debug-cwl-workflow-output

Triage failing CWL run outputs; classify failure modes; propose fixes.

Mold health

warn

Source layout
Every file beside index.md is one the mold kind declares.
Axis fields
target-specific fields are coherent.
Eval plan
Abstract oracle: the properties any cast of this Mold must satisfy.

eval.md not written yet.
Scenarios
Concrete cases bound to fixtures, run against the eval properties.

scenarios.md not written yet.
Typed refs
No typed references yet.
On-demand triggers
All on-demand references describe triggers.
Evidence checks
Hypothesis references include verification.

Claude skill debug-cwl-workflow-output — Triage failing CWL run outputs; classify failure modes; propose fixes.

/ pipeline contract

cwl-workflow-debug-report markdown cwl-workflow-debug-report.md

CWL failure-surface classification with captured run/job/output evidence and a recommended next step or reference-gap follow-up.

workflow-test-result

Structured run handoff from [[run-workflow-test]]: test result, run/job/artifact context, and the observed CWL failure modality.
produced by
- run-workflow-test

Triage a failing CWL run: classify the failure mode from logs and outputs and propose a fix routed to the authoring step responsible for it.

NEXTFLOW → CWL phase of pipeline — Direct path from a Nextflow pipeline to a CWL Workflow + CommandLineTool set.
PAPER → CWL phase of pipeline — Direct path from a paper to a CWL Workflow + CommandLineTool set.