Introduction to Galaxy Analyses

Galaxy is a scientific workflow, data integration, and data and analysis persistence and publishing platform that aims to make computational biology accessible to research scientists that do not have computer programming experience.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

Your First Analysis

These are the core, foundational topics for learning how to use Galaxy.

Lesson Slides Hands-on Recordings Input dataset Workflows
A short introduction to Galaxy
español
    Video Languages
    Video Languages
From peaks to genes
Galaxy 101
Galaxy 101 for everyone
Introduction to Galaxy
Introduction to Genomics and Galaxy

Go a bit further

Explore the Galaxy a bit further after you've finished the basics.

Lesson Slides Hands-on Recordings Input dataset Workflows
Data Manipulation Olympics
cyoa
How to reproduce published Galaxy analyses
NGS data logistics
Options for using Galaxy

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

You can also use the following Docker image for these tutorials:

docker run -p 8080:80 quay.io/galaxy/introduction-training

NOTE: Use the -d flag at the end of the command if you want to automatically download all the data-libraries into the container.

It will launch a flavored Galaxy instance available on http://localhost:8080. This instance will contain all the tools and workflows to follow the tutorials in this topic. Login as admin with password password to access everything.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoJennifer Hillman-Jackson avatar Jennifer Hillman-Jacksonorcid logoDave Clements avatar Dave Clements

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoSaskia Hiltemann avatar Saskia Hiltemannorcid logoNicola Soranzo avatar Nicola SoranzoAlaa Elghamry avatar Alaa ElghamryOlha Nahorna avatar Olha Nahornaorcid logoMelanie Föll avatar Melanie Föllorcid logoClemens Blank avatar Clemens BlankJoachim Wolff avatar Joachim Wolfforcid logoAnne Fouilloux avatar Anne Fouillouxorcid logoNadia Goué avatar Nadia Gouéorcid logoAnna Syme avatar Anna Symeorcid logoDaniel Blankenberg avatar Daniel BlankenbergChristopher Barnett avatar Christopher BarnettMarius van den Beek avatar Marius van den Beekorcid logoCristóbal Gallardo avatar Cristóbal GallardoMichele Maroni avatar Michele MaroniDilmurat Yusuf avatar Dilmurat Yusuforcid logoBjörn Grüning avatar Björn GrüningAnton Nekrutenko avatar Anton Nekrutenkoorcid logoDave Clements avatar Dave ClementsAndrea Bagnacani avatar Andrea Bagnacaniorcid logoBérénice Batut avatar Bérénice Batutorcid logoAnthony Bretaudeau avatar Anthony BretaudeauAnne Pajon avatar Anne PajonSarah Peter avatar Sarah Peterorcid logoHelena Rasche avatar Helena Rasche

Funders

This material was funded by:

Gallantries: Bridging Training Communities in Life Science, Environment and Health avatar Gallantries