Variant Analysis

Exome sequencing means that all protein-coding genes in a genome are sequenced

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Introduction to Variant analysis slides
Exome sequencing data analysis tutorial zenodo_link
Mapping and molecular identification of phenotype-causing mutations tutorial zenodo_link workflow
Microbial Variant Calling
prokaryote
tutorial zenodo_link workflow
Calling variants in non-diploid systems
prokaryote
tutorial zenodo_link
Calling variants in diploid systems tutorial
Calling very rare variants tutorial

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Maintainers

This material is maintained by:

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

References