.io/GTN:T00541 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-fusion-database-generation/tutorial.html Sequence alignment 2025-01-14 2026-09-23 5 True False False False regex1, query_tabular, CONVERTER_gz_to_uncompressed, tp_awk_tool, arriba, tab2fasta, arriba_get_filters, rna_star Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy Canada 0 454 562 10.800000 0
Proteomics Neoantigen 5b: IEDB binding Validated Neopeptides T00542 gxy.io/GTN:T00542 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-hla-binding-novel-peptides/tutorial.html 2025-01-14 2026-09-23 6 True False False False query_tabular, iedb_api, Filter1, fasta_to_tabular, table_compute 0 279 301 9.000000 0
Proteomics Protein FASTA Database Handling T00214 gxy.io/GTN:T00214 https://training.galaxyproject.org//topics/proteomics/tutorials/database-handling/tutorial.html Proteomics 2017-02-14 2025-04-08 30 True False False True dbbuilder, addValue, fasta2tab, fasta_merge_files_and_filter_unique_sequences, DecoyDatabase, tab2fasta Galaxy Europe, Galaxy Australia Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 5210 8088 8.533333 0
Proteomics Annotating a protein list identified by LC-MS/MS experiments T00234 gxy.io/GTN:T00234 https://training.galaxyproject.org//topics/proteomics/tutorials/proteome_annotation/tutorial.html 2019-09-12 2026-09-23 12 True False True True Jvenn, cluter_profiler, reactome_analysis, IDconverter, retrieve_from_hpa, rna_abbased_data, MQoutputfilter Galaxy Belgium Galaxy France 0 3406 4845 8.566667 0
Proteomics MaxQuant and MSstats for the analysis of TMT data T00220 gxy.io/GTN:T00220 https://training.galaxyproject.org//topics/proteomics/tutorials/maxquant-msstats-tmt/tutorial.html Visualisation, Clustering, Protein quantification, Heat map generation, Imputation, Statistical calculation, Standardisation and normalisation, Principal component plotting 2021-08-13 2025-01-08 11 True False False True msstatstmt, maxquant Galaxy Europe, Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy Switzerland, Galaxy Canada 0 4729 6271 4.450000 0
Proteomics Neoantigen 1b: Non-Reference-Database-Generation T00543 gxy.io/GTN:T00543 https://training.galaxyproject.org//topics/proteomics/tutorials/neoantigen-non-reference-database-generation/tutorial.html Sequence annotation, Variant calling, RNA-Seq analysis, Statistical calculation, Transcriptome assembly, Sequence alignment 2025-01-14 2026-09-23 7 True False False False sqlite_to_tabular, CONVERTER_gz_to_uncompressed, translate_bed, concatenate, stringtie, fasta2tab, bed_to_protein_map, fasta_merge_files_and_filter_unique_sequences, gffcompare, hisat2, tab2fasta, custom_pro_db, gffcompare_to_bed, column_regex_find_and_replace, regexColumn1, freebayes 0 357 409 14.383333 0
Proteomics Label-free versus Labelled - How to Choose Your Quantitation Method T00216 gxy.io/GTN:T00216 https://training.galaxyproject.org//topics/proteomics/tutorials/labelfree-vs-labelled/tutorial.html 2017-03-17 2025-05-27 18 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 7931 12663 2.650000 0
Sequence Analysis Quality Control T00239 gxy.io/GTN:T00239 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-control/tutorial.html Sequence composition calculation, Read pre-processing, Scatter plot plotting, Box-Whisker plot plotting, Statistical calculation, Validation, Primer removal, Sequence trimming, Sequencing quality control 2016-10-04 2026-09-23 50 True True True True multiqc, fastqe, nanoplot, fastqc, pycoqc, cutadapt Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy France, Galaxy Canada 0 4548067 10264296 8.966667 0
Sequence Analysis Screening assembled genomes for contamination using NCBI FCS T00439 gxy.io/GTN:T00439 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/ncbi-fcs/tutorial.html Sequence trimming, Sequence contamination filtering, Sequence assembly validation 2024-04-16 2026-09-23 3 True False False True ncbi_fcs_gx, ncbi_fcs_adaptor Galaxy Europe, Galaxy Main (US), Galaxy Canada, Galaxy Belgium Galaxy Australia, Galaxy Switzerland 0 2841 3712 3.733333 0
Sequence Analysis Clean and manage Sanger sequences from raw files to aligned consensus T00383 gxy.io/GTN:T00383 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/Manage_AB1_Sanger/tutorial.html Taxonomic classification, Visualisation, Sequence clustering, Sequence file editing, Sequence read processing, Demultiplexing, Phylogenetic analysis, DNA barcoding, Data handling, Sequencing quality control 2024-01-08 2026-09-23 3 True False False True unzip, fastq_to_tabular, fastq_masker_by_quality, collection_element_identifiers, __FILTER_FROM_FILE__, filter_by_fasta_ids, cshl_fastx_reverse_complement, mothur_degap_seqs, __SORTLIST__, regex1, seqtk_mergepe, ab1_fastq_converter, fastq_groomer, cshl_fastq_to_fasta, seqtk_trimfq, aligned_to_consensus, tab2fasta, qiime_align_seqs, mothur_merge_files, ncbi_blastn_wrapper Galaxy Europe, Galaxy France Galaxy Canada 0 4678 5737 6.450000 0
Sequence Analysis Primer and primer scheme design for pan-specific detection and sequencing of viral pathogens across genotypes T00512 gxy.io/GTN:T00512 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/viral_primer_design/tutorial.html Sequence analysis, Multiple sequence alignment, Sequence alignment analysis, PCR primer design, Global alignment, Sequence alignment, Local alignment 2025-03-20 2026-09-23 4 True False False True rbc_mafft, ncbi_makeblastdb, split_file_to_collection, varvamp, EMBOSS: degapseq20, fasta_compute_length Galaxy Europe, Galaxy Canada, Galaxy Belgium 0 1430 1685 2.833333 0
Sequence Analysis Mapping T00237 gxy.io/GTN:T00237 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/mapping/tutorial.html Mapping Genome visualisation, Read mapping, Sequence alignment analysis, Data handling 2016-10-04 2026-09-23 48 True True True True bowtie2, bamFilter, jbrowse, samtools_stats Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 4499553 10168895 9.433333 0
Sequence Analysis Quality and contamination control in bacterial isolate using Illumina MiSeq Data T00446 gxy.io/GTN:T00446 https://training.galaxyproject.org//topics/sequence-analysis/tutorials/quality-contamination-control/tutorial.html Whole genome sequencing, Genomics, Microbiology, Microbial ecology Taxonomic classification, Visualisation, Expression analysis, Cross-assembly, Sequence contamination filtering, Statistical calculation, Sequencing quality control, Read mapping 2024-07-15 2026-09-23 6 True False True True falco, fastp, est_abundance, kraken2, upload1, recentrifuge Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada 0 2489 3226 9.950000 0
Single Cell Generating a single cell matrix using Alevin T00245 gxy.io/GTN:T00245 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin/tutorial.html RNA-Seq quantification, Gene expression analysis, Sequence composition calculation 2021-03-03 2026-09-23 26 True False True True _dropletBarcodePlot, dropletutils_read_10x, _salmon_kallisto_mtx_to_10x, anndata_manipulate, join1, dropletutils_empty_drops, anndata_inspect, alevin, Cut1, sceasy_convert, _ensembl_gtf2gene_list Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Belgium 0 4158 6185 10.750000 0
Single Cell Pre-processing of 10X Single-Cell ATAC-seq Datasets T00335 gxy.io/GTN:T00335 https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-preprocessing-tenx/tutorial.html Generation, Mapping, Visualisation, Sequence composition calculation, Gene regulatory network analysis, Expression profile clustering, Imputation, Principal component visualisation, Sequence alignment, Genome indexing, Differential gene expression analysis, Statistical calculation, Sequencing quality control, Read mapping, Peak calling, Enrichment analysis 2023-04-24 2026-09-23 11 True False False True falco, fastqc, macs2_callpeak, anndata_inspect, scanpy_plot, sinto_fragments, episcanpy_preprocess, episcanpy_build_matrix, tp_sorted_uniq, sinto_barcode, bwa_mem, bedtools_sortbed Galaxy Main (US), Galaxy Australia Galaxy Canada, Galaxy Belgium 0 6994 8215 2.466667 0
Single Cell Pre-processing of 10X Single-Cell RNA Datasets T00252 gxy.io/GTN:T00252 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing-tenx/tutorial.html Loading, Sequencing quality control, Community profiling, Validation, Sequence alignment 2019-09-11 2026-09-23 14 True False True True dropletutils, rna_starsolo, multiqc Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 14987 19342 5.950000 0
Single Cell Single-cell quality control with scater T00255 gxy.io/GTN:T00255 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scater-qc/tutorial.html Sequence visualisation, Sequencing quality control, Read pre-processing 2019-10-23 2025-02-14 6 True False False True scater_create_qcmetric_ready_sce, scater_plot_pca, scater_plot_dist_scatter, scater_filter Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Belgium, Galaxy Norway Galaxy Canada 0 873 970 6.900000 0
Single Cell Bulk RNA Deconvolution with MuSiC T00240 gxy.io/GTN:T00240 https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music/tutorial.html 2022-02-11 2026-09-23 12 True False True True music_deconvolution, music_inspect_eset, music_construct_eset Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium 0 4879 6025 3.950000 0
Single Cell Pre-processing of Single-Cell RNA Data T00251 gxy.io/GTN:T00251 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-preprocessing/tutorial.html Sequence alignment analysis, Sequencing quality control, Data handling, RNA-Seq quantification, Validation, Read summarisation, Sequence alignment 2019-02-22 2026-09-23 6 True True False True multiqc, tp_sed_tool, __FLATTEN__, samtools_stats, umi_tools_count, collection_column_join, bamFilter, featurecounts, umi_tools_extract, rna_star Galaxy Europe Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 4434482 10059579 8.933333 0
Single Cell Converting between common single cell data formats T00418 gxy.io/GTN:T00418 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-ingest/tutorial.html Loading, Community profiling 2024-02-13 2026-06-25 5 True False False True dropletutils_read_10x, scanpy_filter_cells, datamash_transpose, join1, Filter1, dropletutils, anndata_inspect, fastq_to_tabular, sceasy_convert, tp_cut_tool, seurat_read10x, anndata_ops, monocle3_create, tp_tail_tool, Cut1, tabular_to_fastq, regexColumn1 Galaxy Main (US), Galaxy Belgium 0 3429 3981 4.066667 0
Single Cell An introduction to scRNA-seq data analysis S00084 gxy.io/GTN:S00084 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-intro/slides.html 2021-01-29 2025-02-13 8 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4394683 9936179 2.000000 0
Single Cell Generating a single cell matrix using Alevin and combining datasets (bash + R) T00378 gxy.io/GTN:T00378 https://training.galaxyproject.org//topics/single-cell/tutorials/alevin-commandline/tutorial.html 2023-12-08 2025-04-22 5 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 870 1126 9.516667 0
Single Cell Single-cell ATAC-seq standard processing with SnapATAC2 T00445 gxy.io/GTN:T00445 https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-standard-processing-snapatac2/tutorial.html Generation, Gene expression profiling, Expression profile clustering, Sequence alignment, Principal component visualisation, Genome indexing, Differential gene expression analysis, Read mapping, Essential dynamics, Dimensionality reduction 2024-07-11 2026-09-28 7 True False False True scanpy_normalize, anndata_manipulate, scanpy_inspect, snapatac2_clustering, snapatac2_plotting, anndata_inspect, scanpy_plot, snapatac2_preprocessing, fasta_compute_length, bwa_mem, Cut1, replace_column_with_key_value_file, snapatac2_peaks_and_motif, scanpy_filter 0 2670 3101 4.033333 0
Single Cell Importing files from public atlases T00374 gxy.io/GTN:T00374 https://training.galaxyproject.org//topics/single-cell/tutorials/EBI-retrieval/tutorial.html 2023-11-14 2026-06-25 9 True False True True scanpy_read_10x, tp_find_and_replace, hca_matrix_downloader, seurat_read10x, tp_grep_tool, anndata_ops, sceasy_convert, regexColumn1, retrieve_scxa 0 829 1037 12.233333 0
Single Cell Filter, plot, and explore single cell RNA-seq data with Seurat (R) T00366 gxy.io/GTN:T00366 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExploreRStudio/tutorial.html 2023-10-02 2025-03-11 11 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4131 4655 3.316667 0
Single Cell Clustering 3K PBMCs with Scanpy T00254 gxy.io/GTN:T00254 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-scanpy-pbmc3k/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation 2019-12-19 2026-09-23 19 True True True True scanpy_normalize, anndata_manipulate, scanpy_inspect, anndata_import, datamash_ops, scanpy_remove_confounders, anndata_inspect, scanpy_plot, scanpy_filter, scanpy_cluster_reduce_dimension, celltypist Galaxy Europe Galaxy Canada, Galaxy Belgium 0 4437143 10063979 8.250000 0
Single Cell Understanding Barcodes T00256 gxy.io/GTN:T00256 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-umis/tutorial.html Sequencing quality control, Sequence composition calculation, Statistical calculation 2019-02-20 2026-09-23 13 True False True True umi_tools_extract, seq_filter_by_id, fastqc Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 7318 9048 5.450000 0
Single Cell Removing the effects of the cell cycle T00248 gxy.io/GTN:T00248 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_cell-cycle/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation 2023-01-25 2026-09-23 17 True False False True anndata_manipulate, scanpy_inspect, sort1, addValue, tp_easyjoin_tool, cat1, anndata_inspect, scanpy_plot, scanpy_regress_variable, scanpy_cluster_reduce_dimension, table_compute 0 2579 2997 3.050000 0
Single Cell Combining single cell datasets after pre-processing T00246 gxy.io/GTN:T00246 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_alevin-combine-datasets/tutorial.html 2022-09-08 2026-09-23 24 True False True True anndata_manipulate, anndata_inspect, tp_replace_in_column, anndata_ops, Paste1, Cut1 Galaxy Europe, Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy Switzerland 0 2920 4008 11.300000 0
Single Cell Downstream Single-cell RNA analysis with RaceID T00253 gxy.io/GTN:T00253 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-raceid/tutorial.html Molecular dynamics, Expression analysis, Expression profile clustering 2019-03-25 2025-02-14 7 True False False True datamash_ops, tp_head_tool, datamash_transpose, tp_sed_tool, raceid_inspectclusters, raceid_inspecttrajectory, raceid_trajectory, raceid_clustering, raceid_filtnormconf Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium, Galaxy Norway Galaxy Australia, Galaxy Canada 0 1309 1528 7.750000 0
Single Cell Comparing inferred cell compositions using MuSiC deconvolution T00243 gxy.io/GTN:T00243 https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-4-compare/tutorial.html 2023-01-20 2026-09-23 12 True False False True music_compare Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium 0 447 603 11.366667 0
Single Cell Filter, plot and explore single-cell RNA-seq data with Scanpy (Python) T00358 gxy.io/GTN:T00358 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-jupyter_basic-pipeline/tutorial.html 2023-08-25 2026-09-23 14 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4100 4840 4.666667 0
Single Cell Filter, plot, and explore single cell RNA-seq data with Seurat T00438 gxy.io/GTN:T00438 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_FilterPlotandExplore_SeuratTools/tutorial.html 2024-04-09 2025-03-11 10 True False False True seurat_find_clusters, seurat_scale_data, seurat_find_markers, seurat_filter_cells, seurat_normalise_data, seurat_run_umap, seurat_run_pca, seurat_read10x, seurat_plot, seurat_find_variable_genes, seurat_find_neighbours, retrieve_scxa Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France 0 3149 3704 5.916667 0
Single Cell Scanpy Parameter Iterator T00357 gxy.io/GTN:T00357 https://training.galaxyproject.org//topics/single-cell/tutorials/scanpy_parameter_iterator/tutorial.html 2023-07-19 2026-06-25 9 True False False True scanpy_run_umap, scanpy_run_tsne, scanpy_parameter_iterator, scanpy_compute_graph, scanpy_plot_embed, scanpy_find_cluster Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy Switzerland 0 463 501 10.633333 0
Single Cell Filter, plot and explore single-cell RNA-seq data with Scanpy T00247 gxy.io/GTN:T00247 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_basic-pipeline/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation 2021-03-24 2025-04-23 24 True False True True anndata_manipulate, join1, scanpy_plot, anndata_ops, scanpy_cluster_reduce_dimension, interactive_tool_cellxgene_vip, scanpy_inspect, scanpy_run_umap, scanpy_filter_genes, scanpy_run_pca, scanpy_normalise_data, Cut1, scanpy_filter, scanpy_run_tsne, scanpy_compute_graph, scanpy_find_cluster, scanpy_plot_embed, retrieve_scxa, scanpy_normalize, scanpy_filter_cells, anndata_inspect, scanpy_find_markers, scanpy_find_variable_genes, scanpy_scale_data 0 6308 9659 7.583333 0
Single Cell Evaluating Reference Data for Bulk RNA Deconvolution T00513 gxy.io/GTN:T00513 https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-deconvolution-evaluate/tutorial.html Visualisation, Annotation 2025-02-02 2026-09-23 5 True False False True datamash_transpose, join1, Add_a_column1, Remove beginning1, ggplot2_violin, Count1, __DUPLICATE_FILE_TO_COLLECTION__, tp_sed_tool, collection_column_join, bg_column_arrange_by_header, Cut1, annotatemyids, table_compute, tp_multijoin_tool, tp_awk_tool, Paste1, music_deconvolution, ggplot2_point, music_construct_eset, tp_easyjoin_tool, tp_cut_tool, collapse_dataset Galaxy Europe, Galaxy Main (US), Galaxy Australia Galaxy Canada, Galaxy Belgium 0 308 342 14.800000 0
Single Cell Converting NCBI Data to the AnnData Format T00380 gxy.io/GTN:T00380 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-ncbi-anndata/tutorial.html 2023-12-13 2026-06-25 8 True False True True scanpy_filter_cells, anndata_manipulate, anndata_import, unzip, anndata_inspect, tp_replace_in_column, anndata_ops, Paste1, Cut1 Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy Switzerland 0 674 784 14.466667 0
Single Cell Multi-sample batch correction with Harmony and SnapATAC2 T00515 gxy.io/GTN:T00515 https://training.galaxyproject.org//topics/single-cell/tutorials/scatac-batch-correction-snapatac2/tutorial.html Gene expression profiling, Essential dynamics, Dimensionality reduction 2025-02-28 2026-09-23 3 True False False True anndata_manipulate, collection_element_identifiers, __FILTER_FROM_FILE__, snapatac2_clustering, Show beginning1, snapatac2_plotting, anndata_inspect, fasta_compute_length, __EXTRACT_DATASET__, snapatac2_preprocessing, snapatac2_peaks_and_motif Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada 0 935 1032 5.066667 0
Single Cell Clustering 3K PBMCs with Seurat T00516 gxy.io/GTN:T00516 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-seurat-pbmc3k/tutorial.html 2025-01-23 2026-09-23 6 True False True True seurat_preprocessing, seurat_reduce_dimension, seurat_clustering, seurat_data, Filter1, csv_to_tabular, seurat_create, seurat_plot, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium 0 3104 3721 4.900000 0
Single Cell Plates, Batches, and Barcodes S00085 gxy.io/GTN:S00085 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-plates-batches-barcodes/slides.html 2019-02-16 2025-02-13 4 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050225 2.000000 0
Single Cell Inferring single cell trajectories with Scanpy (Python) T00244 gxy.io/GTN:T00244 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_JUPYTER-trajectories/tutorial.html 2021-04-07 2025-03-11 20 True False True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 5452 6324 3.916667 0
Single Cell Batch Correction and Integration with Seurat or Scanpy T00583 gxy.io/GTN:T00583 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna_batch_correction/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation 2026-07-09 2026-09-23 2 True False False True Count1, scanpy_normalize, scanpy_inspect, seurat_preprocessing, seurat_reduce_dimension, scanpy_remove_confounders, seurat_clustering, anndata_inspect, scanpy_plot, seurat_integrate, seurat_plot, seurat_data, scanpy_cluster_reduce_dimension, scanpy_filter Galaxy Europe, Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy Main (US) 0 290 307 3.500000 0
Single Cell Matrix Exchange Format to ESet | Creating a single-cell RNA-seq reference dataset for deconvolution T00241 gxy.io/GTN:T00241 https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-2-preparescref/tutorial.html Annotation 2023-01-20 2026-06-25 9 True False False True scanpy_read_10x, regex1, tp_sed_tool, music_construct_eset, join1, sort1, tp_easyjoin_tool, anndata_inspect, add_line_to_file, datamash_transpose, tp_awk_tool, tp_cut_tool, music_manipulate_eset, Cut1, annotatemyids, table_compute, retrieve_scxa Galaxy Canada 0 921 1431 7.566667 0
Single Cell Inferring single cell trajectories with Scanpy T00379 gxy.io/GTN:T00379 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_trajectories/tutorial.html 2023-12-08 2026-09-23 14 True False False True anndata_manipulate, scanpy_plot_trajectory, scanpy_run_dpt, scanpy_compute_graph, scanpy_run_diffmap, scanpy_run_fdg, scanpy_plot_embed, scanpy_find_cluster, scanpy_run_paga Galaxy Main (US), Galaxy Australia, Galaxy Belgium 0 1704 2089 7.500000 0
Single Cell Single-cell Formats and Resources S00123 gxy.io/GTN:S00123 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-data-formats/slides.html 2024-07-26 2025-02-13 4 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2385393 4394996 1.550000 0
Single Cell Inferring single cell trajectories with Monocle3 (R) T00336 gxy.io/GTN:T00336 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-rstudio/tutorial.html 2023-04-12 2025-03-11 13 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 7931 8918 1.633333 0
Single Cell Bulk matrix to ESet | Creating the bulk RNA-seq dataset for deconvolution T00242 gxy.io/GTN:T00242 https://training.galaxyproject.org//topics/single-cell/tutorials/bulk-music-3-preparebulk/tutorial.html Annotation 2023-01-20 2026-06-25 9 True False False True regex1, column_remove_by_header, tp_sed_tool, music_construct_eset, sort1, tp_easyjoin_tool, tp_awk_tool, tp_cut_tool, music_manipulate_eset, annotatemyids, table_compute Galaxy Canada 0 956 1386 10.500000 0
Single Cell Inferring single cell trajectories with Monocle3 T00249 gxy.io/GTN:T00249 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case_monocle3-trajectories/tutorial.html 2022-09-30 2026-09-23 25 True False True True monocle3_plotCells, monocle3_reduceDim, join1, Filter1, datamash_transpose, monocle3_partition, monocle3_orderCells, monocle3_preprocess, anndata_inspect, tp_cut_tool, monocle3_topmarkers, monocle3_create, monocle3_diffExp, Cut1, monocle3_learnGraph, regexColumn1 Galaxy Europe, Galaxy Main (US), Galaxy Belgium 0 4625 5649 4.266667 0
Single Cell Trajectory analysis S00111 gxy.io/GTN:S00111 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-trajectories/slides.html 2022-09-30 2025-02-13 4 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 3463956 6963910 1.800000 0
Single Cell Automated Cell Annotation S00110 gxy.io/GTN:S00110 https://training.galaxyproject.org//topics/single-cell/tutorials/scrna-case-cell-annotation/slides.html 2023-09-04 2025-02-27 7 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2857281 5515902 1.700000 0
Single Cell Pseudobulk Analysis with Decoupler and EdgeR T00514 gxy.io/GTN:T00514 https://training.galaxyproject.org//topics/single-cell/tutorials/pseudobulk-analysis/tutorial.html Differential gene expression analysis, Expression profile clustering, Principal component visualisation, Differential gene expression profiling 2025-02-12 2026-09-28 10 True False True True column_remove_by_header, decoupler_pseudobulk, anndata_manipulate, anndata_inspect, tp_replace_in_column, tp_awk_tool, scanpy_filter, volcanoplot, __EXTRACT_DATASET__, tp_replace_in_line, edger Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium 0 2802 3155 2.716667 0
Single Cell Spatial transcriptomics analysis of a primary dermal melanoma section from Xenium T00592 gxy.io/GTN:T00592 https://training.galaxyproject.org//topics/single-cell/tutorials/spatial-melanoma-SPICA/tutorial.html Differential gene expression analysis, Expression profile clustering, Differential gene expression profiling, Principal component visualisation 2026-09-01 2026-09-23 2 True False False True scanpy_normalize, anndata_manipulate, scanpy_inspect, datamash_ops, Filter1, spatialdata_plot, anndata_inspect, scanpy_plot, spatialdata_io, spatialdata_operation, squidpy_graph, scanpy_filter, squidpy_plot, scanpy_cluster_reduce_dimension, liana_methods, celltypist Galaxy Europe 0 204 250 2.983333 0
Single Cell GO Enrichment Analysis on Single-Cell RNA-Seq Data T00456 gxy.io/GTN:T00456 https://training.galaxyproject.org//topics/single-cell/tutorials/GO-enrichment/tutorial.html Gene-set enrichment analysis 2024-09-17 2026-09-23 10 True True False True goenrichment, Cut1, tp_split_on_column, gprofiler_gost Galaxy Europe, Galaxy Main (US), Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 2314950 4224798 5.550000 0
Statistics and Machine Learning Machine learning: classification and regression T00263 gxy.io/GTN:T00263 https://training.galaxyproject.org//topics/statistics/tutorials/classification_regression/tutorial.html 2019-03-07 2026-09-23 14 True False False True plotly_ml_performance_plots, sklearn_ensemble, plotly_regression_performance_plots, sklearn_svm_classifier Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy Switzerland, Galaxy Canada 0 5983 10549 2.983333 0
Statistics and Machine Learning Clustering in Machine Learning T00264 gxy.io/GTN:T00264 https://training.galaxyproject.org//topics/statistics/tutorials/clustering_machinelearning/tutorial.html Visualisation 2020-05-08 2026-09-23 15 True False False True csv_to_tabular, ggplot2_point, sklearn_numeric_clustering Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy France, Galaxy Switzerland, Galaxy Canada 0 9003 14614 2.700000 0
Statistics and Machine Learning Image classification in Galaxy with fruit 360 dataset T00265 gxy.io/GTN:T00265 https://training.galaxyproject.org//topics/statistics/tutorials/fruit_360/tutorial.html 2021-12-01 2026-09-23 9 True True True True keras_model_builder, tp_cut_tool, keras_train_and_eval, model_prediction, keras_model_config, ml_visualization_ex, sklearn_to_categorical Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada 0 3938162 8421716 5.750000 0
Statistics and Machine Learning Deep Learning (Part 3) - Convolutional neural networks (CNN) T00257 gxy.io/GTN:T00257 https://training.galaxyproject.org//topics/statistics/tutorials/CNN/tutorial.html 2021-04-19 2026-09-23 21 True True True True keras_model_builder, keras_train_and_eval, model_prediction, keras_model_config, ml_visualization_ex, sklearn_to_categorical Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy France, Galaxy Switzerland 0 4286987 9519550 4.033333 0
Statistics and Machine Learning Gleam Multimodal Learner - Head and Neck cancer Recurrence Prediction with HANCOCK T00576 gxy.io/GTN:T00576 https://training.galaxyproject.org//topics/statistics/tutorials/multimodal_learner/tutorial.html 2026-03-25 2026-09-23 5 True True True True multimodal_learner Galaxy Main (US) Galaxy Europe, Galaxy Switzerland, Galaxy Belgium 0 839885 1411820 9.283333 0
Statistics and Machine Learning Deep Learning (Part 2) - Recurrent neural networks (RNN) T00259 gxy.io/GTN:T00259 https://training.galaxyproject.org//topics/statistics/tutorials/RNN/tutorial.html 2021-02-23 2026-09-23 16 True True True True keras_model_builder, keras_train_and_eval, model_prediction, keras_model_config, ml_visualization_ex Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy France, Galaxy Norway 0 4358675 9800360 5.266667 0
Statistics and Machine Learning Identifing Survival Markers of Brain tumor with Flexynesis T00555 gxy.io/GTN:T00555 https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_survival/tutorial.html 2025-08-13 2026-09-23 3 True False False True datamash_ops, Add_a_column1, tp_replace_in_column, flexynesis, flexynesis_plot, __EXTRACT_DATASET__ Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada 0 264 326 17.000000 0
Statistics and Machine Learning Unsupervised Analysis of Bone Marrow Cells with Flexynesis T00556 gxy.io/GTN:T00556 https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_unsupervised/tutorial.html 2025-08-10 2026-09-23 3 True False False True flexynesis, flexynesis_utils, flexynesis_plot, __EXTRACT_DATASET__ Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada 0 150 163 28.533333 0
Statistics and Machine Learning Regression in Machine Learning T00271 gxy.io/GTN:T00271 https://training.galaxyproject.org//topics/statistics/tutorials/regression_machinelearning/tutorial.html 2020-01-25 2026-09-23 21 True True True True sklearn_generalized_linear, plotly_regression_performance_plots, sklearn_build_pipeline, sklearn_ensemble, Remove beginning1, sklearn_searchcv Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 4430872 10054798 7.683333 0
Statistics and Machine Learning GLEAM Image Learner - Validating Skin Lesion Classification on HAM10000 T00570 gxy.io/GTN:T00570 https://training.galaxyproject.org//topics/statistics/tutorials/image_learner/tutorial.html 2026-01-28 2026-09-23 5 True True True True image_learner Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium 0 1138127 1833786 16.200000 0
Statistics and Machine Learning Basics of machine learning T00270 gxy.io/GTN:T00270 https://training.galaxyproject.org//topics/statistics/tutorials/machinelearning/tutorial.html 2018-11-05 2026-09-23 17 True True True True sklearn_svm_classifier Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 4430574 10054726 12.800000 0
Statistics and Machine Learning PAPAA PI3K_OG: PanCancer Aberrant Pathway Activity Analysis T00260 gxy.io/GTN:T00260 https://training.galaxyproject.org//topics/statistics/tutorials/aberrant_pi3k_pathway_analysis/tutorial.html 2021-05-06 2026-09-23 8 True False False True pancancer_external_sample_status_prediction, pancancer_map_mutation_class, pancancer_apply_weights, pancancer_pathway_count_heatmaps, pancancer_compare_within_models, pancancer_targene_pharmacology, pancancer_targene_cell_line_predictions, pancancer_targene_summary_figures, pancancer_classifier, pancancer_visualize_decisions, pancancer_within_disease_analysis, pancancer_alternative_genes_pathwaymapper Galaxy Belgium 0 991 1441 10.266667 0
Statistics and Machine Learning Introduction to deep learning T00268 gxy.io/GTN:T00268 https://training.galaxyproject.org//topics/statistics/tutorials/intro_deep_learning/tutorial.html 2020-03-26 2026-09-23 10 True False False True keras_model_builder, keras_train_and_eval, model_prediction, keras_model_config, ml_visualization_ex Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Belgium, Galaxy Norway Galaxy France, Galaxy Switzerland, Galaxy Canada 0 2746 3452 7.200000 0
Statistics and Machine Learning A Docker-based interactive Jupyterlab powered by GPU for artificial intelligence in Galaxy T00266 gxy.io/GTN:T00266 https://training.galaxyproject.org//topics/statistics/tutorials/gpu_jupyter_lab/tutorial.html 2022-04-06 2026-09-23 10 True False False True Filter1, Cut1, interactive_tool_ml_jupyter_notebook Galaxy Europe 0 1448 1780 8.183333 0
Statistics and Machine Learning Classification in Machine Learning T00262 gxy.io/GTN:T00262 https://training.galaxyproject.org//topics/statistics/tutorials/classification_machinelearning/tutorial.html 2020-04-30 2026-09-23 19 True True True True sklearn_svm_classifier, sklearn_generalized_linear, plotly_ml_performance_plots, sklearn_nn_classifier, sklearn_build_pipeline, sklearn_ensemble, Remove beginning1, sklearn_searchcv Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Belgium Galaxy Switzerland, Galaxy Norway 0 4430433 10054792 11.100000 0
Statistics and Machine Learning Prepare Data from CbioPortal for Flexynesis Integration T00553 gxy.io/GTN:T00553 https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_cbio_import/tutorial.html 2025-08-10 2026-09-23 3 True False False True flexynesis_cbioportal_import, tp_cut_tool, tp_sort_header_tool, __EXTRACT_DATASET__, flexynesis_utils, table_compute Galaxy Europe Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium 0 198 224 6.716667 0
Statistics and Machine Learning Interval-Wise Testing for omics data T00269 gxy.io/GTN:T00269 https://training.galaxyproject.org//topics/statistics/tutorials/iwtomics/tutorial.html Comparison, Differentially-methylated region identification, Differential gene expression analysis, Genome annotation, Peak calling 2018-06-14 2026-09-23 18 True False False True iwtomics_testandplot, iwtomics_loadandplot, iwtomics_plotwithscale Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 473 596 14.416667 0
Statistics and Machine Learning GTEx Tissue Modeling with Galaxy Image Learner T00588 gxy.io/GTN:T00588 https://training.galaxyproject.org//topics/statistics/tutorials/GTEx_Tissue_modeling/tutorial.html 2026-07-24 2026-07-24 1 True True False True image_learner Galaxy Europe, Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium 0 429936 709722 17.583333 0
Statistics and Machine Learning Age prediction using machine learning T00261 gxy.io/GTN:T00261 https://training.galaxyproject.org//topics/statistics/tutorials/age-prediction-with-ml/tutorial.html 2019-01-25 2026-09-23 13 True False False True plotly_regression_performance_plots, sklearn_build_pipeline, sklearn_ensemble, plotly_parallel_coordinates_plot, sklearn_searchcv Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 13701 21897 2.183333 0
Statistics and Machine Learning Text-mining with the SimText toolset T00272 gxy.io/GTN:T00272 https://training.galaxyproject.org//topics/statistics/tutorials/text-mining_simtext/tutorial.html 2021-04-05 2026-09-23 9 True False False True pubmed_by_queries, interactive_tool_simtext_app, pmids_to_pubtator_matrix Galaxy Europe 0 619 816 14.416667 0
Statistics and Machine Learning Deep Learning (Part 1) - Feedforward neural networks (FNN) T00258 gxy.io/GTN:T00258 https://training.galaxyproject.org//topics/statistics/tutorials/FNN/tutorial.html 2021-04-28 2026-09-23 14 True True True True keras_model_builder, plotly_regression_performance_plots, keras_train_and_eval, model_prediction, keras_model_config Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy France, Galaxy Norway 0 4291939 9508804 3.383333 0
Statistics and Machine Learning Train and Test a Deep learning image classifier with Galaxy-Ludwig T00467 gxy.io/GTN:T00467 https://training.galaxyproject.org//topics/statistics/tutorials/galaxy-ludwig/tutorial.html 2024-10-28 2024-12-11 2 True False False True ludwig_experiment 0 371 436 12.566667 0
Statistics and Machine Learning Modeling Breast Cancer Subtypes with Flexynesis T00554 gxy.io/GTN:T00554 https://training.galaxyproject.org//topics/statistics/tutorials/flexynesis_classification/tutorial.html 2025-08-13 2026-09-23 8 True False True True datamash_transpose, join1, Show beginning1, tp_easyjoin_tool, tabpfn, tp_cut_tool, flexynesis, tp_sort_header_tool, flexynesis_plot, __EXTRACT_DATASET__, table_compute Galaxy Europe, Galaxy Belgium Galaxy France, Galaxy Switzerland, Galaxy Canada 0 409 533 21.050000 0
Statistics and Machine Learning Galaxy Tabular Learner - Building a Model using Chowell clinical data T00525 gxy.io/GTN:T00525 https://training.galaxyproject.org//topics/statistics/tutorials/loris_model/tutorial.html 2024-12-13 2026-09-23 5 True True True True tabular_learner, PyCaret_Model_Comparison 0 2169656 3854836 15.383333 0
Statistics and Machine Learning Comparing ligand-binding site predictions across different protein structure modalities using SIMORGH T00594 gxy.io/GTN:T00594 https://training.galaxyproject.org//topics/statistics/tutorials/simorgh/tutorial.html Protein property calculation, Database search, Protein structure prediction, Fold recognition, Protein structure analysis 2026-09-24 2026-09-24 1 True False False True pdbfixer, tp_text_file_with_recurring_lines, tp_awk_tool, get_pdb, __EXTRACT_DATASET__, simorgh, tp_replace_in_line, compose_text_param, colabfold_alphafold, colabfold_msa Galaxy Europe, Galaxy Belgium 0 46 55 4.250000 0
Statistics and Machine Learning Fine tune large protein model (ProtTrans) using HuggingFace T00442 gxy.io/GTN:T00442 https://training.galaxyproject.org//topics/statistics/tutorials/fine_tuning_protTrans/tutorial.html 2024-06-17 2026-09-23 5 True True True False interactive_tool_ml_jupyter_notebook Galaxy Europe 0 2443277 4537606 6.266667 0
Statistics and Machine Learning Supervised Learning with Hyperdimensional Computing T00337 gxy.io/GTN:T00337 https://training.galaxyproject.org//topics/statistics/tutorials/hyperdimensional_computing/tutorial.html 2023-04-28 2026-09-23 3 True False False False chopin2 Galaxy Main (US) Galaxy Europe, Galaxy Switzerland, Galaxy Canada 0 619 732 8.633333 0
Statistics and Machine Learning Introduction to Machine Learning using R T00267 gxy.io/GTN:T00267 https://training.galaxyproject.org//topics/statistics/tutorials/intro-to-ml-with-r/tutorial.html 2021-05-21 2024-10-15 15 True False True False interactive_tool_rstudio Galaxy Europe 0 5084 7799 4.950000 0
Synthetic Biology Evaluating and ranking a set of pathways based on multiple metrics T00274 gxy.io/GTN:T00274 https://training.galaxyproject.org//topics/synthetic-biology/tutorials/pathway_analysis/tutorial.html 2022-09-26 2026-09-23 8 True False True True rpthermo, rpfba, rpscore, rpranker Galaxy Belgium 0 808 1127 9.783333 0
Synthetic Biology Designing plasmids encoding predicted pathways by using the BASIC assembly method T00273 gxy.io/GTN:T00273 https://training.galaxyproject.org//topics/synthetic-biology/tutorials/basic_assembly_analysis/tutorial.html 2022-05-12 2026-09-23 9 True False True True dnabot, selenzy-wrapper, rpbasicdesign Galaxy Belgium Galaxy France 0 1263 1861 12.866667 0
Synthetic Biology Generating theoretical possible pathways for the production of Lycopene in E.Coli using Retrosynthesis tools T00275 gxy.io/GTN:T00275 https://training.galaxyproject.org//topics/synthetic-biology/tutorials/retrosynthesis_analysis/tutorial.html 2022-06-23 2024-06-14 8 True False True True get_sbml_model, rpcompletion, rp2paths, rrparser, retropath2, rpextractsink Galaxy Belgium Galaxy France 0 814 1112 13.500000 0
Teaching and Hosting Galaxy Training Workshop Kickoff S00093 gxy.io/GTN:S00093 https://training.galaxyproject.org//topics/teaching/tutorials/workshop-intro/slides.html 2019-06-04 2024-02-20 5 False True False False 0 4427230 10050230 2.000000 0
Teaching and Hosting Galaxy Training Overview of the Galaxy Training Material for Instructors S00092 gxy.io/GTN:S00092 https://training.galaxyproject.org//topics/teaching/tutorials/gtn-for-instructors/slides.html 2022-09-23 2024-08-08 3 False True True False 0 3474506 6990946 1.800000 0
Teaching and Hosting Galaxy Training Set up a Galaxy for Training T00285 gxy.io/GTN:T00285 https://training.galaxyproject.org//topics/teaching/tutorials/setup-galaxy-for-training/tutorial.html 2018-06-04 2023-11-09 5 True False False False 0 502 553 15.283333 0
Teaching and Hosting Galaxy Training Course Builder T00372 gxy.io/GTN:T00372 https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-coursebuilder/tutorial.html 2023-11-02 2023-11-02 1 True False False False 0 240 268 16.266667 0
Teaching and Hosting Galaxy Training Running a workshop as an instructor T00284 gxy.io/GTN:T00284 https://training.galaxyproject.org//topics/teaching/tutorials/running-workshop/tutorial.html 2018-11-15 2025-12-18 7 True False False False 0 307 441 21.483333 0
Teaching and Hosting Galaxy Training Teaching experiences T00277 gxy.io/GTN:T00277 https://training.galaxyproject.org//topics/teaching/tutorials/experiences/tutorial.html 2022-09-23 2022-09-23 1 True False False False 0 446 684 17.866667 0
Teaching and Hosting Galaxy Training Asynchronous training T00371 gxy.io/GTN:T00371 https://training.galaxyproject.org//topics/teaching/tutorials/gallantries-async/tutorial.html 2023-11-02 2023-11-02 1 True False False False 0 64 64 76.783333 0
Teaching and Hosting Galaxy Training Teaching online T00287 gxy.io/GTN:T00287 https://training.galaxyproject.org//topics/teaching/tutorials/teaching-online/tutorial.html 2022-09-23 2023-10-23 4 True False False False 0 76 76 19.333333 0
Teaching and Hosting Galaxy Training Galaxy Admin Training T00278 gxy.io/GTN:T00278 https://training.galaxyproject.org//topics/teaching/tutorials/galaxy-admin-training/tutorial.html 2020-11-04 2024-09-17 5 True False False False 0 252 274 20.983333 0
Teaching and Hosting Galaxy Training Hybrid training T00279 gxy.io/GTN:T00279 https://training.galaxyproject.org//topics/teaching/tutorials/hybrid-training/tutorial.html 2022-09-23 2024-06-25 7 True False False False 0 73 75 15.900000 0
Teaching and Hosting Galaxy Training Training Infrastructure as a Service T00286 gxy.io/GTN:T00286 https://training.galaxyproject.org//topics/teaching/tutorials/setup-tiaas-for-training/tutorial.html 2018-11-15 2023-12-20 4 True False False False 0 394 597 20.700000 0
Teaching and Hosting Galaxy Training Organizing a workshop T00283 gxy.io/GTN:T00283 https://training.galaxyproject.org//topics/teaching/tutorials/organize-workshop/tutorial.html 2018-11-15 2023-11-09 4 True False False False 0 407 437 20.466667 0
Teaching and Hosting Galaxy Training Live Coding is a Skill T00281 gxy.io/GTN:T00281 https://training.galaxyproject.org//topics/teaching/tutorials/live-coding/tutorial.html 2022-09-23 2023-11-09 6 True False False False 0 167 171 19.316667 0
Transcriptomics Introduction to Transcriptomics S00094 gxy.io/GTN:S00094 https://training.galaxyproject.org//topics/transcriptomics/tutorials/introduction/slides.html 2016-10-05 2025-04-08 3 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050232 2.000000 0
Transcriptomics Reference-based RNA-Seq data analysis T00295 gxy.io/GTN:T00295 https://training.galaxyproject.org//topics/transcriptomics/tutorials/ref-based/tutorial.html Read pre-processing, Sequence alignment, Pathway or network visualisation, Pathway visualisation, Pathway or network analysis, Exonic splicing enhancer prediction, Primer removal, Validation, Read mapping, Read summarisation, Genome visualisation, Structure visualisation, Visualisation, RNA-Seq quantification, Differential gene expression analysis, RNA-Seq analysis, Formatting, Data handling, Sequence trimming, Sequencing quality control, Gene functional annotation, Enrichment analysis 2016-10-05 2026-09-23 111 True False True True multiqc, rseqc_infer_experiment, __MERGE_COLLECTION__, join1, Add_a_column1, dexseq_count, cutadapt, tp_grep_tool, featurecounts, __EXTRACT_DATASET__, Remove beginning1, deg_annotate, goseq, pathview, collection_element_identifiers, __FILTER_FROM_FILE__, rseqc_geneBody_coverage, __FLATTEN__, length_and_gc_content, Grouping1, __TAG_FROM_FILE__, Cut1, tp_cat, dexseq, table_compute, falco, rna_star, deseq2, gtftobed12, picard_MarkDuplicates, tp_replace_in_line, samtools_view, rseqc_read_distribution, ggplot2_heatmap2, pygenomeTracks, Filter1, cat1, tp_sort_header_tool, jbrowse2, ChangeCase, samtools_idxstats Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Australia, Galaxy Switzerland, Galaxy Canada 0 219206 394056 4.366667 0
Transcriptomics Pathway analysis with the MINERVA Platform T00437 gxy.io/GTN:T00437 https://training.galaxyproject.org//topics/transcriptomics/tutorials/minerva-pathways/tutorial.html Annotation, Data handling, Sequence composition calculation, RNA-Seq quantification, Read pre-processing, Sequence alignment, Statistical calculation, RNA-Seq analysis, Validation, Sequence trimming, Primer removal, Sequencing quality control, Read summarisation, Gene functional annotation 2024-03-28 2026-09-23 4 True False False True multiqc, join1, fastqc, Add_a_column1, limma_voom, featurecounts, __EXTRACT_DATASET__, goseq, rseqc_geneBody_coverage, collection_column_join, tp_sorted_uniq, Cut1, annotatemyids, fasterq_dump, tp_replace_in_line, rseqc_read_distribution, hisat2, tp_sort_header_tool, Grep1, cutadapt Galaxy Europe, Galaxy Australia, Galaxy Belgium Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 924 1063 14.000000 0
Transcriptomics De novo transcriptome reconstruction with RNA-Seq T00289 gxy.io/GTN:T00289 https://training.galaxyproject.org//topics/transcriptomics/tutorials/de-novo/tutorial.html Sequence annotation, Sequence composition calculation, RNA-Seq quantification, Sequence alignment, Differential gene expression analysis, RNA-Seq analysis, Statistical calculation, Sequencing quality control, Transcriptome assembly, Read summarisation 2017-02-19 2026-09-23 37 True False True True deseq2, deeptools_bam_coverage, trimmomatic, fastqc, Filter1, stringtie_merge, stringtie, gffcompare, hisat2, featurecounts Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Europe, Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 18273 30690 6.733333 0
Transcriptomics CLIP-Seq data analysis from pre-processing to motif detection T00288 gxy.io/GTN:T00288 https://training.galaxyproject.org//topics/transcriptomics/tutorials/clipseq/tutorial.html Mapping, Sequence composition calculation, Statistical calculation, Primer removal, Sequence trimming, Sequencing quality control, Read pre-processing, Sequence alignment 2018-08-17 2026-09-23 24 True False False True __MERGE_COLLECTION__, fastqc, bctools_extract_alignment_ends, rcas, umi_tools_extract, wig_to_bigWig, __SORTLIST__, bedtools_genomecoveragebed_bedgraph, sort1, tp_awk_tool, peakachu, deeptools_multi_bam_summary, deeptools_plot_correlation, umi_tools_dedup, Extract genomic DNA 1, meme_chip, deeptools_plot_fingerprint, bedtools_slopbed, rna_star, cutadapt 0 9201 17364 3.600000 0
Transcriptomics GO Enrichment Analysis T00291 gxy.io/GTN:T00291 https://training.galaxyproject.org//topics/transcriptomics/tutorials/goenrichment/tutorial.html Gene-set enrichment analysis 2019-01-23 2026-09-23 13 True False False True Filter1, goslimmer, goenrichment Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 24549 39145 3.433333 0
Transcriptomics 2: RNA-seq counts to genes T00298 gxy.io/GTN:T00298 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-genes/tutorial.html Annotation, RNA-Seq analysis 2018-12-31 2026-09-23 22 True False False True mergeCols1, tp_cut_tool, limma_voom, tp_replace_in_line, annotatemyids Galaxy Europe, Galaxy Switzerland, Galaxy Belgium Galaxy Australia, Galaxy France, Galaxy Canada 0 52356 84201 5.683333 0
Transcriptomics Differential abundance testing of small RNAs T00307 gxy.io/GTN:T00307 https://training.galaxyproject.org//topics/transcriptomics/tutorials/srna/tutorial.html Sequence composition calculation, RNA-Seq quantification, Read pre-processing, Sequence alignment, Gene expression analysis, Differential gene expression analysis, RNA-Seq analysis, Statistical calculation, Primer removal, Sequence trimming, Sequencing quality control 2017-06-29 2026-09-23 27 True False False True bedtools_bamtofastq, deseq2, fastq_manipulation, fastqc, Filter1, hisat2, trim_galore, salmon, samtool_filter2 Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway 0 7616 12949 5.566667 0
Transcriptomics Visualization of RNA-Seq results with heatmap2 T00303 gxy.io/GTN:T00303 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-heatmap2/tutorial.html 2018-12-31 2026-09-23 16 True False False True ggplot2_heatmap2, datamash_transpose, Show beginning1, Filter1, join1, cat1, tp_sort_header_tool, Cut1, Show tail1 Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 81253 131887 2.666667 0
Transcriptomics RNA-RNA interactome data analysis T00296 gxy.io/GTN:T00296 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-interactome/tutorial.html Sequence composition calculation, Statistical calculation, Primer removal, Sequence trimming, Sequencing quality control, Read pre-processing 2020-03-23 2026-09-23 13 True False False True query_tabular, fastqc, chira_map, chira_extract, chira_merge, chira_collapse, chira_quantify, cutadapt Galaxy Main (US), Galaxy Belgium, Galaxy Norway Galaxy Europe, Galaxy Australia, Galaxy Canada 0 1705 2471 12.250000 0
Transcriptomics RNA-Seq data analysis, clustering and visualisation tutorial T00547 gxy.io/GTN:T00547 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-clustering-viz/tutorial.html Differential gene expression analysis, RNA-Seq analysis, Gene functional annotation 2025-05-28 2026-06-08 9 True False False True ggplot2_heatmap2, goseq, deseq2, Multivariate, Show beginning1, Filter1, tp_easyjoin_tool, Add_a_column1, cat1, length_and_gc_content, Grouping1, tp_sort_header_tool, volcanoplot, deg_annotate, Cut1, table_compute Galaxy Europe, Galaxy France, Galaxy Belgium Galaxy Main (US), Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 3547 4171 3.750000 0
Transcriptomics Network analysis with Heinz T00293 gxy.io/GTN:T00293 https://training.galaxyproject.org//topics/transcriptomics/tutorials/network-analysis-with-heinz/tutorial.html Pathway or network analysis, Differential gene expression analysis, RNA-Seq analysis 2018-10-11 2026-09-23 17 True True False True deseq2, heinz_scoring, heinz, heinz_visualization, Cut1, heinz_bum Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway 0 4429511 10053671 12.200000 0
Transcriptomics Visualization of RNA-Seq results with Volcano Plot T00304 gxy.io/GTN:T00304 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot/tutorial.html 2018-12-31 2026-09-23 17 True False True True volcanoplot Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Canada, Galaxy Norway 0 164389 264012 2.100000 0
Transcriptomics De novo transcriptome assembly, annotation, and differential expression analysis T00290 gxy.io/GTN:T00290 https://training.galaxyproject.org//topics/transcriptomics/tutorials/full-de-novo/tutorial.html Coding region prediction, Sequence composition calculation, De-novo assembly, de Novo sequencing, Statistical calculation, Validation, Sequencing quality control, Transcriptome assembly, Gene functional annotation 2020-02-13 2023-11-09 8 True False False True multiqc, trinity_define_clusters_by_cutting_tree, trinity_analyze_diff_expr, trimmomatic, fastqc, trinity_filter_low_expr_transcripts, trinity, trinity_run_de_analysis, transdecoder, trinity_align_and_estimate_abundance, trinity_abundance_estimates_to_matrix, trinity_contig_exn50_statistic, trinity_samples_qccheck, describe_samples, trinotate Galaxy Europe Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 16101 28273 4.133333 0
Transcriptomics Small Non-coding RNA Clustering using BlockClust T00306 gxy.io/GTN:T00306 https://training.galaxyproject.org//topics/transcriptomics/tutorials/small_ncrna_clustering/tutorial.html 2018-12-14 2026-09-23 9 True False False True blockbuster, tp_sort_header_tool, samtools_sort, blockclust Galaxy Europe, Galaxy Main (US), Galaxy Belgium Galaxy Australia, Galaxy Canada, Galaxy Norway 0 1197 1586 14.166667 0
Transcriptomics Genome-wide alternative splicing analysis T00345 gxy.io/GTN:T00345 https://training.galaxyproject.org//topics/transcriptomics/tutorials/differential-isoform-expression/tutorial.html Sequence analysis, Sequence annotation, Visualisation, Sequence composition calculation, De-novo assembly, Sequence comparison, Sequence alignment, Protein sequence analysis, Sequence contamination filtering, Statistical calculation, RNA-Seq analysis, Data handling, Validation, Formatting, Sequencing quality control, Transcriptome assembly, Sequence assembly validation 2023-05-17 2026-09-23 14 True True False True multiqc, rseqc_infer_experiment, fastqc, addValue, Add_a_column1, rseqc_inner_distance, tp_grep_tool, Remove beginning1, collection_element_identifiers, __FILTER_FROM_FILE__, rseqc_geneBody_coverage, stringtie, __FLATTEN__, pfamscan, rseqc_junction_annotation, rseqc_junction_saturation, gffread, Cut1, tp_cat, regex1, stringtie_merge, sort1, gtftobed12, gffcompare, tp_awk_tool, rna_quast, rseqc_read_distribution, gene2exon1, tp_uniq_tool, fastp, Filter1, cpat, cat1, isoformswitchanalyzer, rna_star, pygenomeTracks Galaxy France, Galaxy Switzerland, Galaxy Canada 0 3064766 5959003 7.183333 0
Transcriptomics 3: RNA-seq genes to pathways T00300 gxy.io/GTN:T00300 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-genes-to-pathways/tutorial.html Gene-set enrichment analysis, Gene functional annotation, Gene set testing 2018-12-31 2026-09-23 14 True False False True goseq, join1, Add_a_column1, fgsea, tp_cut_tool, tp_sort_header_tool, Cut1, egsea Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium, Galaxy Norway Galaxy Canada 0 29920 46439 5.800000 0
Transcriptomics 1: RNA-Seq reads to counts T00301 gxy.io/GTN:T00301 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-reads-to-counts/tutorial.html Sequence composition calculation, RNA-Seq quantification, Sequence trimming, Read pre-processing, Sequence alignment, Statistical calculation, Validation, Data handling, Formatting, Primer removal, Sequencing quality control, Read summarisation 2018-09-23 2026-09-23 35 True False False True multiqc, rseqc_infer_experiment, fastqc, rseqc_geneBody_coverage, hisat2, collection_column_join, featurecounts, picard_MarkDuplicates, rseqc_read_distribution, cutadapt, samtools_idxstats Galaxy Europe Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium, Galaxy Norway 0 86333 153118 5.283333 0
Transcriptomics RNA-Seq analysis with AskOmics Interactive Tool T00297 gxy.io/GTN:T00297 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-analysis-with-askomics-it/tutorial.html 2020-07-09 2023-11-09 13 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4428427 10051717 18.216667 0
Transcriptomics Visualization of RNA-Seq results with CummeRbund T00302 gxy.io/GTN:T00302 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-cummerbund/tutorial.html 2017-10-16 2026-09-23 17 True True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4430017 10054334 12.033333 0
Transcriptomics Visualization of RNA-Seq results with Volcano Plot in R T00305 gxy.io/GTN:T00305 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-viz-with-volcanoplot-r/tutorial.html 2021-06-14 2026-09-23 9 True False True False interactive_tool_rstudio, volcanoplot Galaxy Europe 0 31847 43267 3.733333 0
Transcriptomics Reference-based RNAseq data analysis (long) T00294 gxy.io/GTN:T00294 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rb-rnaseq/tutorial.html 2017-02-22 2023-02-17 12 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 23181 35824 4.233333 0
Transcriptomics RNA-seq Alignment with STAR T00346 gxy.io/GTN:T00346 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-bash-star-align/tutorial.html 2023-05-15 2026-09-23 7 True False False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 12789 15552 3.316667 0
Transcriptomics RNA Seq Counts to Viz in R T00299 gxy.io/GTN:T00299 https://training.galaxyproject.org//topics/transcriptomics/tutorials/rna-seq-counts-to-viz-in-r/tutorial.html 2019-10-08 2026-09-23 22 True False True False interactive_tool_rstudio Galaxy Europe 0 4666 5914 10.900000 0
Variant Analysis Introduction to Variant analysis S00099 gxy.io/GTN:S00099 https://training.galaxyproject.org//topics/variant-analysis/tutorials/introduction/slides.html 2016-08-19 2023-03-05 2 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050236 2.000000 0
Variant Analysis Querying the University of Bradford GDC Beacon Database for Copy Number Variants (CNVs) T00448 gxy.io/GTN:T00448 https://training.galaxyproject.org//topics/variant-analysis/tutorials/beacon_cnv_query/tutorial.html Database search, Service discovery, Genetic variation analysis 2024-08-06 2026-09-23 4 True False False False beacon2_cnv Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada 0 330 370 9.400000 0
Variant Analysis Working with Beacon V2: A Comprehensive Guide to Creating, Uploading, and Searching for Variants with Beacons T00449 gxy.io/GTN:T00449 https://training.galaxyproject.org//topics/variant-analysis/tutorials/beaconise_1000hg/tutorial.html Database search, Service discovery, Genetic variation analysis 2024-08-06 2026-09-23 5 True False False False beacon2_import, beacon2_cnv, cnv_phenopacket, cnv_vcf2json Galaxy Europe, Galaxy Canada 0 555 603 4.883333 0
Variant Analysis Calling very rare variants T00310 gxy.io/GTN:T00310 https://training.galaxyproject.org//topics/variant-analysis/tutorials/dunovo/tutorial.html Genome indexing, Generation, Variant calling, Sequence composition calculation, Statistical calculation, Sequencing quality control, Read mapping, Sequence alignment 2017-02-22 2026-09-23 22 True False False True make_families, fastqc, Filter1, allele_counts_1, dunovo, bamleftalign, correct_barcodes, naive_variant_caller, align_families, bwa_mem, sequence_content_trimmer Galaxy Main (US), Galaxy Switzerland, Galaxy Belgium 0 2716 3890 5.483333 0
Variant Analysis Deciphering Virus Populations - Single Nucleotide Variants (SNVs) and Specificities in Baculovirus Isolates T00528 gxy.io/GTN:T00528 https://training.galaxyproject.org//topics/variant-analysis/tutorials/baculovirus-isolate-variation/tutorial.html Generation, Visualisation, Read pre-processing, Sequence alignment, Genome indexing, Primer removal, Data handling, Sequence trimming, Read mapping 2025-02-24 2025-02-24 1 True False False True ggplot2_point, bcftools_call, Filter1, tp_replace_in_column, tp_awk_tool, ncbi_acc_download, trim_galore, vcf2tsv, collapse_dataset, tp_replace_in_line, bwa_mem, fastq_dump, bcftools_mpileup Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Switzerland 0 652 778 5.533333 0
Variant Analysis Mapping and molecular identification of phenotype-causing mutations T00312 gxy.io/GTN:T00312 https://training.galaxyproject.org//topics/variant-analysis/tutorials/mapping-by-sequencing/tutorial.html 2018-03-07 2026-09-23 17 True False False True mimodd_varreport, mimodd_map, tp_find_and_replace, snpEff_download, snpEff, mimodd_varcall, mimodd_vcf_filter, mimodd_varextract Galaxy Europe, Galaxy Belgium Galaxy Main (US), Galaxy Australia, Galaxy Canada, Galaxy Norway 0 4997 7105 10.600000 0
Variant Analysis Calling variants in diploid systems T00309 gxy.io/GTN:T00309 https://training.galaxyproject.org//topics/variant-analysis/tutorials/dip/tutorial.html Sequence analysis, Variant calling, Genetic variation analysis, Statistical calculation 2017-02-20 2026-09-23 18 True False False True gemini_load, vcfallelicprimitives, snpEff, gemini_query, gemini_db_info, freebayes Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Australia, Galaxy Canada, Galaxy Norway 0 17757 29733 8.766667 0
Variant Analysis Somatic Variant Discovery from WES Data Using Control-FREEC T00317 gxy.io/GTN:T00317 https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variant-discovery/tutorial.html Generation, Visualisation, Variant calling, Sequence composition calculation, Copy number estimation, Sequence alignment, Genome indexing, Sequence visualisation, Sequencing quality control, Statistical calculation, Genome alignment, Validation, Read mapping 2022-10-05 2026-09-23 15 True False False True falco, __BUILD_LIST__, control_freec, multiqc, trimmomatic, fastqc, tp_text_file_with_recurring_lines, samtools_rmdup, bamleftalign, samtools_calmd, __EXTRACT_DATASET__, Grep1, tp_replace_in_line, bwa_mem, circos, __RELABEL_FROM_FILE__, samtools_view Galaxy Belgium Galaxy Europe, Galaxy Australia, Galaxy France, Galaxy Canada 0 2270 2841 8.000000 0
Variant Analysis Exome sequencing data analysis for diagnosing a genetic disease T00311 gxy.io/GTN:T00311 https://training.galaxyproject.org//topics/variant-analysis/tutorials/exome-seq/tutorial.html Sequence analysis, Generation, Visualisation, Variant calling, Sequence composition calculation, Sequence alignment, Genome indexing, Sequencing quality control, Statistical calculation, Validation, Read mapping, Genetic variation analysis 2016-08-19 2026-09-23 31 True False True True falco, multiqc, gemini_inheritance, trimmomatic, fastqc, bcftools_norm, gemini_load, snpEff_download, snpEff, samtools_rmdup, bwa_mem, samtools_view, freebayes Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Belgium Galaxy Australia, Galaxy Canada 0 42071 73559 5.166667 0
Variant Analysis Calling variants in non-diploid systems T00314 gxy.io/GTN:T00314 https://training.galaxyproject.org//topics/variant-analysis/tutorials/non-dip/tutorial.html Genomics, Sequence assembly, DNA polymorphism, Microbiology, Sequence analysis, Genetic variation Generation, Variant calling, Sequence composition calculation, Sequence alignment, Genome indexing, Sequence alignment analysis, Statistical calculation, Formatting, Data handling, Sequencing quality control, Read mapping 2017-02-16 2026-09-23 24 True False False True picard_MergeSamFiles, fastqc, bamleftalign, vcf2tsv, vcffilter2, bamFilter, picard_MarkDuplicates, bwa_mem, Cut1, freebayes Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Belgium Galaxy Australia, Galaxy Switzerland, Galaxy Canada, Galaxy Norway 0 10625 17816 5.550000 0
Variant Analysis Identification of somatic and germline variants from tumor and normal sample pairs T00318 gxy.io/GTN:T00318 https://training.galaxyproject.org//topics/variant-analysis/tutorials/somatic-variants/tutorial.html Generation, Visualisation, Variant calling, Sequence composition calculation, Sequence alignment, Genome indexing, Sequence alignment analysis, Sequencing quality control, Statistical calculation, Data handling, Validation, Read mapping 2019-03-13 2026-09-23 17 True False False True falco, multiqc, varscan_somatic, trimmomatic, fastqc, tp_easyjoin_tool, gemini_load, bamleftalign, gemini_annotate, snpEff, bg_column_arrange_by_header, gemini_query, bamFilter, samtools_calmd, samtools_rmdup, bwa_mem Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Belgium Galaxy France, Galaxy Canada 0 16680 29042 5.800000 0
Variant Analysis Trio Analysis using Synthetic Datasets from RD-Connect GPAP T00320 gxy.io/GTN:T00320 https://training.galaxyproject.org//topics/variant-analysis/tutorials/trio-analysis/tutorial.html Sequence analysis, Genetic variation analysis 2022-05-19 2026-09-23 14 True False True True gemini_inheritance, CONVERTER_gz_to_uncompressed, pyega3, Filter1, gene_iobio_display_generation_iframe, bcftools_merge, CONVERTER_uncompressed_to_gz, bcftools_norm, gemini_load, snpEff, tp_grep_tool, regexColumn1 Galaxy Europe, Galaxy Switzerland, Galaxy Belgium Galaxy Australia, Galaxy Canada 0 2397 3979 9.700000 0
Variant Analysis Pangenome variant calling with DeepVariant T00595 gxy.io/GTN:T00595 https://training.galaxyproject.org//topics/variant-analysis/tutorials/pangenome-with-deepvariant/tutorial.html Visualisation, Sequencing quality control, Read mapping, Genome comparison 2026-09-30 2026-09-30 1 True False False False falco, vg_paths, deepvariant, tp_awk_tool, upload1, samtools_sort, vg_giraffe Galaxy Europe, Galaxy Main (US), Galaxy Switzerland 0 50 51 1.666667 0
Variant Analysis Calculating CHEK2 variant effect scores from MAVE data with CountESS T00589 gxy.io/GTN:T00589 https://training.galaxyproject.org//topics/variant-analysis/tutorials/countess-mave-chek2/tutorial.html Visualisation 2026-07-30 2026-09-23 2 True False False False ggplot2_point, join1, ggplot2_histogram, countess, Cut1 Galaxy Europe, Galaxy Switzerland 0 112 124 6.566667 0
Visualisation Visualisations in Galaxy S00101 gxy.io/GTN:S00101 https://training.galaxyproject.org//topics/visualisation/tutorials/introduction/slides.html 2020-01-10 2023-01-12 1 False True False False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 4427230 10050239 2.000000 0
Visualisation Ploting a Microbial Genome with Circos T00373 gxy.io/GTN:T00373 https://training.galaxyproject.org//topics/visualisation/tutorials/circos-microbial/tutorial.html Sequence visualisation 2023-11-08 2026-09-23 4 True False False True circos_interval_to_tile, circos_gc_skew, deeptools_bam_coverage, circos, Cut1, gff2bed1, circos_interval_to_text, circos_wiggle_to_scatter Galaxy France, Galaxy Canada, Galaxy Belgium Galaxy Europe, Galaxy Main (US), Galaxy Australia, Galaxy Switzerland, Galaxy Norway 0 2069 2554 8.066667 0
Visualisation Visualisation with Circos T00321 gxy.io/GTN:T00321 https://training.galaxyproject.org//topics/visualisation/tutorials/circos/tutorial.html Sequence visualisation 2020-01-10 2026-09-23 23 True True True True random_lines1, Remove beginning1, upload1, circos, Grep1, Cut1 Galaxy Europe, Galaxy Main (US), Galaxy France, Galaxy Switzerland, Galaxy Canada, Galaxy Belgium Galaxy Norway 0 4459506 10100915 4.666667 0
Visualisation Friends Don't Let Friends Make Bad Graphs S00112 gxy.io/GTN:S00112 https://training.galaxyproject.org//topics/visualisation/tutorials/bad-graphs/slides.html 2023-11-20 2023-11-20 2 False True True False UseGalaxy.eu, UseGalaxy.org, UseGalaxy.org.au, UseGalaxy.fr, UseGalaxy.ca 0 2771752 5331937 1.683333 0