FAIR Data, Workflows, and Research

These lessons will teach you how to make your research objects more FAIR with practical, hands-on advice.

You can view the tutorial materials in different languages by clicking the dropdown icon next to the slides () and tutorial () buttons below.

Material

FAIR Data Management

The FAIR (Findable, Accessible, Interoperable, Reusable) data stewardship created the foundation for sharing and publishing digital assets. These lessons will apply to machine accessibility and emphasize that all digital assets should share data in a way that will enable maximum use and reuse.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR in a nutshell
fair open data stewardship
Making clinical datasets FAIR
fair open data stewardship
Sequence data submission to ENA
FAIR ENA
FAIR data management solutions
fair dmp data stewardship
FAIR Galaxy Training Material
fair gtn training
FAIR Bioimage Metadata
fair data management bioimaging
REMBI - Recommended Metadata for Biological Images – metadata guidelines for bioimaging data
fair data management bioimaging
FAIRification of an RNAseq dataset
fair dmp data stewardship

Make workflows FAIR with RO-Crate

This section brought to you by the BY-COVID project, and will teach you how to make your research objects more FAIR with practical, hands-on advice.

Lesson Slides Hands-on Recordings Input dataset Workflows
RO-Crate - Introduction
Workflow Run RO-Crate Introduction
ro-crate
Exporting Workflow Run RO-Crates from Galaxy
ro-crate workflows
RO-Crate in Python
ro-crate jupyter-notebook
Best practices for workflows in GitHub repositories
ro-crate jupyter-notebook
Submitting workflows to LifeMonitor
ro-crate

FAIR Pointers

This series of lessons will tackle FAIR from the perspective of the 15 FAIR Principles published in 2016. You will learn about: FAIR and its origins The FAIR Principles and its basic characteristics.

Lesson Slides Hands-on Recordings Input dataset Workflows
FAIR and its Origins
fair dmp data stewardship
Metadata
fair dmp data stewardship
Data Registration
fair dmp data stewardship
Access
fair dmp data stewardship
Persistent Identifiers
fair dmp data stewardship

Other

Assorted Tutorials

Lesson Slides Hands-on Recordings Input dataset Workflows
Data management in Medicinal Chemistry
fair data-management medicinal-chemistry computational-chemistry

Galaxy instances

You can use a public Galaxy instance which has been tested for the availability of the used tools. They are listed along with the tutorials above.

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Editorial Board

This material is reviewed by our Editorial Board:

orcid logoSimone Leo avatar Simone Leoorcid logoLuca Pireddu avatar Luca Piredduorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyesorcid logoPaul De Geest avatar Paul De Geestorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowicz

For any question related to this topic and the content, you can contact them or visit our Gitter channel.

Contributors

This material was contributed to by:

orcid logoLuca Pireddu avatar Luca Piredduorcid logoSimone Leo avatar Simone Leoorcid logoRobert Andrews avatar Robert Andrewsorcid logoAndrew Mason avatar Andrew Masonorcid logoPhilippe Rocca-Serra avatar Philippe Rocca-Serraorcid logoKhaled Jum'ah avatar Khaled Jum'ahorcid logoKrzysztof Poterlowicz avatar Krzysztof Poterlowiczorcid logoSaskia Lawson-Tovey avatar Saskia Lawson-Toveyorcid logoHelena Rasche avatar Helena RascheKellie Snow avatar Kellie SnowSonal Henson avatar Sonal Hensonorcid logoPaul De Geest avatar Paul De Geestorcid logoMunazah Andrabi avatar Munazah Andrabiorcid logoXenia Perez Sitja avatar Xenia Perez Sitjaorcid logoNicola Soranzo avatar Nicola Soranzoorcid logoMarco Enrico Piras avatar Marco Enrico Pirasorcid logoEli Chadwick avatar Eli Chadwickorcid logoPeter Sefton avatar Peter SeftonTim Beck avatar Tim BeckJulia Jakiela avatar Julia JakielaSandra Ng avatar Sandra Ngorcid logoBruno P. Kinoshita avatar Bruno P. Kinoshitaorcid logoNick Juty avatar Nick Jutyorcid logoKatarzyna Kamieniecka avatar Katarzyna Kamienieckaorcid logoBranka Franicevic avatar Branka Franicevicorcid logoSara Morsy avatar Sara MorsyLaura Cooper avatar Laura CooperKorneel Hens avatar Korneel HensLaura Cooper avatar Laura Cooperorcid logoStian Soiland-Reyes avatar Stian Soiland-Reyes

Funders

This material was funded by:

EuroScienceGateway avatar EuroScienceGatewayBeYond-COVID avatar BeYond-COVIDDASH UK avatar DASH UK