Galaxy Server administration

Here you can learn everything you need to become a Pro Galaxy Administrator! These resources cover everything from setup, to configuration, to monitoring, to customisation.

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Material

Core

These are the core, foundational topics for the majority of administration in Galaxy.

Jobs & Scheduling

Learn how to use DRMAA and other resources to schedule your jobs on clusters

Data Management & Reference Data

Manage data like a pro: tips on scaling to 1PB and more.

Further Learning

These topics will let you further expand your knowledge. They all build upon what you learned in the core topics, and many expect that you have a setup identical to the one started in the core trainings.

Running Galaxy on the Cloud

If acronyms like EKS, EC2, GCP, ECS, K8S mean anything to you, then you've found where your home! Run Galaxy on someone else's computer with Cloud based tutorials

Maintaining a Production Galaxy

Deployed Galaxy? Now what? All of the knowledge you need to maintain it long term.

Monitoring

Monitor Galaxy like UseGalaxy.eu, learn the ins and outs of monitoring

Deprecated Tutorials

Please do not run these. They are outdated and for historical, archival purposes only.

Other

Assorted Tutorials

Frequently Asked Questions

Common questions regarding this topic have been collected on a dedicated FAQ page . Common questions related to specific tutorials can be accessed from the tutorials themselves.

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Community Resources

Editorial Board

This material is reviewed by our Editorial Board:

Helena Rasche

Nate Coraor

Björn Grüning

Martin Čech

Mira Kuntz

Are you on the editorial board or want to help out with this topic? View the topic maintainer page for ways to improve this topic!

Contributors

This material was contributed to by:

John Davis

Matthias Bernt

Lucille Delisle

Valentin Marcon

Marie Josse

Niall Beard

Saskia Hiltemann

Catherine Bromhead

Björn Grüning

Nate Coraor

Pablo Moreno

Abdulrahman Azab

Anne Fouilloux

Bérénice Batut

Cristóbal Gallardo

Nicola Soranzo

Mirela Minkova

Daniel Blankenberg

Helena Rasche

Gianmauro Cuccuru

José Manuel Domínguez

Bartosz Walkowicz

Vlad Visan

Gildas Le Corguillé

Tunc Kayikcioglu

Martin Čech

Hans-Rudolf Hotz

Alex Mahmoud

Laila Los

Armin Dadras

Peter van Heusden

Nuwan Goonasekera

Yvan Le Bras

Simon Gladman

Anthony Bretaudeau

Tomas Klingström

Mira Kuntz

Dawa Ometto

Torfinn Nome

Enis Afgan

Łukasz Opioła

Marius van den Beek

Mélanie Petera

Kweyakie Afi Blebo

John Chilton

Dave B.

Edwin den Haas

Funding

These individuals or organisations provided funding support for the development of this resource

Gallantries

This project (2020-1-NL01-KA203-064717) is funded with the support of the Erasmus+ programme of the European Union. Their funding has supported a large number of tutorials within the GTN across a wide array of topics.

ELIXIR Europe

CINECA

UFR

EuroScienceGateway

EuroScienceGateway was funded by the European Union programme Horizon Europe (HORIZON-INFRA-2021-EOSC-01-04) under grant agreement number 101057388 and by UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee grant number 10038963.

de.NBI

SURF

Fair-Ease

FAIR-EASE is a RIA project funded under HORIZON-INFRA-2021-EOSC-01-04, and it involves a consortium of 25 partners from all over Europe.