Transcriptomics

Training material for all kinds of transcriptomics analysis.

Requirements

Before diving into this topic, we recommend you to have a look at:

Material

Lesson Slides Hands-on Input dataset Workflows Galaxy tour Galaxy instances
Introduction to Transcriptomics slides
De novo transcriptome reconstruction with RNA-Seq tutorial zenodo_link workflow interactive_tour
Reference-based RNA-Seq data analysis tutorial zenodo_link workflow interactive_tour
Differential abundance testing of small RNAs tutorial zenodo_link workflow
Visualization of RNA-Seq results with CummeRbund slides tutorial zenodo_link workflow
Reference-based RNAseq data analysis (long) tutorial

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Maintainers

This material is maintained by:

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

References