001package org.galaxyproject.gxformat2.v19_09; 002 003import org.galaxyproject.gxformat2.v19_09.utils.Savable; 004 005/** 006 * Auto-generated interface for <I>https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow</I><br> 007 * This interface is implemented by {@link GalaxyWorkflowImpl}<br> 008 * 009 * <BLOCKQUOTE> 010 * 011 * A Galaxy workflow description. This record corresponds to the description of a workflow that 012 * should be executable on a Galaxy server that includes the contained tool definitions. 013 * 014 * <p>The workflows API or the user interface of Galaxy instances that are of version 19.09 or newer 015 * should be able to import a document defining this record. 016 * 017 * <p>## A note about `label` field. 018 * 019 * <p>This is the name of the workflow in the Galaxy user interface. This is the mechanism that 020 * users will primarily identify the workflow using. Legacy support - this may also be called 'name' 021 * and Galaxy will consume the workflow document fine and treat this attribute correctly - however 022 * in order to validate against this workflow definition schema the attribute should be called 023 * `label`. 024 * 025 * </BLOCKQUOTE> 026 */ 027public interface GalaxyWorkflow extends Process, HasUUID, Savable { 028 /** 029 * Getter for property <I>https://w3id.org/cwl/cwl#Identified/id</I><br> 030 * 031 * <BLOCKQUOTE> 032 * 033 * The unique identifier for this object. * 034 * 035 * </BLOCKQUOTE> 036 */ 037 java.util.Optional<String> getId(); 038 /** 039 * Getter for property <I>https://w3id.org/cwl/cwl#Labeled/label</I><br> 040 * 041 * <BLOCKQUOTE> 042 * 043 * A short, human-readable label of this object. * 044 * 045 * </BLOCKQUOTE> 046 */ 047 java.util.Optional<String> getLabel(); 048 /** 049 * Getter for property <I>https://w3id.org/cwl/salad#Documented/doc</I><br> 050 * 051 * <BLOCKQUOTE> 052 * 053 * A documentation string for this object, or an array of strings which should be concatenated. * 054 * 055 * </BLOCKQUOTE> 056 */ 057 Object getDoc(); 058 /** 059 * Getter for property <I>https://w3id.org/cwl/cwl#inputs</I><br> 060 * 061 * <BLOCKQUOTE> 062 * 063 * Defines the input parameters of the process. The process is ready to run when all required 064 * input parameters are associated with concrete values. Input parameters include a schema for 065 * each parameter which is used to validate the input object. It may also be used to build a user 066 * interface for constructing the input object. 067 * 068 * <p>When accepting an input object, all input parameters must have a value. If an input 069 * parameter is missing from the input object, it must be assigned a value of `null` (or the value 070 * of `default` for that parameter, if provided) for the purposes of validation and evaluation of 071 * expressions. * 072 * 073 * </BLOCKQUOTE> 074 */ 075 java.util.List<Object> getInputs(); 076 /** 077 * Getter for property <I>https://w3id.org/cwl/cwl#outputs</I><br> 078 * 079 * <BLOCKQUOTE> 080 * 081 * Defines the parameters representing the output of the process. May be used to generate and/or 082 * validate the output object. * 083 * 084 * </BLOCKQUOTE> 085 */ 086 java.util.List<Object> getOutputs(); 087 /** 088 * Getter for property <I>https://galaxyproject.org/gxformat2/gxformat2common#HasUUID/uuid</I><br> 089 * 090 * <BLOCKQUOTE> 091 * 092 * UUID uniquely representing this element. * 093 * 094 * </BLOCKQUOTE> 095 */ 096 java.util.Optional<String> getUuid(); 097 /** 098 * Getter for property <I>https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow/class</I><br> 099 */ 100 String getClass_(); 101 /** 102 * Getter for property <I>https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow/steps</I><br> 103 * 104 * <BLOCKQUOTE> 105 * 106 * The individual steps that make up the workflow. Each step is executed when all of its input 107 * data links are fulfilled. * 108 * 109 * </BLOCKQUOTE> 110 */ 111 java.util.List<Object> getSteps(); 112 /** 113 * Getter for property <I>https://galaxyproject.org/gxformat2/v19_09#GalaxyWorkflow/report</I><br> 114 * 115 * <BLOCKQUOTE> 116 * 117 * Workflow invocation report template. * 118 * 119 * </BLOCKQUOTE> 120 */ 121 java.util.Optional<Report> getReport(); 122}