Foundry

artifact

galaxy-workflow-draft

default filename(s): galaxy-workflow-draft.gxwf.yml

Producers (7)

  • advance-galaxy-draft-step yaml · galaxy-workflow-draft.gxwf.yml

    Same draft with one additional step concretized (one loop iteration). Once every step is concrete, [[draft-next-step]] reports `draft: false` and the harness exits the loop.

  • apply-galaxy-workflow-changeset yaml · galaxy-workflow-draft.gxwf.yml

    gxformat2 draft (see [[galaxy-workflow-draft-format]]) of the whole workflow: untouched steps carried at Resolved tier verbatim; tool-introducing/replacing edits injected as drafty steps with _plan_* fields for the per-step loop; direct edits applied inline.

  • cwl-summary-to-galaxy-template yaml · galaxy-workflow-draft.gxwf.yml

    gxformat2 draft (see [[galaxy-workflow-draft-format]]): topology fully resolved (workflow inputs, outputs, step set, edges); tool_id / tool_state / tool_shed_repository and wrapper-determined port names may be TODO with free-text _plan_state / _plan_context / _plan_in / _plan_out per step for later implementation Molds.

  • freeform-summary-to-galaxy-template yaml · galaxy-workflow-draft.gxwf.yml

    gxformat2 draft (see [[galaxy-workflow-draft-format]]): topology fully resolved (workflow inputs, outputs, step set, edges); tool_id / tool_state / tool_shed_repository and wrapper-determined port names may be TODO with free-text _plan_state / _plan_context / _plan_in / _plan_out per step for later implementation Molds.

  • implement-galaxy-tool-step yaml · galaxy-workflow-draft.gxwf.yml

    gxformat2 skeleton with one more abstract step replaced by a concrete tool step (loop iteration output).

  • nextflow-summary-to-galaxy-template yaml · galaxy-workflow-draft.gxwf.yml

    gxformat2 draft (see [[galaxy-workflow-draft-format]]): topology fully resolved (workflow inputs, outputs, step set, edges); tool_id / tool_state / tool_shed_repository and wrapper-determined port names may be TODO with free-text _plan_state / _plan_context / _plan_in / _plan_out per step for later implementation Molds.

  • repair-galaxy-draft-topology yaml · galaxy-workflow-draft.gxwf.yml

    Re-wired gxformat2 draft: a producer step (or small sub-path) inserted so the previously-blocked step's declared output is computable; new steps land at draft (TODO) tier.

Consumers (3)

  • advance-galaxy-draft-step

    gxformat2 draft (see [[galaxy-workflow-draft-format]]) mutated in-place across iterations; topology is fully concrete, individual tool steps may still carry `TODO_*` sentinels and `_plan_*` planning fields.

  • implement-galaxy-tool-step

    gxformat2 skeleton being filled in step by step; the step replaces a placeholder in this draft.

  • repair-galaxy-draft-topology

    Partially-realized gxformat2 draft (see [[galaxy-workflow-draft-format]]) whose topology can't support a declared step — the region to repair.

Schemas

Pipelines