GMOD
Tutorials from the world of the Generic Model Organism Database (GMOD)
GMOD is a collection of open source software tools for managing, visualising, storing, and disseminating genetic and genomic data, many of which are directly interoperable.
You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides (slides) and tutorial (tutorial) buttons below.Material
JBrowse 1
Learn to use JBrowse v1 here.
MAKER
Genome Annotation with MAKER.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: Genome annotation with Maker (short) | |||||
Hands-on: Hands-on: Genome annotation with Maker |
InterMine
InterMine is a data warehouse you can query for interesting features and data.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: InterMine integration with Galaxy |
Apollo v2
Apollo is a collaborative, real time genome annotation editor.
Lesson | Slides | Hands-on | Recordings | Input dataset | Workflows |
---|---|---|---|---|---|
Hands-on: Hands-on: Refining Genome Annotations with Apollo (prokaryotes) | |||||
Hands-on: Hands-on: Refining Genome Annotations with Apollo (eukaryotes) |
Galaxy instances
You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.
Editorial Board
This material is reviewed by our Editorial Board:
Helena Rasche Anthony BretaudeauFor any question related to this topic and the content, you can contact them or visit our Gitter channel.
Contributors
This material was contributed to by:
Anthony Bretaudeau Alexandre Cormier Saskia Hiltemann Robert Meller Mateo Boudet Stéphanie Robin Frederick Tan Helena Rasche Avans Hogeschool Daniela Butano Anna Syme Nathan Dunn Torsten Seemann Erwan Corre Ava Hoffman Anton Nekrutenko Katherine Cox Miaomiao Zhou Yo Yehudi Delphine Lariviere Laura Leroi Candace Savonen Elizabeth Humphries Bazante Sanders Simon Gladman Bérénice Batut Natalie KucherFunders
This material was funded by:
NHGRI ANVIL NHGRI GDS Community Network ABRomics Gallantries EuroScienceGateway